-
1
-
-
29244448340
-
Microarray data analysis: From disarray to consolidation and consensus
-
Allison, D.B., Cui, X., Page, G.P., and Sabripour, M. (2006). Microarray data analysis: From disarray to consolidation and consensus. Nat. Rev. Genet. 7: 55-65.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 55-65
-
-
Allison, D.B.1
Cui, X.2
Page, G.P.3
Sabripour, M.4
-
2
-
-
0032144201
-
Stacks on tracks: The plant Golgi apparatus traffics on an actin/ER network
-
Boevink, P., Oparka, K., Santa Cruz, S., Martin, B., Betteridge, A., and Hawes, C. (1998). Stacks on tracks: The plant Golgi apparatus traffics on an actin/ER network. Plant J. 15: 441-447.
-
(1998)
Plant J.
, vol.15
, pp. 441-447
-
-
Boevink, P.1
Oparka, K.2
Santa Cruz, S.3
Martin, B.4
Betteridge, A.5
Hawes, C.6
-
3
-
-
33745752671
-
Interactions of mitochondria with the actin cytoskeleton
-
Boldogh, I.R., and Pon, L.A. (2006). Interactions of mitochondria with the actin cytoskeleton. Biochim. Biophys. Acta 1763: 450-462.
-
(2006)
Biochim. Biophys. Acta
, vol.1763
, pp. 450-462
-
-
Boldogh, I.R.1
Pon, L.A.2
-
4
-
-
46749097571
-
Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses
-
Bu, Q., Jiang, H., Li, C.B., Zhai, Q., Zhang, J., Wu, X., Sun, J., Xie, Q., and Li, C. (2008). Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses. Cell Res. 18: 756-767.
-
(2008)
Cell Res.
, vol.18
, pp. 756-767
-
-
Bu, Q.1
Jiang, H.2
Li, C.B.3
Zhai, Q.4
Zhang, J.5
Wu, X.6
Sun, J.7
Xie, Q.8
Li, C.9
-
5
-
-
1842665662
-
Mitochondrial signaling: The retrograde response
-
Butow, R.A., and Avadhani, N.G. (2004). Mitochondrial signaling: The retrograde response. Mol. Cell 14: 1-15.
-
(2004)
Mol. Cell
, vol.14
, pp. 1-15
-
-
Butow, R.A.1
Avadhani, N.G.2
-
6
-
-
62149097250
-
Approaches to defining dualtargeted proteins in Arabidopsis
-
Carrie, C., Kühn, K., Murcha, M.W., Duncan, O., Small, I.D., O'Toole, N., and Whelan, J. (2009). Approaches to defining dualtargeted proteins in Arabidopsis. Plant J. 57: 1128-1139.
-
(2009)
Plant J.
, vol.57
, pp. 1128-1139
-
-
Carrie, C.1
Kühn, K.2
Murcha, M.W.3
Duncan, O.4
Small, I.D.5
O'Toole, N.6
Whelan, J.7
-
7
-
-
33845625275
-
Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria
-
Carrie, C., Murcha, M.W., Millar, A.H., Smith, S.M., and Whelan, J. (2007). Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria. Plant Mol. Biol. 63: 97-108.
-
(2007)
Plant Mol. Biol.
, vol.63
, pp. 97-108
-
-
Carrie, C.1
Murcha, M.W.2
Millar, A.H.3
Smith, S.M.4
Whelan, J.5
-
8
-
-
56349170862
-
Membrane-tethered transcription factors in Arabidopsis thaliana: Novel regulators in stress response and development
-
Chen, Y.N., Slabaugh, E., and Brandizzi, F. (2008). Membrane-tethered transcription factors in Arabidopsis thaliana: Novel regulators in stress response and development. Curr. Opin. Plant Biol. 11: 695-701.
-
(2008)
Curr. Opin. Plant Biol.
, vol.11
, pp. 695-701
-
-
Chen, Y.N.1
Slabaugh, E.2
Brandizzi, F.3
-
9
-
-
84886458742
-
A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis
-
De Clercq, I., et al. (2013). A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. Plant Cell 25: 3472-3490.
-
(2013)
Plant Cell
, vol.25
, pp. 3472-3490
-
-
De Clercq, I.1
-
10
-
-
79955556641
-
Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis
-
Deng, Y., Humbert, S., Liu, J.X., Srivastava, R., Rothstein, S.J., and Howell, S.H. (2011). Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis. Proc. Natl. Acad. Sci. USA 108: 7247-7252.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 7247-7252
-
-
Deng, Y.1
Humbert, S.2
Liu, J.X.3
Srivastava, R.4
Rothstein, S.J.5
Howell, S.H.6
-
11
-
-
84877039003
-
Endoplasmic reticulum (ER) stress response and its physiological roles in plants
-
Deng, Y., Srivastava, R., and Howell, S.H. (2013). Endoplasmic reticulum (ER) stress response and its physiological roles in plants. Int. J. Mol. Sci. 14: 8188-8212.
