Effects of soil organic matter and bacterial community shift on bioremediation ofdiesel-contaminated soil

International Biodeterioration and Biodegradation

Volumn 85, Issue , 2013, Pages 661-670

  Grace Liu, Pao Wen ^a   Chang, Tsung Chain ^b   Chen, Chih Hung ^b   Wang, Ming Zhi ^a   Hsu, Han Wei ^a  

^a CHUNG HWA UNIVERSITY OF MEDICAL TECHNOLOGY   (Taiwan)

^b NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

Bacteria community; Intergenic spacer (ITS) microarray; Nonmetric multidimensional scaling (MDS); Soil organic matter; Terminal restriction fragment length polymorphism (T RFLP); Total petroleum hydrocarbons

Indexed keywords

BACTERIA COMMUNITY; INTERGENIC SPACERS; NON-METRIC MULTIDIMENSIONAL SCALING; SOIL ORGANIC MATTERS; TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISMS; TOTAL PETROLEUM HYDROCARBONS;

BIOGEOCHEMISTRY; BIOLOGICAL MATERIALS; BIOREMEDIATION; BIOTECHNOLOGY; DEGRADATION; DIESEL FUELS; ORGANIC COMPOUNDS; PETROLEUM CHEMISTRY; SOIL POLLUTION; SOILS;

BACTERIA;

BACTERIUM; BIOREMEDIATION; COMMUNITY DYNAMICS; DIESEL; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; SOIL MICROORGANISM; SOIL ORGANIC MATTER; SOIL POLLUTION; TRANSFORMATION;

BACTERIA (MICROORGANISMS);

EID: 84886237205     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2013.01.010     Document Type: Article

References (58)

