Self-assembly of luminescent Ag nanocluster-functionalized nanowires

Langmuir

Volumn 29, Issue 42, 2013, Pages 13066-13071

  Orbach, Ron ^a   Guo, Weiwei ^a   Wang, Fuan ^a   Lioubashevski, Oleg ^a   Willner, Itamar ^a  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULES; LUMINESCENCE; NANOCLUSTERS; NANOWIRES; SCAFFOLDS; SELF ASSEMBLY; SILVER; SILVER METALLOGRAPHY;

AG NANOCLUSTERS; DNA LOOPS; FUNCTIONALIZED NANOWIRE; HYBRIDIZATION CHAIN REACTIONS; LUMINESCENT AG NANOCLUSTERS; POLYMER CHAINS; POLYMERIZATION PROCESS; SELF-ASSEMBLE;

NUCLEIC ACIDS;

DNA; METAL NANOPARTICLE; NANOWIRE; SILVER;

ARTICLE; CHEMISTRY; FLUOROMETRY; LUMINESCENCE; NUCLEIC ACID HYBRIDIZATION; PARTICLE SIZE; POLYMERIZATION; SURFACE PROPERTY; SYNTHESIS;

DNA; FLUOROMETRY; LUMINESCENCE; METAL NANOPARTICLES; NANOWIRES; NUCLEIC ACID HYBRIDIZATION; PARTICLE SIZE; POLYMERIZATION; SILVER; SURFACE PROPERTIES;

EID: 84886613219     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la402888b     Document Type: Article

References (53)