-
(2013)
Int. J. Mol. Sci.
, vol.14
, pp. 8188-8212
-
-
Deng, Y.1
Srivastava, R.2
Howell, S.H.3
-
12
-
-
23744512906
-
Identification of a region of the Arabidopsis AtAOX1a promoter necessary for mitochondrial retrograde regulation of expression
-
Dojcinovic, D., Krosting, J., Harris, A.J., Wagner, D.J., and Rhoads, D.M. (2005). Identification of a region of the Arabidopsis AtAOX1a promoter necessary for mitochondrial retrograde regulation of expression. Plant Mol. Biol. 58: 159-175.
-
(2005)
Plant Mol. Biol.
, vol.58
, pp. 159-175
-
-
Dojcinovic, D.1
Krosting, J.2
Harris, A.J.3
Wagner, D.J.4
Rhoads, D.M.5
-
13
-
-
0001335087
-
Monoclonal antibodies to the alternative oxidase of higher plant mitochondria
-
Elthon, T.E., Nickels, R.L., and McIntosh, L. (1989). Monoclonal antibodies to the alternative oxidase of higher plant mitochondria. Plant Physiol. 89: 1311-1317.
-
(1989)
Plant Physiol.
, vol.89
, pp. 1311-1317
-
-
Elthon, T.E.1
Nickels, R.L.2
McIntosh, L.3
-
14
-
-
84855182059
-
Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis
-
Estavillo, G.M., et al. (2011). Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis. Plant Cell 23: 3992-4012.
-
(2011)
Plant Cell
, vol.23
, pp. 3992-4012
-
-
Estavillo, G.M.1
-
15
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
16
-
-
23244432190
-
Improved survival of very high light and oxidative stress is conferred by spontaneous gain-of-function mutations in Chlamydomonas
-
Förster, B., Osmond, C.B., and Pogson, B.J. (2005). Improved survival of very high light and oxidative stress is conferred by spontaneous gain-of-function mutations in Chlamydomonas. Biochim. Biophys. Acta 1709: 45-57.
-
(2005)
Biochim. Biophys. Acta
, vol.1709
, pp. 45-57
-
-
Förster, B.1
Osmond, C.B.2
Pogson, B.J.3
-
17
-
-
33745667787
-
Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis
-
Gadjev, I., Vanderauwera, S., Gechev, T.S., Laloi, C., Minkov, I.N., Shulaev, V., Apel, K., Inzé, D., Mittler, R., and Van Breusegem, F. (2006). Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Plant Physiol. 141: 436-445.
-
(2006)
Plant Physiol.
, vol.141
, pp. 436-445
-
-
Gadjev, I.1
Vanderauwera, S.2
Gechev, T.S.3
Laloi, C.4
Minkov, I.N.5
Shulaev, V.6
Apel, K.7
Inzé, D.8
Mittler, R.9
Van Breusegem, F.10
-
18
-
-
48549104104
-
The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress
-
Giraud, E., Ho, L.H., Clifton, R., Carroll, A., Estavillo, G., Tan, Y.F., Howell, K.A., Ivanova, A., Pogson, B.J., Millar, A.H., and Whelan, J. (2008). The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress. Plant Physiol. 147: 595-610.
-
(2008)
Plant Physiol.
, vol.147
, pp. 595-610
-
-
Giraud, E.1
Ho, L.H.2
Clifton, R.3
Carroll, A.4
Estavillo, G.5
Tan, Y.F.6
Howell, K.A.7
Ivanova, A.8
Pogson, B.J.9
Millar, A.H.10
Whelan, J.11
-
19
-
-
67650173467
-
The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a
-
Giraud, E., Van Aken, O., Ho, L.H., and Whelan, J. (2009). The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a. Plant Physiol. 150: 1286-1296.
-
(2009)
Plant Physiol.
, vol.150
, pp. 1286-1296
-
-
Giraud, E.1
Van Aken, O.2
Ho, L.H.3
Whelan, J.4
-
20
-
-
51449101034
-
Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis
-
Ho, L.H., Giraud, E., Uggalla, V., Lister, R., Clifton, R., Glen, A., Thirkettle-Watts, D., Van Aken, O., and Whelan, J. (2008). Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis. Plant Physiol. 147: 1858-1873.
-
(2008)
Plant Physiol.
, vol.147
, pp. 1858-1873
-
-
Ho, L.H.1
Giraud, E.2
Uggalla, V.3
Lister, R.4
Clifton, R.5
Glen, A.6
Thirkettle-Watts, D.7
Van Aken, O.8
Whelan, J.9
-
21
-
-
84877341291
-
Endoplasmic reticulum stress responses in plants
-
Howell, S.H. (2013). Endoplasmic reticulum stress responses in plants. Annu. Rev. Plant Biol. 64: 477-499.
