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Volumn 8, Issue 1, 2014, Pages 187-194

Developing a novel panel of genome-wide ancestry informative markers for bio-geographical ancestry estimates

Author keywords

Ancestry inference; Ancestry informative markers; Multiplex assay; Population genetics; SNPs

Indexed keywords

AFRICA; ANCESTRY INFORMATIVE MARKER; ARTICLE; ASIA; BIOLOGICAL TRAIT; DNA FLANKING REGION; DNA MARKER; EUROPE; GENE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; HAPLOTYPE MAP; HUMAN; MEDICAL GEOGRAPHY; POPULATION GENETICS; POPULATION STRUCTURE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84886496207     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2013.09.004     Document Type: Article
Times cited : (29)

References (46)
  • 3
    • 67349224664 scopus 로고    scopus 로고
    • DNA-based prediction of human externally visible characteristics in forensics: Motivations, scientific challenges, and ethical considerations
    • M. Kayser, and P.M. Schneider DNA-based prediction of human externally visible characteristics in forensics: motivations, scientific challenges, and ethical considerations Forensic Sci. Int. Genet. 3 2009 154 161
    • (2009) Forensic Sci. Int. Genet. , vol.3 , pp. 154-161
    • Kayser, M.1    Schneider, P.M.2
  • 4
    • 79951787403 scopus 로고    scopus 로고
    • Improving human forensics through advances in genetics, genomics and molecular biology
    • M. Kayser, and P. de Knijff Improving human forensics through advances in genetics, genomics and molecular biology Nat. Rev. Genet. 12 2011 179 192
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 179-192
    • Kayser, M.1    De Knijff, P.2
  • 7
    • 42949172329 scopus 로고    scopus 로고
    • A panel of ancestry informative markers for estimating individual biogeographical ancestry and admixture from four continents: Utility and applications
    • DOI 10.1002/humu.20695
    • I. Halder, M. Shriver, M. Thomas, J.R. Fernandez, and T. Frudakis A panel of ancestry informative markers for estimating individual biogeographical ancestry and admixture from four continents: utility and applications Hum. Mutat. 29 2008 648 658 (Pubitemid 351614589)
    • (2008) Human Mutation , vol.29 , Issue.5 , pp. 648-658
    • Halder, I.1    Shriver, M.2    Thomas, M.3    Fernandez, J.R.4    Frudakis, T.5
  • 10
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • J.K. Pritchard, M. Stephens, and P. Donnelly Inference of population structure using multilocus genotype data Genetics 155 2000 945 959 (Pubitemid 30397141)
    • (2000) Genetics , vol.155 , Issue.2 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 11
    • 0035121797 scopus 로고    scopus 로고
    • Accounting for unmeasured population substructure in case-control studies of genetic association using a novel latent-class model
    • DOI 10.1086/318195
    • G.A. Satten, W.D. Flanders, and Q. Yang Accounting for unmeasured population substructure in case-control studies of genetic association using a novel latent-class model Am. J. Hum. Genet. 68 2001 466 477 (Pubitemid 32147815)
    • (2001) American Journal of Human Genetics , vol.68 , Issue.2 , pp. 466-477
    • Satten, G.A.1    Flanders, W.D.2    Yang, Q.3
  • 13
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • DOI 10.1038/ng1847, PII NG1847
    • A.L. Price, N.J. Patterson, R.M. Plenge, M.E. Weinblatt, N.A. Shadick, and D. Reich Principal components analysis corrects for stratification in genome-wide association studies Nat. Genet. 38 2006 904 909 (Pubitemid 44141658)
    • (2006) Nature Genetics , vol.38 , Issue.8 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 17