1. Davis, J. T.; Spada, G. P. Supramolecular Architectures Generated by Self-Assembly of Guanosine Derivatives Chem. Soc. Rev. 2007, 36, 296-313
2. Collie, G. W.; Parkinson, G. N. The Application of DNA and RNA G-quadruplexes to Therapeutic Medicines Chem. Soc. Rev. 2011, 40, 5867-5892
3. Leroy, J. L.; Gueron, M.; Mergny, J. L.; Helene, C. Intramolecular Folding of a Fragment of the Cytosine-Rich Strand of Telomeric DNA into an i-Motif Nucleic Acids Res. 1994, 22, 1600-1606
4. Collin, D.; Gehring, K. Stability of Chimeric DNA/RNA Cytosine Tetrads: Implications for i-Motif Formation by RNA J. Am. Chem. Soc. 1998, 120, 4069-4072
5. Osborne, S. E.; Matsumura, I.; Ellington, A. D. Aptamers as Therapeutic and Diagnostic Reagents: Problems and Prospects Curr. Opin. Chem. Biol. 1997, 1, 5-9
6. Famulok, M.; Hartig, J. S.; Mayer, G. Functional Aptamers and Aptazymes in Biotechnology, Diagnostics, and Therapy Chem. Rev. 2007, 107, 3715-3743
7. Xing, H.; Wong, N. Y.; Xiang, Y.; Lu, Y. DNA Aptamer Functionalized Nanomaterials for Intracellular Analysis, Cancer Cell Imaging and Drug Delivery Curr. Opin. Chem. Biol. 2012, 16, 429-435
8. Joyce, G. F. Directed Evolution of Nucleic Acid Enzymes Annu. Rev. Biochem. 2004, 73, 791-836
9. Silverman, S. K. Catalytic DNA (Deoxyribozymes) for Synthetic Applications, Current Abilities and Future Prospects Chem. Commun. 2008, 3467-3485
10. Willner, I.; Shlyahovsky, B.; Zayats, M.; Willner, B. DNAzymes for Sensing, Nanobiotechnology and Logic Gate Applications Chem. Soc. Rev. 2008, 37, 1153-1165
11. Stoddard, B. L. Q. Homing Endonuclease Structure and Function Rev. Biophys. 2005, 38, 49-95
12. Gupta, R.; Capalash, N.; Sharma, P. Restriction Endonucleases: Natural and Directed Evolution Appl. Microbiol. Biotechnol. 2012, 94, 583-599
13. Mitchell, P. J.; Tjian, R. Transcriptional Regulation in Mammalian Cells by Sequence-Specific DNA Binding Proteins Science 1989, 245, 371-378
14. Libermann, T. A.; Zerbini, L. F. Targeting Transcription Factors for Cancer Gene Therapy Curr. Gene Ther. 2006, 6, 17-33
15. Storhoff, J. J.; Elghanian, R.; Mucic, R. C.; Mirkin, C. A.; Letsinger, R. L. One-Pot Colorimetric Differentiation of Polynucleotides with Single Base Imperfections Using Gold Nanoparticle Probes J. Am. Chem. Soc. 1998, 120, 1959-1964
16. Drummond, T. G.; Hill, M. G.; Barton, J. K. Electrochemical DNA Sensors Nat. Biotechnol. 2003, 21, 1192-1199
17. 2+-Dependent DNAzyme and Hemin/G-Quadruplex as a Label Anal. Chem. 2012, 82, 7073-7077
18. 2+-Dependent DNAzymes: An Interplay Between DNA Sensing and Logic-Gate Operations Chem.-Eur. J. 2012, 18, 14689-14694
19. Bath, J.; Turberfield, A. J. DNA Nanomachines Nat. Biotechnol. 2007, 2, 275-284
20. Teller, C.; Willner, I. Functional Nucleic Acid Nanostructures and DNA Machines Curr. Opin. Biotechnol. 2010, 21, 376-391
21. Chelyapov, N.; Brun, Y.; Gopalkrishnan, M.; Reishus, D.; Shaw, B.; Adleman, L. DNA Triangles and Self-Assembled Hexagonal Tilings J. Am. Chem. Soc. 2004, 126, 13924-13925
22. Lin, C.; Liu, Y.; Rinker, S.; Yan, H. DNA Tile Based Self-Assembly: Building Complex Nanoarchitectures ChemPhysChem 2006, 7, 1641-1647
23. McLaughlin, C. K.; Hamblin, G. D.; Sleiman, H. F. Supramolecular DNA Assembly Chem. Soc. Rev. 2011, 40, 5647-5656
24. Wilner, O. I.; Willner, I. Functionalized DNA Nanostructures Chem. Rev. 2012, 112, 2528-2556
25. Stojanovic, M. N.; Stefanovic, D. A Deoxyribozyme-Based Molecular Automaton Nat. Biotechnol. 2003, 21, 1067-1074
26. Elbaz, J.; Lioubashevski, O.; Wang, F.; Remacle, F.; Levine, R. D.; Willner, I. DNA Computing Circuits Using Libraries of DNAzyme Subunits Nat. Nanotechnol. 2010, 5, 417-422
27. Qian, L.; Winfree, E. Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades Science 2011, 332, 1196-1201
28. Orbach, R.; Remacle, F.; Levine, R. D.; Willner, I. Logic Reversibility and Thermodynamic Irreversibility Demonstrated By DNAzyme-Based Toffoli and Fredkin Logic Gates Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 21228-21233
29. Nilsson, M.; Dahl, F.; Larsson, C.; Gullberg, M.; Stenberg, J. Analyzing Genes Using Closing and Replicating Circles Trends Biotechnol. 2006, 24, 83-88