-
(2013)
Annu. Rev. Plant Biol.
, vol.64
, pp. 477-499
-
-
Howell, S.H.1
-
22
-
-
58749109023
-
Genevestigator v3: A reference expression database for the metaanalysis of transcriptomes
-
Hruz, T., Laule, O., Szabo, G., Wessendorp, F., Bleuler, S., Oertle, L., Widmayer, P., Gruissem, W., and Zimmermann, P. (2008). Genevestigator v3: A reference expression database for the metaanalysis of transcriptomes. Adv. Bioinforma. 2008: 420747.
-
(2008)
Adv. Bioinforma.
, vol.2008
, pp. 420747
-
-
Hruz, T.1
Laule, O.2
Szabo, G.3
Wessendorp, F.4
Bleuler, S.5
Oertle, L.6
Widmayer, P.7
Gruissem, W.8
Zimmermann, P.9
-
23
-
-
58549108606
-
Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response
-
Iwata, Y., Fedoroff, N.V., and Koizumi, N. (2008). Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response. Plant Cell 20: 3107-3121.
-
(2008)
Plant Cell
, vol.20
, pp. 3107-3121
-
-
Iwata, Y.1
Fedoroff, N.V.2
Koizumi, N.3
-
24
-
-
17044404640
-
An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants
-
Iwata, Y., and Koizumi, N. (2005). An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants. Proc. Natl. Acad. Sci. USA 102: 5280-5285.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 5280-5285
-
-
Iwata, Y.1
Koizumi, N.2
-
25
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D.T., Taylor, W.R., and Thornton, J.M. (1992). The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8: 275-282.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
26
-
-
77949495009
-
The submergence tolerance regulator Sub1A mediates stressresponsive expression of AP2/ERF transcription factors
-
Jung, K.H., Seo, Y.S., Walia, H., Cao, P., Fukao, T., Canlas, P.E., Amonpant, F., Bailey-Serres, J., and Ronald, P.C. (2010). The submergence tolerance regulator Sub1A mediates stressresponsive expression of AP2/ERF transcription factors. Plant Physiol. 152: 1674-1692.
-
(2010)
Plant Physiol.
, vol.152
, pp. 1674-1692
-
-
Jung, K.H.1
Seo, Y.S.2
Walia, H.3
Cao, P.4
Fukao, T.5
Canlas, P.E.6
Amonpant, F.7
Bailey-Serres, J.8
Ronald, P.C.9
-
27
-
-
72049122661
-
Genome-scale screening and molecular characterization of membrane-bound transcription factors in Arabidopsis and rice
-
Kim, S.G., Lee, S., Seo, P.J., Kim, S.K., Kim, J.K., and Park, C.M. (2010). Genome-scale screening and molecular characterization of membrane-bound transcription factors in Arabidopsis and rice. Genomics 95: 56-65.
-
(2010)
Genomics
, vol.95
, pp. 56-65
-
-
Kim, S.G.1
Lee, S.2
Seo, P.J.3
Kim, S.K.4
Kim, J.K.5
Park, C.M.6
-
28
-
-
77951716870
-
ERMES-mediated ERmitochondria contacts:Molecular hubs for the regulation of mitochondrial biology
-
Kornmann, B., and Walter, P. (2010). ERMES-mediated ERmitochondria contacts:Molecular hubs for the regulation of mitochondrial biology. J. Cell Sci. 123: 1389-1393.
-
(2010)
J. Cell Sci.
, vol.123
, pp. 1389-1393
-
-
Kornmann, B.1
Walter, P.2
-
29
-
-
33846331967
-
Cross-talk between singlet oxygen-and hydrogen peroxide-dependent signaling of stress responses in Arabidopsis thaliana
-
Laloi, C., Stachowiak, M., Pers-Kamczyc, E., Warzych, E., Murgia, I., and Apel, K. (2007). Cross-talk between singlet oxygen-and hydrogen peroxide-dependent signaling of stress responses in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 104: 672-677.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 672-677
-
-
Laloi, C.1
Stachowiak, M.2
Pers-Kamczyc, E.3
Warzych, E.4
Murgia, I.5
Apel, K.6
-
30
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M.A., et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
31
-
-
38949208025
-
Core genome responses involved in acclimation to high temperature
-
Larkindale, J., and Vierling, E. (2008). Core genome responses involved in acclimation to high temperature. Plant Physiol. 146: 748-761.
-
(2008)
Plant Physiol.
, vol.146
, pp. 748-761
-
-
Larkindale, J.1
Vierling, E.2
-
32
-
-
77957772337
-
Differences in endoplasmic reticulum stress signalling kinetics determine cell survival outcome through activation of MKP-1
-
Li, B., Yi, P., Zhang, B., Xu, C., Liu, Q., Pi, Z., Xu, X., Chevet, E., and Liu, J. (2011). Differences in endoplasmic reticulum stress signalling kinetics determine cell survival outcome through activation of MKP-1. Cell. Signal. 23: 35-45.