1. Alexander M. Ageing, bioavailability, and overestimation of risk from environmental pollutants. Environmental Science and Technology 2000, 34:4259-4265.
2. Andrew S.W., Mark J.B. Bacterial community structure and physiological state within an industrial phenol bioremediation system. Applied and Environmental Microbiology 2000, 66:2400-2407.
3. Bouchez M., Blanchet D., Vandecasteele J.P. Degradation of polycyclic aromatic hydrocarbons by pure strains and by defined strain associations: inhibition phenomena and cometabolism. Applied Microbiology and Biotechnology 1995, 43:156-164.
4. Boopathy R. Factors limiting bioremediation technologies. Bioresource Technology 2000, 74:63-67.
5. Chaineau C.H., Morel J.L., Oudot J. Microbial degradation in soil microcosms of fuel oil hydrocarbons from drilling cuttings. Environmental Science and Technology 1995, 29:1615-1621.
6. Che, M.D., 2002. Conservative cost estimate including investigation and monitoring expenses, soil and groundwater remediation conference proceeding, Taipei.
7. Chiou C.T. Partition and Adsorption of Organic Contaminants in Environmental Systems 2002, Wiley Interscience, Hoboken, N.J., USA.
8. Chaineau C.H., Yepremian C., Vidalie J.F., Ducreus J., Ballerini D. Bioremediation of a crude oil-polluted soil: biodegradtion, leaching and toxicity assessments. Water Air and Soil Pollution 2003, 144:419-440.
9. Chaillan F., Flèche A.L., Bury E., Phantavong Y-h., Grimont P., Saliot A., Oudot J. Identification and biodegradation potential of tropical aerobic hydrocarbon-degrading microorganisms. Research in Microbiology 2004, 155:587-595.
10. De Jonge H., Freijer J.I., Verstraten J.M., Westerveld J., Van Der Wielen F.W.M. Relation between bioavailability and fuel oil hydrocarbon composition in contaminated soils. Environmental Science and Technology 1997, 31:771-775.
11. Dollhopf S.L., Hashsham S.A., Tiedje J.M. Interpreting 16S rDNA T-RFLP data: application of self-organizing maps and principal component analysis to describe community dynamics and convergence. Microbial Ecology 2001, 42:495-505.
12. Das K., Mukherjee A.K. Crude petroleum-oil biodegradation efficiency of Bacillus subtilis and Pseudomonas aeruginosa strains isolated from a petroleum-oil contaminated soil from North-East India. Bioresource Technology 2007, 98:1339-1345.
13. Ferris M.J., Muyzer G., Ward D.M. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Applied and Environmental Microbiology 1996, 62:340-346.
14. Hatzinger P.B., Alexander M. Effect of aging of chemicals in soil on their biodegradability and extractability. Environmental Science and Technology 1995, 29:537-545.
15. Huesemann M.H. Incomplete hydrocarbon biodegradation in contaminated soils: limitations in bioavailability or inherent recalcitrance?. Bioremediation Journal 1997, 1:27-39.
16. Hsiao C.R., Huang L., Bouchara J.P., Barton R., Li H.C., Chang T.C. Identification of medically important molds by an oligonucleotide array. Journal of Clinical Microbiology 2005, 43:3760-3768.
17. Hayes M.H.B., Tseng T.Y., Wang M.K. Chemistry of soil organic matter. Taiwan Journal For Science 2007, 22:215-226.
18. Joergensen R.G., Figge R.M., Kupsch L. Microbial decomposition of fuel oil after compost addition to soil. Zeitschrift für Pflanzenernährung und Bodenkunde 1997, 160:21-24.
19. Joo H.S., Shoda M., Phae C.G. Degradation of diesel oil in soil using a food waste composting process. Biodegradation 2007, 18:597-605.
20. Kane M.D., Poulsen L.K., Stahl D.A. Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Applied and Environmental Microbiology 1993, 59:682-686.
21. Kapley A., Purohit H.J., Chhatre S., Shanker R., Chakrabarti T., Khanna P. Osmotolerance and hydrocarbon degradation by a genetically engineered microbial consortium. Bioresource Technology 1999, 67:241-245.
22. Kaplan C.W., Kitts C.L. Bacterial succession in a petroleum land treatment unit. Applied and Environmental Microbiology 2004, 70:1777-1786.
23. Kao, C.H., 2008. Phase study on three-groups hydrocarbon bioremediation of high oil contaminated soil with different microorganisms, M.S. Thesis. Department of Environmental Engineering, National Cheng Kung University, Tainan, Taiwan.
24. Kwapisz E., Wszelaka J., Marchut O., Bielecki S. The effect of nitrate and ammonium ions on kinetics of diesel oil degradation by Gordonia alkanivorans S7. International Biodeterioration and Biodegradation 2008, 61:214-222.
25. Liu W.T., Marsh T., Cheng L.H., Forney L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 1997, 63:4156-4522.
26. Lazar I., Dobrota S., Voicu A., Stefanescu M., Sandulescu L., Petrisor I.G. Microbial degradation of waste hydrocarbons in oily sludge from some Romanian oil fields. Journal of Petroleum Science and Engineering 1999, 22:151-160.
27. Lukow T., Dunfield P.F., Liesack W. Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants. FEMS Microbiology Ecology 2000, 32:241-247.
28. Lin T.C., Young C.C., Ho M.J., Yeh M.S., Chou C.L., Wei Y.H., Chang J.S. Characterization of floating activity of indigenous diesel-assimilating bacterial isolates. Journal of Bioscience Bioengineering 2005, 99:466-472.
29. Lee S.H., Lee S., Kim D.Y., Kim J.G. Degradation characteristics of waste lubricants under different nutrient conditions. Journal of Hazardous Materials 2007, 143:65-72.
30. Leaw S.N., Chang H.C., Barton R., Bouchara J.P., Chang T.C. Identification of medically important Candida and non-Candida yeast species by an oligonucleotide array. Journal of Clinical Microbiology 2007, 45:2220-2229.
31. Lin T.C., Chang J.S., Young C.C. Exopolysaccharides produced by Gordonia alkanivorans enhance bacterial degradation activity for diesel. Bioresource Technology 2008, 30:1201-1206.