    • 30844438710 scopus 로고    scopus 로고
    • Examination of ancestry and ethnic affiliation using highly informative diallelic DNA markers: Application to diverse and admixed populations and implications for clinical epidemiology and forensic medicine
    • DOI 10.1007/s00439-005-0012-1
    • N. Yang, H. Li, L.A. Criswell, P.K. Gregersen, M.E. Alarcon-Riquelme, R. Kittles, R. Shigeta, G. Silva, P.I. Patel, and J.W. Belmont Examination of ancestry and ethnic affiliation using highly informative diallelic DNA markers: application to diverse and admixed populations and implications for clinical epidemiology and forensic medicine Hum. Genet. 118 2005 382 392 (Pubitemid 43101691)
    • (2005) Human Genetics , vol.118 , Issue.3-4 , pp. 382-392
    • Yang, N.1    Li, H.2    Criswell, L.A.3    Gregersen, P.K.4    Alarcon-Riquelme, M.E.5    Kittles, R.6    Shigeta, R.7    Silva, G.8    Patel, P.I.9    Belmont, J.W.10    Seldin, M.F.11
  • 20
    • 35349012592 scopus 로고    scopus 로고
    • Genome-wide detection and characterization of positive selection in human populations
    • DOI 10.1038/nature06250, PII NATURE06250
    • P.C. Sabeti, P. Varilly, B. Fry, J. Lohmueller, E. Hostetter, C. Cotsapas, X. Xie, E.H. Byrne, S.A. McCarroll, and R. Gaudet Genome-wide detection and characterization of positive selection in human populations Nature 449 2007 913 918 (Pubitemid 47598625)
    • (2007) Nature , vol.449 , Issue.7164 , pp. 913-918
    • Sabeti, P.C.1    Varilly, P.2    Fry, B.3    Lohmueller, J.4    Hostetter, E.5
  • 21
    • 34247097012 scopus 로고    scopus 로고
    • Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms
    • DOI 10.1111/j.1469-1809.2006.00341.x
    • O. Lao, J.M. de Gruijter, K. van Duijn, A. Navarro, and M. Kayser Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms Ann. Hum. Genet. 71 2007 354 369 (Pubitemid 46585678)
    • (2007) Annals of Human Genetics , vol.71 , Issue.3 , pp. 354-369
    • Lao, O.1    De Gruijter, J.M.2    Van Duijn, K.3    Navarro, A.4    Kayser, M.5
  • 22
    • 79953836820 scopus 로고    scopus 로고
    • IrisPlex: A sensitive DNA tool for accurate prediction of blue and brown eye colour in the absence of ancestry information
    • S. Walsh, F. Liu, K.N. Ballantyne, M. van Oven, O. Lao, and M. Kayser IrisPlex: a sensitive DNA tool for accurate prediction of blue and brown eye colour in the absence of ancestry information Forensic Sci. Int. Genet. 5 2011 170 180
    • (2011) Forensic Sci. Int. Genet. , vol.5 , pp. 170-180
    • Walsh, S.1    Liu, F.2    Ballantyne, K.N.3    Van Oven, M.4    Lao, O.5    Kayser, M.6
  • 27
    • 0031869761 scopus 로고    scopus 로고
    • Climatic influences on human body size and proportions: Ecological adaptations and secular trends
    • DOI 10.1002/(SICI)1096-8644(199808)106:4<483::AID-AJPA4>3.0.CO;2-K
    • P.T. Katzmarzyk, and W.R. Leonard Climatic influences on human body size and proportions: ecological adaptations and secular trends Am. J. Phys. Anthropol. 106 1998 483 503 (Pubitemid 28367199)
    • (1998) American Journal of Physical Anthropology , vol.106 , Issue.4 , pp. 483-503
    • Katzmarzyk, P.T.1    Leonard, W.R.2
  • 28
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • The International HapMap Project Nature 426 2003 789 796
    • (2003) Nature , vol.426 , pp. 789-796
  • 29
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • DOI 10.1038/nature06258, PII NATURE06258
    • K.A. Frazer, D.G. Ballinger, D.R. Cox, D.A. Hinds, L.L. Stuve, R.A. Gibbs, J.W. Belmont, A. Boudreau, P. Hardenbol, and S.M. Leal A second generation human haplotype map of over 3.1 million SNPs Nature 449 2007 851 861 (Pubitemid 47598626)