-
(2011)
Cell. Signal.
, vol.23
, pp. 35-45
-
-
Li, B.1
Yi, P.2
Zhang, B.3
Xu, C.4
Liu, Q.5
Pi, Z.6
Xu, X.7
Chevet, E.8
Liu, J.9
-
33
-
-
77951988135
-
HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana
-
Licausi, F., van Dongen, J.T., Giuntoli, B., Novi, G., Santaniello, A., Geigenberger, P., and Perata, P. (2010). HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana. Plant J. 62: 302-315.
-
(2010)
Plant J.
, vol.62
, pp. 302-315
-
-
Licausi, F.1
van Dongen, J.T.2
Giuntoli, B.3
Novi, G.4
Santaniello, A.5
Geigenberger, P.6
Perata, P.7
-
34
-
-
77955881552
-
Mitochondrial fusion, division and positioning in plants
-
Logan, D.C. (2010). Mitochondrial fusion, division and positioning in plants. Biochem. Soc. Trans. 38: 789-795.
-
(2010)
Biochem. Soc. Trans.
, vol.38
, pp. 789-795
-
-
Logan, D.C.1
-
35
-
-
0035827588
-
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
-
Long, A.D., Mangalam, H.J., Chan, B.Y., Tolleri, L., Hatfield, G.W., and Baldi, P. (2001). Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J. Biol. Chem. 276: 19937-19944.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19937-19944
-
-
Long, A.D.1
Mangalam, H.J.2
Chan, B.Y.3
Tolleri, L.4
Hatfield, G.W.5
Baldi, P.6
-
36
-
-
84859502432
-
2-triggered retrograde signaling from chloroplasts to nucleus plays specific role in response to stress
-
2-triggered retrograde signaling from chloroplasts to nucleus plays specific role in response to stress. J. Biol. Chem. 287: 11717-11729.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 11717-11729
-
-
Maruta, T.1
Noshi, M.2
Tanouchi, A.3
Tamoi, M.4
Yabuta, Y.5
Yoshimura, K.6
Ishikawa, T.7
Shigeoka, S.8
-
37
-
-
79955639890
-
Organization and regulation of mitochondrial respiration in plants
-
Millar, A.H., Whelan, J., Soole, K.L., and Day, D.A. (2011). Organization and regulation of mitochondrial respiration in plants. Annu. Rev. Plant Biol. 62: 79-104.
-
(2011)
Annu. Rev. Plant Biol.
, vol.62
, pp. 79-104
-
-
Millar, A.H.1
Whelan, J.2
Soole, K.L.3
Day, D.A.4
-
38
-
-
84856606078
-
AP2/ ERF family transcription factors in plant abiotic stress responses
-
Mizoi, J., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2012). AP2/ ERF family transcription factors in plant abiotic stress responses. Biochim. Biophys. Acta 1819: 86-96.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 86-96
-
-
Mizoi, J.1
Shinozaki, K.2
Yamaguchi-Shinozaki, K.3
-
39
-
-
77955277976
-
ROS signalling-Specificity is required
-
Møller, I.M., and Sweetlove, L.J. (2010). ROS signalling-Specificity is required. Trends Plant Sci. 15: 370-374.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 370-374
-
-
Møller, I.M.1
Sweetlove, L.J.2
-
40
-
-
58249093939
-
How mitochondria produce reactive oxygen species
-
Murphy, M.P. (2009). How mitochondria produce reactive oxygen species. Biochem. J. 417: 1-13.
-
(2009)
Biochem. J.
, vol.417
, pp. 1-13
-
-
Murphy, M.P.1
-
41
-
-
84855647251
-
Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor
-
Nagashima, Y., Mishiba, K., Suzuki, E., Shimada, Y., Iwata, Y., and Koizumi, N. (2011). Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor. Sci. Rep. 1: 29.
-
(2011)
Sci. Rep.
, vol.1
, pp. 29
-
-
Nagashima, Y.1
Mishiba, K.2
Suzuki, E.3
Shimada, Y.4
Iwata, Y.5
Koizumi, N.6
-
42
-
-
84856594358
-
NAC transcription factors in plant abiotic stress responses
-
Nakashima, K., Takasaki, H., Mizoi, J., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2012). NAC transcription factors in plant abiotic stress responses. Biochim. Biophys. Acta 1819: 97-103.
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 97-103
-
-
Nakashima, K.1
Takasaki, H.2
Mizoi, J.3
Shinozaki, K.4
Yamaguchi-Shinozaki, K.5
-
43
-
-
34548487513
-
A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants
-
Nelson, B.K., Cai, X., and Nebenführ, A. (2007). A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J. 51: 1126-1136.