32. Liu P.W.G., Whang L.M., Chang T.C., Tseng I.C., Pan P.T., Cheng S.S. Verification of necessity for bioaugmentation: lessons from two batch case studies for bioremediation of diesel-contaminated soils. Journal of Chemical Technology Biotechnology 2009, 84:808-819.
33. Liu P.W.G., Chang T.C., Whang L.M., Kao C.H., Pan P.T., Cheng S.S. Bioremediation of petroleum hydrocarbon contaminated soil: effects of strategies and microbial community shift. International Biodeterioration and Biodegradation 2011, 65:1119-1127.
34. Liu P.W.G., Wang S.Y., Huang S.G., Wang M.Z. Effects of soil organic matter and ageing on remediation of diesel oil-contaminated soil and on the microbial ecology. Environmental Technology 2012, 33:2661-2672.
35. Mohn W.W., Stewart G.R. Limiting factors for hydrocarbon biodegradation at low temperature in Arctic soils. Soil Biology and Biochemistry 2000, 32:1161-1172.
36. Margesin R., Schinner F. Bioremediation (natural attenuation and biostimulation) of diesel-oil-contaminated soil in an alpine glacier skiing area. Applied and Environmental Microbiology 2001, 67:3127-3133.
37. Mishira S., Jyot J., Kuhad R.C., Lal B. Evaluation of inoculum addition to stimulate in situ bioremediation of oily-sludge-contaminated soil. Applied and Environmental Microbiology 2001, 67:1675-1681.
38. Mohn W.W., Radziminski C.Z., Fortin M.C., Reimer K.J. On site bioremediation of hydrocarbon-contaminated Arctic tundra soils in inoculated biopiles. Applied Microbiology and Biotechnology 2001, 57:242-247.
39. Muckian L., Grant R., Doyle E., Clipson N. Bacterial community structure in soils contaminated by polycyclic aromatic hydrocarbons. Chemosphere 2007, 68:1535-1541.
40. Nam K., Chung N., Alexander M. Relationship between organic matter content of soil and the sequestration of phenanthrene. Environmental Science and Technology 1998, 32:785-3788.
41. Nocentini M., Pinelli D., Fava F. Bioremediation of a soil contaminated by hydrocarbon mixtures: the residual concentration problem. Chemosphere 2000, 41:1115-1123.
42. Ortega-Calvo J.J., Lahlou M., Saiz-Jimenez C. Effect of organic matter and clays on the biodegradation of phenanthrene in soils. International Biodeterioration and Biodegradation 1997, 40:101-106.
43. Oudot J., Merlin F.X., Pinvidic P. Weathering rates of oil components in a bioremediation experiment in estuarine sediments. Marine Environmental Research 1998, 45:113-125.
44. Piatt J.J., Brusseau M.L. Rate limiting sorption of hydro-phobic organic compounds by soils with well characterised organic matter. Environmental Science and Technology 1998, 32:1604-1608.
45. Park J.A., Hur J.M., Jang B.K., Son B.S. Evaluation of compost addition and its effects on biodegradation of diesel-oil in contaminated soil composting. Journal of Industrial and Engineering Chemistry 2001, 7:127-136.
46. Reid B.J., Jones K.C., Semple K.T. Bioavailability of persistent organic pollutants in soils and sediments - a perspective on mechanisms, consequences and assessment. Environmental Pollution 2000, 108:103-112.
47. Roling W.F.M., Milner M.G., Jones D.M., Fratepietro F., Swannell R.P.J., Daniel F., Head I.M. Bacterial community dynamics and hydrocarbon degradation during a field-scale evaluation of bioremediation on a mudflat beach contaminated with buried oil. Applied and Environmental Microbiology 2004, 70:2603-2613.
48. Ros M., Rodríguez I., García C., Hernández T. Microbial communities involved in the bioremediation of an aged recalcitrant hydrocarbon polluted soil by using organic amendments. Bioresource Technology 2010, 101:6916-6923.
49. Tiedje J.M., Brempong S.A., Nusslein K., Marsh T.L., Flynn S.J. Opening the black box of soil microbial diversity. Applied Soil Ecology 1999, 13:109-122.
50. Torsvik V., Ovreas L. Microbial diversity and function in soil: from genes to ecosystems. Current Opinion in Biotechnology 2002, 5:240-245.
51. Tung S.K., Teng L.J., Vaneechoutte M., Chen H.M., Chang T.C. Array-based identification of species of the genera Abiotrophia, Enterococcus, Granulicatella, and Streptococcus. Journal of Clinical Microbiology 2006, 44:4414-4424.
52. US Environmental Protection Agency Nonhalogenated Organics Using GC/FID. Test Methods for Evaluating Solid Waste, Method 8015B 1995.
53. US Environmental Protection Agency Ultrasonic Extraction. Test Methods for Evaluating Solid Waste Physical/Chemical Methods December 1996, Method 3550 B. 2nd Revision.
54. US Environmental Protection Agency Application, Performance, and Costs of Biotreatment Technologies for Contaminated Soils September 2002, EPA/600/R-03/037, Battelle Contract No. 68-C-00-185.
55. Uyttebroek M., Ortega-Calvo J.-J., Breugelmans P., Springael D. Comparison of mineralization of solid-sorbed phenanthrene by polycyclic aromatic hydrocarbon (PAH)-degrading Mycobacterium spp. and Sphingomonas spp. Applied Microbiology and Biotechnology 2006, 72:828-829.
56. Venosa A.D., Suidan M.T., King D., Wrenn B.A. Use of hope as a conservative biomarker for monitoring the bioremediation effectiveness of crude oil contaminating a sandy beach. Journal of Industrial Microbiology and Biotechnology 1997, 18:131-139.
57. Yannarell A.C., Triplett E.W. Within- and between-lake variability in the composition of bacterioplankton communities: investigations using multiple spatial scales. Applied and Environmental Microbiology 2004, 70:214-223.
58. Young C.C., Lin T.C., Yeh M.S., Shen F.T., Chang J.S. Identification and kinetic characteristics of an indigenous diesel-degrading Gordonia alkanivorans Strain. World Journal of Microbiology and Biotechnology 2005, 21:1409-1414.