    • (2007) Nature , vol.449 , Issue.7164 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3    Hinds, D.A.4    Stuve, L.L.5    Gibbs, R.A.6
  • 30
    • 77957753324 scopus 로고    scopus 로고
    • Inference of unexpected genetic relatedness among individuals in HapMap Phase III
    • T.J. Pemberton, C. Wang, J.Z. Li, and N.A. Rosenberg Inference of unexpected genetic relatedness among individuals in HapMap Phase III Am. J. Hum. Genet. 87 2010 457 464
    • (2010) Am. J. Hum. Genet. , vol.87 , pp. 457-464
    • Pemberton, T.J.1    Wang, C.2    Li, J.Z.3    Rosenberg, N.A.4
  • 32
    • 63449104290 scopus 로고    scopus 로고
    • Genetic admixture, self-reported ethnicity, self-estimated admixture, and skin pigmentation among Hispanics and Native Americans
    • Y.C. Klimentidis, G.F. Miller, and M.D. Shriver Genetic admixture, self-reported ethnicity, self-estimated admixture, and skin pigmentation among Hispanics and Native Americans Am. J. Phys. Anthropol. 138 2009 375 383
    • (2009) Am. J. Phys. Anthropol. , vol.138 , pp. 375-383
    • Klimentidis, Y.C.1    Miller, G.F.2    Shriver, M.D.3
  • 33
    • 0015818251 scopus 로고
    • Analyses of gene frequencies
    • C.C. Cockerham Analyses of gene frequencies Genetics 74 1973 679 700
    • (1973) Genetics , vol.74 , pp. 679-700
    • Cockerham, C.C.1
  • 34
    • 0023503873 scopus 로고
    • Correlations, descent measures: Drift with migration and mutation
    • C.C. Cockerham, and B.S. Weir Correlations, descent measures: drift with migration and mutation Proc. Natl. Acad. Sci. U. S. A. 84 1987 8512 8514
    • (1987) Proc. Natl. Acad. Sci. U. S. A. , vol.84 , pp. 8512-8514
    • Cockerham, C.C.1    Weir, B.S.2
  • 36
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • DOI 10.1093/bioinformatics/bth457
    • J.C. Barrett, B. Fry, J. Maller, and M.J. Daly Haploview: analysis and visualization of LD and haplotype maps Bioinformatics 21 2005 263 265 (Pubitemid 40202029)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 37
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • D. Falush, M. Stephens, and J.K. Pritchard Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies Genetics 164 2003 1567 1587 (Pubitemid 37102217)
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 38
    • 0026551039 scopus 로고
    • Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups
    • A. Edwards, H.A. Hammond, L. Jin, C.T. Caskey, and R. Chakraborty Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups Genomics 12 1992 241 253
    • (1992) Genomics , vol.12 , pp. 241-253
    • Edwards, A.1    Hammond, H.A.2    Jin, L.3    Caskey, C.T.4    Chakraborty, R.5
  • 42
    • 51149090386 scopus 로고    scopus 로고
    • A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery
    • S. Xu, and L. Jin A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery Am. J. Hum. Genet. 83 2008 322 336
    • (2008) Am. J. Hum. Genet. , vol.83 , pp. 322-336
    • Xu, S.1    Jin, L.2
  • 43
    • 80052751767 scopus 로고    scopus 로고
    • Analyses of a set of 128 ancestry informative single-nucleotide polymorphisms in a global set of 119 population samples
    • J.R. Kidd, F.R. Friedlaender, W.C. Speed, A.J. Pakstis, F.M. De La Vega, and K.K. Kidd Analyses of a set of 128 ancestry informative single-nucleotide polymorphisms in a global set of 119 population samples Investig. Genet. 2 2011 1
    • (2011) Investig. Genet. , vol.2 , pp. 1
    • Kidd, J.R.1    Friedlaender, F.R.2    Speed, W.C.3    Pakstis, A.J.4    De La Vega, F.M.5    Kidd, K.K.6


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