-
(2007)
Plant J.
, vol.51
, pp. 1126-1136
-
-
Nelson, B.K.1
Cai, X.2
Nebenführ, A.3
-
44
-
-
84873314349
-
Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses
-
Ng, S., et al. (2013). Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses. J. Biol. Chem. 288: 3449-3459.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 3449-3459
-
-
Ng, S.1
-
45
-
-
84863331821
-
Chloroplast-mediated activation of plant immune signalling in Arabidopsis
-
Nomura, H., et al. (2012). Chloroplast-mediated activation of plant immune signalling in Arabidopsis. Nat. Commun. 3: 926.
-
(2012)
Nat. Commun.
, vol.3
, pp. 926
-
-
Nomura, H.1
-
46
-
-
77955579160
-
Genome-wide analysis of NAC transcription factor family in rice
-
Nuruzzaman, M., Manimekalai, R., Sharoni, A.M., Satoh, K., Kondoh, H., Ooka, H., and Kikuchi, S. (2010). Genome-wide analysis of NAC transcription factor family in rice. Gene 465: 30-44.
-
(2010)
Gene
, vol.465
, pp. 30-44
-
-
Nuruzzaman, M.1
Manimekalai, R.2
Sharoni, A.M.3
Satoh, K.4
Kondoh, H.5
Ooka, H.6
Kikuchi, S.7
-
47
-
-
13744249762
-
NAC transcription factors: Structurally distinct, functionally diverse
-
Olsen, A.N., Ernst, H.A., Leggio, L.L., and Skriver, K. (2005). NAC transcription factors: Structurally distinct, functionally diverse. Trends Plant Sci. 10: 79-87.
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 79-87
-
-
Olsen, A.N.1
Ernst, H.A.2
Leggio, L.L.3
Skriver, K.4
-
48
-
-
0031727086
-
Improved staining of F-actin and co-localization of mitochondria in plant cells
-
Olyslaegers, G., and Verbelen, J.-P. (1998). Improved staining of F-actin and co-localization of mitochondria in plant cells. J. Microsc. 192: 73-77.
-
(1998)
J. Microsc.
, vol.192
, pp. 73-77
-
-
Olyslaegers, G.1
Verbelen, J.-P.2
-
49
-
-
10744233719
-
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana
-
Ooka, H., et al. (2003). Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res. 10: 239-247.
-
(2003)
DNA Res.
, vol.10
, pp. 239-247
-
-
Ooka, H.1
-
50
-
-
84876523227
-
Hydrogen peroxide-a central hub for information flow in plant cells
-
Petrov, V.D., and Van Breusegem, F. (2012). Hydrogen peroxide-a central hub for information flow in plant cells. AoB Plants 2012: pls014.
-
(2012)
AoB Plants
, vol.2012
-
-
Petrov, V.D.1
Van Breusegem, F.2
-
51
-
-
77955268374
-
Plastidial retrograde signalling-A true "plastid factor" or just metabolite signatures?
-
Pfannschmidt, T. (2010). Plastidial retrograde signalling-A true "plastid factor" or just metabolite signatures? Trends Plant Sci. 15: 427-435.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 427-435
-
-
Pfannschmidt, T.1
-
52
-
-
35248824214
-
Mitochondria-endoplasmic reticulum choreography: Structure and signaling dynamics
-
Pizzo, P., and Pozzan, T. (2007). Mitochondria-endoplasmic reticulum choreography: Structure and signaling dynamics. Trends Cell Biol. 17: 511-517.
-
(2007)
Trends Cell Biol.
, vol.17
, pp. 511-517
-
-
Pizzo, P.1
Pozzan, T.2
-
53
-
-
84859478173
-
Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants
-
Ramel, F., Birtic, S., Ginies, C., Soubigou-Taconnat, L., Triantaphylidès, C., and Havaux, M. (2012). Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants. Proc. Natl. Acad. Sci. USA 109: 5535-5540.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 5535-5540
-
-
Ramel, F.1
Birtic, S.2
Ginies, C.3
Soubigou-Taconnat, L.4
Triantaphylidès, C.5
Havaux, M.6
-
54
-
-
33947188157
-
Mitochondrial retrograde regulation in plants
-
Rhoads, D.M., and Subbaiah, C.C. (2007). Mitochondrial retrograde regulation in plants. Mitochondrion 7: 177-194.
-
(2007)
Mitochondrion
, vol.7
, pp. 177-194
-
-
Rhoads, D.M.1
Subbaiah, C.C.2
-
55
-
-
0033828167
-
A genomic perspective on plant transcription factors
-
Riechmann, J.L., and Ratcliffe, O.J. (2000). A genomic perspective on plant transcription factors. Curr. Opin. Plant Biol. 3: 423-434.
-
(2000)
Curr. Opin. Plant Biol.