30. Zhang, D.; Wu, J.; Ye, F.; Feng, T.; Lee, I.; Yin, B. Amplification of Circularizable Probes for the Detection of Target Nucleic Acids and Proteins Clin. Chim. Acta 2006, 363, 61-70
31. Dirks, R. M.; Pierce, N. A. Triggered Amplification by Hybridization Chain Reaction Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 15275-15278
32. Li, B.; Jiang, Y.; Chen, X.; Ellington, A. D. Probing Spatial Organization of DNA Strands Using Enzyme-Free Hairpin Assembly Circuits J. Am. Chem. Soc. 2012, 134, 13918-13921
33. Deng, Z.; Tian, Y.; Lee, S. H.; Ribbe, A. E.; Mao, C. DNA-Encoded Self-Assembly of Gold Nanoparticles into One-Dimensional Arrays Angew. Chem., Int. Ed. 2005, 44, 3582-3585
34. Cheglakov, Z.; Weizmann, Y.; Braunschweig, A. B.; Wilner, O. I.; Willner, I. Increasing the Complexity of Periodic Protein Nanostructures by the Rolling-Circle-Amplified Synthesis of Aptamers Angew. Chem., Int. Ed. 2007, 47, 126-130
35. Zheng, J.; Nicovich, P. R.; Dickson, R. M. Highly Fluorescent Noble-Metal Quantum Dots Annu. Rev. Phys. Chem. 2007, 58, 409-431
36. Choi, S.; Dickson, R. M.; Yu, J. Developing Luminescent Silver Nanodots for Biological Applications Chem. Soc. Rev. 2012, 41, 1867-1891
37. O'Neill, P. R.; Young, K.; Schiffels, D.; Fygenson, D. K. Few-Atom Fluorescent Silver Clusters Assemble at Programmed Sites on DNA Nanotubes Nano Lett. 2012, 12, 5464-5469
38. Petty, J. T.; Zheng, J.; Hud, N. V.; Dickson, R. M. DNA-Templated Ag Nanocluster Formation J. Am. Chem. Soc. 2004, 126, 5207-5212
39. Vosch, T.; Antoku, Y.; Hsiang, J. C.; Richards, C. I.; Gonzalez, J. I.; Dickson, R. M. Strongly Emissive Individual DNA-Encapsulated Ag Nanoclusters as Single-Molecule Fluorophores Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 12616-12621
40. Gwinn, E. G.; O'Neill, P.; Guerrero, A. J.; Bouwmeester, D.; Fygenson, D. K. Sequence-Dependent Fluorescence of DNA-Hosted Silver Nanoclusters Adv. Mater. 2008, 20, 279-283
41. Richards, C. I.; Choi, S.; Hsiang, J. C.; Antoku, Y.; Vosch, T.; Bongiorno, A.; Tzeng, Y. L.; Dickson, R. M. Oligonucleotide-Stabilized Ag Nanocluster Fluorophores J. Am. Chem. Soc. 2008, 130, 5038-5039
42. Guo, W.; Yuan, J.; Dong, Q.; Wang, E. Highly Sequence-Dependent Formation of Fluorescent Silver Nanoclusters in Hybridized DNA Duplexes for Single Nucleotide Mutation Identification J. Am. Chem. Soc. 2010, 132, 932-934
43. 2+ Ion Chem. Commun. 2009, 3395-3397
44. Su, Y. T.; Lan, G. Y.; Chen, W. Y.; Chang, H. T. Detection of Copper Ions Through Recovery of the Fluorescence of DNA-Templated Copper/Silver Nanoclusters in the Presence of Mercaptopropionic acid Anal. Chem. 2010, 82, 8566-8572
45. Han, B.; Wang, E. Oligonucleotide-Stabilized Fluorescent Silver Nanoclusters for Sensitive Detection of Biothiols in Biological Fluids Biosens Bioelectron 2011, 26, 2585-2589
46. Yeh, H. C.; Sharma, J.; Han, J. J.; Martinez, J. S.; Werner, J. H. A DNA-Silver Nanocluster Probe that Fluoresces Upon Hybridization Nano Lett. 2010, 10, 3106-3110
47. Liu, X.; Wang, F.; Aizen, R.; Yehezkeli, O.; Willner, I. Graphene Oxide/Nucleic Acid-Stabilized Silver Nanoclusters: Functional Hybrid Materials for Optical Aptamer Sensing and Multiplexed Analysis of Pathogenic DNAs J. Am. Chem. Soc. 2013, 135, 11832-11839
48. Sharma, J.; Yeh, H. C.; Yoo, H.; Werner, J. H.; Martinez, J. S. Silver Nanocluster Aptamers: In Situ Generation of Intrinsically Fluorescent Recognition Ligands for Protein Detection Chem. Commun. 2011, 47, 2294-2296
49. Zhang, L.; Zhu, J.; Guo, S.; Li, T.; Li, J.; Wang, E. Photoinduced Electron Transfer of DNA/Ag Nanoclusters Modulated by G-quadruplex/Hemin Complex for the Construction of Versatile Biosensors J. Am. Chem. Soc. 2013, 135, 2403-2406
50. Liu, X.; Wang, F.; Niazov-Elkan, A.; Guo, W.; Willner, I. Probing Biocatalytic Transformations with Luminescent DNA/Silver Nanoclusters Nano Lett. 2013, 13, 309-314
51. Yu, J.; Choi, S.; Richards, C. I.; Antoku, Y.; Dickson, R. M. Live Cell Surface Labeling with Fluorescent Ag Nanocluster Conjugates Photochem. Photobiol. 2008, 84, 1435-1439
52. 2+ and its Immobilization in Hydrogels Biosens. Bioelectron. 2013, 48, 82-86
53. Guo, W.; Orbach, R.; Mironi-Harpaz, I.; Seliktar, I.; Willner, I. Fluorescent DNA Hydrogels Composed of Nucleic Acid-Stabilized Silver Nanoclusters Small 2013, 10.1002/smll.201300055