Characterisation of the genomes of four putative vesiculoviruses: Tench rhabdovirus, grass carp rhabdovirus, perch rhabdovirus and eel rhabdovirus European X

Archives of Virology

Volumn 158, Issue 11, 2013, Pages 2371-2377

  Stone, David M ^a   Kerr, Rose C ^a   Hughes, Margaret ^b   Radford, Alan D ^b   Darby, Alistair C ^b  

^a CENTRE FOR ENVIRONMENT   (United Kingdom)

^b UNIVERSITY OF LIVERPOOL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; CARP; CLASSIFICATION; CYPRINIFORMES; DNA SEQUENCE; EEL; FISH; FISH DISEASE; GENETICS; ISOLATION AND PURIFICATION; PERCH; PHYLOGENY; RHABDOVIRUS INFECTION; VESICULAR STOMATITIS VIRUS; VIROLOGY; VIRUS GENOME;

ANIMALS; CARPS; CYPRINIDAE; EELS; FISH DISEASES; FISHES; GENOME, VIRAL; PERCHES; PHYLOGENY; RHABDOVIRIDAE INFECTIONS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; VESICULOVIRUS;

CTENOPHARYNGODON; CYPRINIDAE; ESOCIDAE; MAMMALIA; RHABDOVIRIDAE; SALMONIDAE; SALVELINUS NAMAYCUSH; TINCA; TROUT RHABDOVIRUS 903/87;

EID: 84886724780     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1711-x     Document Type: Article

References (23)

1. Jorgensen PEV, Olesen NJ, Ahne W, Lorenzen N (1989) SVCV and PFRV viruses: serological examination off 22 isolates indicates a close relationship between two fish rhabdoviruses. In: Ahne W, Kurstak E (eds) Viruses of lower vertebrates. Springer, Berlin, pp 349-366.
2. Hoffmann B, Schutze H, Mettenleiter TC (2002) Determination of the complete genomic sequence and analysis of the gene products of the virus of Spring Viremia of Carp, a fish rhabdovirus. Virus Res 84: 89-100.
3. Stone DM, Ahne W, Sheppard AM, Tsin-yee Liu CT-Y, Taylor GR, Denham KD, Dixon PF, Way K (2003) Nucleotide sequence analysis of the glycoprotein gene of putative spring viraemia of carp viruses and pike fry rhabdovirus isolates reveals four distinct piscine vesiculovirus genogroups. Dis Aquat Org 53: 203-210.
4. Rowley H, Graham DA, Campbell S, Way K, Stone DM, Curran WL, Bryson DG (2001) Isolation and characterisation of rhabdovirus from wild common bream (Abramis brama) and roach (Rutilis rutilis) and from farmed brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) in Northern Ireland. Dis Aquat Org 48: 7-15.
5. Sheppard AM, Le Deuff R-M, Martin PD, Woolford G, Way K, Stone DM (2007) Genotyping spring viraemia of carp virus and other piscine vesiculo-like viruses using reverse hybridization. Dis Aquat Org 76: 163-168.
6. Johansson T, Ostman-Myllyoja L, Hellstrom A, Martelius S, Olesen NJ, Bjorklund H (2002) A novel fish rhabdovirus from Sweden is closely related to the Finnish rhabdovirus 903/87. Virus Genes 25(2): 127-138.
7. Johansson T, Nylund S, Olesen NJ (2001) Molecular characterization of the nucleocapsid protein gene, glycoprotein gene and gene junctions of rhabdovirus 903/87, a novel fish pathogenic rhabdovirus. Virus Res 80: 11-22.
8. Sano T, Nishimura T, Okamoto N, Fukuda H (1976) Isolation of rhabdovirus from European eels (Anguilla anguilla) at Japanese port of entry. Fish Health News 5: 55a.
9. Betts AM, Stone DM, Way K, Torhy C, Chilmonczyk S, Benmansour A, de Kinkelin P (2003) Emerging rhabdovirus infections of fresh water fish. Dis Aquat Org 57: 201-212.
10. Ahne W, Mahnel H, Steinhagen P (1982) Isolation of pike fry rhabdovirus from tench, Tinca tinca L., and white bream, Bicca bjoerkna (L.). J Fish Dis 5: 535-537.
11. Ahne W (1975) A rhabdovirus isolated from grass carp (Ctenopharyngodon idella Val.). Arch Virol 58: 181-185.
12. Dorson M, Torchy C, Chilmonczyk S, de Kinkelin P, Michel C (1984) A rhabdovirus pathogenic for perch, Perca fluviatilis L.: isolation and preliminary study. J Fish Dis 7: 241-245.
13. Mahy BWJ, Kangro HO (1996) Virology methods manual. Academic Press, Ltd., London.
14. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B (2000) Artemis: sequence visualization and annotation. Bioinformatics 16(10): 944-945.
15. Delcher AL, Harmon D, Kasif S, White O, Salzberg SL (1999) Improved microbial gene identification with GLIMMER. Nuc Acid Res 27(23): 4636-4641.
16. Dietzgen RG, Calisher CH, Kurath G, Kuzmin IV, Rodriguez LL, Stone DM, Tesh RB, Tordo N, Walker PJ, Wetzel T, Whitfield AE (2012) Rhabdoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: classification and nomenclature of viruses: Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 685-712.
17. Chen H-L, Lui H, liu Z-X, He J-Q, Gao L-Y, Shi X-J, Jaing Y-L (2009) Characterisation of the complete genome sequence of pike fry rhabdovirus. Arch Virol 154: 1489-1494.
18. Galinier R, van Beurden S, Amilhat E, Castric J, Schoehn G, Verneau O, Fazio G, Allienne JF, Engelsma M, Sasal P, Faliex E (2012) Complete genomic sequence and taxonomic position of eel virus European X (EVEX), a rhabdovirus of European eel. Virus Res 166: 1-12.
19. Thompson J, Higgiin D, Gibson T (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nuc Acids Res 22: 4673-4680.
20. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
21. Fitch WM (1971) Towards defining the course of evolution: Minimum change for a specific tree topology. Syst Zool 20: 406-416.
22. Talbi C, Cabon J, Baud M, Bourjaily M, de Boisseson C, Castric J, Bigarre L (2011) Genetic diversity of perch rhabdoviruses isolates based on the nucleoprotein and glycoprotein genes arch. Virol 156(12): 2133-2144.
23. Tao JJ, Zhou GZ, Gui JF, Zhang QY (2008) Genomic sequence of mandarin fish rhabdovirus with an unusual small non-transcriptional ORF. Virus Res 132: 86-96.