, vol.3
, pp. 423-434
-
-
Riechmann, J.L.1
Ratcliffe, O.J.2
-
56
-
-
77951251671
-
Proteolytic processing of an Arabidopsis membranebound NAC transcription factor is triggered by cold-induced changes in membrane fluidity
-
Seo, P.J., Kim, M.J., Song, J.S., Kim, Y.S., Kim, H.J., and Park, C.M. (2010). Proteolytic processing of an Arabidopsis membranebound NAC transcription factor is triggered by cold-induced changes in membrane fluidity. Biochem. J. 427: 359-367.
-
(2010)
Biochem. J.
, vol.427
, pp. 359-367
-
-
Seo, P.J.1
Kim, M.J.2
Song, J.S.3
Kim, Y.S.4
Kim, H.J.5
Park, C.M.6
-
57
-
-
33644843425
-
Mitochondria as a connected population: Ensuring continuity of the mitochondrial genome during plant cell dedifferentiation through massive mitochondrial fusion
-
Sheahan, M.B., McCurdy, D.W., and Rose, R.J. (2005). Mitochondria as a connected population: Ensuring continuity of the mitochondrial genome during plant cell dedifferentiation through massive mitochondrial fusion. Plant J. 44: 744-755.
-
(2005)
Plant J.
, vol.44
, pp. 744-755
-
-
Sheahan, M.B.1
McCurdy, D.W.2
Rose, R.J.3
-
58
-
-
1042278630
-
Organelle inheritance in plant cell division: The actin cytoskeleton is required for unbiased inheritance of chloroplasts, mitochondria and endoplasmic reticulum in dividing protoplasts
-
Sheahan, M.B., Rose, R.J., and McCurdy, D.W. (2004). Organelle inheritance in plant cell division: The actin cytoskeleton is required for unbiased inheritance of chloroplasts, mitochondria and endoplasmic reticulum in dividing protoplasts. Plant J. 37: 379-390.
-
(2004)
Plant J.
, vol.37
, pp. 379-390
-
-
Sheahan, M.B.1
Rose, R.J.2
McCurdy, D.W.3
-
59
-
-
70449592011
-
A bioinformatic analysis of NAC genes for plant cell wall development in relation to lignocellulosic bioenergy production
-
Shen, H., Yin, Y.B., Chen, F., Xu, Y., and Dixon, R.A. (2009). A bioinformatic analysis of NAC genes for plant cell wall development in relation to lignocellulosic bioenergy production. BioEnergy Res. 2: 217-232.
-
(2009)
BioEnergy Res.
, vol.2
, pp. 217-232
-
-
Shen, H.1
Yin, Y.B.2
Chen, F.3
Xu, Y.4
Dixon, R.A.5
-
60
-
-
84878241444
-
BINDING PROTEIN is a master regulator of the endoplasmic reticulum stress sensor/transducer bZIP28 in Arabidopsis
-
Srivastava, R., Deng, Y., Shah, S., Rao, A.G., and Howell, S.H. (2013). BINDING PROTEIN is a master regulator of the endoplasmic reticulum stress sensor/transducer bZIP28 in Arabidopsis. Plant Cell 25: 1416-1429.
-
(2013)
Plant Cell
, vol.25
, pp. 1416-1429
-
-
Srivastava, R.1
Deng, Y.2
Shah, S.3
Rao, A.G.4
Howell, S.H.5
-
61
-
-
84875871162
-
Structural and mechanistic principles of intramembrane proteolysis-Lessons from rhomboids
-
Strisovsky, K. (2013). Structural and mechanistic principles of intramembrane proteolysis-Lessons from rhomboids. FEBS J. 280: 1579-1603.
-
(2013)
FEBS J.
, vol.280
, pp. 1579-1603
-
-
Strisovsky, K.1
-
62
-
-
72149124813
-
Sequencespecific intramembrane proteolysis: Identification of a recognition motif in rhomboid substrates
-
Strisovsky, K., Sharpe, H.J., and Freeman, M. (2009). Sequencespecific intramembrane proteolysis: Identification of a recognition motif in rhomboid substrates. Mol. Cell 36: 1048-1059.
-
(2009)
Mol. Cell
, vol.36
, pp. 1048-1059
-
-
Strisovsky, K.1
Sharpe, H.J.2
Freeman, M.3
-
63
-
-
80053426242
-
A chloroplast envelope-bound PHD transcription factor mediates chloroplast signals to the nucleus
-
Sun, X., Feng, P., Xu, X., Guo, H., Ma, J., Chi, W., Lin, R., Lu, C., and Zhang, L. (2011). A chloroplast envelope-bound PHD transcription factor mediates chloroplast signals to the nucleus. Nat. Commun. 2: 477.
-
(2011)
Nat. Commun.
, vol.2
, pp. 477
-
-
Sun, X.1
Feng, P.2
Xu, X.3
Guo, H.4
Ma, J.5
Chi, W.6
Lin, R.7
Lu, C.8
Zhang, L.9
-
64
-
-
0027214202
-
Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development
-
Susek, R.E., Ausubel, F.M., and Chory, J. (1993). Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development. Cell 74: 787-799.
-
(1993)
Cell
, vol.74
, pp. 787-799
-
-
Susek, R.E.1
Ausubel, F.M.2
Chory, J.3
-
65
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
66
-
-
4544236638
-
Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter
-
Tran, L.S., Nakashima, K., Sakuma, Y., Simpson, S.D., Fujita, Y., Maruyama, K., Fujita, M., Seki, M., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2004). Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell 16: 2481-2498.
-
(2004)
Plant Cell
, vol.16
, pp. 2481-2498
-
-
Tran, L.S.1
Nakashima, K.2
Sakuma, Y.3
Simpson, S.D.4
Fujita, Y.5
Maruyama, K.6
Fujita, M.7
Seki, M.8
Shinozaki, K.9
Yamaguchi-Shinozaki, K.10
-
67
-
-
0035913908
-
Drosophila rhomboid-1 defines a family of putative intramembrane serine proteases
-
Urban, S., Lee, J.R., and Freeman, M. (2001). Drosophila rhomboid-1 defines a family of putative intramembrane serine proteases. Cell 107: 173-182.
-
(2001)
Cell
, vol.107
, pp. 173-182
-
-
Urban, S.1
Lee, J.R.2
Freeman, M.3
-
68
-
-
71249116157
-
Defining the mitochondrial stress response in Arabidopsis thaliana
-
Van Aken, O., Zhang, B., Carrie, C., Uggalla, V., Paynter, E., Giraud, E., and Whelan, J. (2009). Defining the mitochondrial stress response in Arabidopsis thaliana. Mol. Plant 2: 1310-1324.
-
(2009)
Mol. Plant
, vol.2
, pp. 1310-1324
-
-
Van Aken, O.1
Zhang, B.2
Carrie, C.3
Uggalla, V.4
Paynter, E.5
Giraud, E.6
Whelan, J.7
-
69
-
-
84877028054
-
AtWRKY40 and AtWRKY63 modulate the expression of stressresponsive nuclear genes encoding mitochondrial and chloroplast proteins
-
Van Aken, O., Zhang, B., Law, S., Narsai, R., and Whelan, J. (2013). AtWRKY40 and AtWRKY63 modulate the expression of stressresponsive nuclear genes encoding mitochondrial and chloroplast proteins. Plant Physiol. 162: 254-271.
-
(2013)
Plant Physiol.
, vol.162
, pp. 254-271
-
-
Van Aken, O.1
Zhang, B.2
Law, S.3
Narsai, R.4
Whelan, J.5
-
70
-
-
0036009370
-
Plant mitochondria move on F-actin, but their positioning in the cortical cytoplasm depends on both F-actin and microtubules
-
Van Gestel, K., Köhler, R.H., and Verbelen, J.P. (2002). Plant mitochondria move on F-actin, but their positioning in the cortical cytoplasm depends on both F-actin and microtubules. J. Exp. Bot. 53: 659-667.
-
(2002)
J. Exp. Bot.
, vol.53
, pp. 659-667
-
-
Van Gestel, K.1
Köhler, R.H.2
Verbelen, J.P.3
-
72
-
-
84864447566
-
Dual location of the mitochondrial preprotein transporters B14.7 and Tim23-2 in complex I and the TIM17: 23 complex in Arabidopsis links mitochondrial activity and biogenesis
-
Wang, Y., Carrie, C., Giraud, E., Elhafez, D., Narsai, R., Duncan, O., Whelan, J., andMurcha, M.W. (2012). Dual location of the mitochondrial preprotein transporters B14.7 and Tim23-2 in complex I and the TIM17: 23 complex in Arabidopsis links mitochondrial activity and biogenesis. Plant Cell. 24: 2675-2695.
-
(2012)
Plant Cell.
, vol.24
, pp. 2675-2695
-
-
Wang, Y.1
Carrie, C.2
Giraud, E.3
Elhafez, D.4
Narsai, R.5
Duncan, O.6
Whelan, J.7
Murcha, M.W.8
-
73
-
-
4744369492
-
Green fluorescent protein fusions to Arabidopsis fimbrin 1 for spatio-temporal imaging of F-actin dynamics in roots
-
Wang, Y.S., Motes, C.M., Mohamalawari, D.R., and Blancaflor, E.B. (2004). Green fluorescent protein fusions to Arabidopsis fimbrin 1 for spatio-temporal imaging of F-actin dynamics in roots. Cell Motil. Cytoskeleton 59: 79-93.
-
(2004)
Cell Motil. Cytoskeleton
, vol.59
, pp. 79-93
-
-
Wang, Y.S.1
Motes, C.M.2
Mohamalawari, D.R.3
Blancaflor, E.B.4
-
74
-
-
42449103989
-
Coordination of gene expression between organellar and nuclear genomes
-
Woodson, J.D., and Chory, J. (2008). Coordination of gene expression between organellar and nuclear genomes. Nat. Rev. Genet. 9: 383-395.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 383-395
-
-
Woodson, J.D.1
Chory, J.2
-
75
-
-
84859071143
-
JUNGBRUNNEN1, a reactive oxygen speciesresponsive NAC transcription factor, regulates longevity in Arabidopsis
-
Wu, A., et al. (2012). JUNGBRUNNEN1, a reactive oxygen speciesresponsive NAC transcription factor, regulates longevity in Arabidopsis. Plant Cell 24: 482-506.
-
(2012)
Plant Cell
, vol.24
, pp. 482-506
-
-
Wu, A.1
-
76
-
-
70449524632
-
Dual function of Arabidopsis ATAF1 in abiotic and biotic stress responses
-
Wu, Y., Deng, Z., Lai, J., Zhang, Y., Yang, C., Yin, B., Zhao, Q., Zhang, L., Li, Y., Yang, C., and Xie, Q. (2009). Dual function of Arabidopsis ATAF1 in abiotic and biotic stress responses. Cell Res. 19: 1279-1290.
-
(2009)
Cell Res.
, vol.19
, pp. 1279-1290
-
-
Wu, Y.1
Deng, Z.2
Lai, J.3
Zhang, Y.4
Yang, C.5
Yin, B.6
Zhao, Q.7
Zhang, L.8
Li, Y.9
Yang, C.10
Xie, Q.11
-
77
-
-
84862700839
-
Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes
-
Xiao, Y., Savchenko, T., Baidoo, E.E., Chehab, W.E., Hayden, D.M., Tolstikov, V., Corwin, J.A., Kliebenstein, D.J., Keasling, J.D., and Dehesh, K. (2012). Retrograde signaling by the plastidial metabolite MEcPP regulates expression of nuclear stress-response genes. Cell 149: 1525-1535.
-
(2012)
Cell
, vol.149
, pp. 1525-1535
-
-
Xiao, Y.1
Savchenko, T.2
Baidoo, E.E.3
Chehab, W.E.4
Hayden, D.M.5
Tolstikov, V.6
Corwin, J.A.7
Kliebenstein, D.J.8
Keasling, J.D.9
Dehesh, K.10
-
78
-
-
80052341399
-
Identification of recognition sequence of ANAC078 protein by the cyclic amplification and selection of targets technique
-
Yabuta, Y., Morishita, T., Kojima, Y., Maruta, T., Nishizawa-Yokoi, A., and Shigeoka, S. (2010). Identification of recognition sequence of ANAC078 protein by the cyclic amplification and selection of targets technique. Plant Signal. Behav. 5: 695-697.
-
(2010)
Plant Signal. Behav.
, vol.5
, pp. 695-697
-
-
Yabuta, Y.1
Morishita, T.2
Kojima, Y.3
Maruta, T.4
Nishizawa-Yokoi, A.5
Shigeoka, S.6
-
79
-
-
21244433634
-
A reporter gene system used to study developmental expression of alternative oxidase and isolate mitochondrial retrograde regulation mutants in Arabidopsis
-
Zarkovic, J., Anderson, S.L., and Rhoads, D.M. (2005). A reporter gene system used to study developmental expression of alternative oxidase and isolate mitochondrial retrograde regulation mutants in Arabidopsis. Plant Mol. Biol. 57: 871-888.
-
(2005)
Plant Mol. Biol.
, vol.57
, pp. 871-888
-
-
Zarkovic, J.1
Anderson, S.L.2
Rhoads, D.M.3
-
80
-
-
0036999615
-
Salt and drought stress signal transduction in plants
-
Zhu, J.K. (2002). Salt and drought stress signal transduction in plants. Annu. Rev. Plant Biol. 53: 247-273.
-
(2002)
Annu. Rev. Plant Biol.
, vol.53
, pp. 247-273
-
-
Zhu, J.K.1
-
81
-
-
84878869431
-
Cytokinin response factor 6 negatively regulates leaf senescence and is induced in response to cytokinin and numerous abiotic stresses
-
Zwack, P.J., Robinson, B.R., Risley, M.G., and Rashotte, A.M. (2013). Cytokinin response factor 6 negatively regulates leaf senescence and is induced in response to cytokinin and numerous abiotic stresses. Plant Cell Physiol. 54: 971-981.
-
(2013)
Plant Cell Physiol.
, vol.54
, pp. 971-981
-
-
Zwack, P.J.1
Robinson, B.R.2
Risley, M.G.3
Rashotte, A.M.4
|