Microbial communities involved in the bioremediation of an aged recalcitrant hydrocarbon polluted soil by using organic amendments

Bioresource Technology

Volumn 101, Issue 18, 2010, Pages 6916-6923

  Ros, M ^a   Rodriguez I ^a   Garcia C ^a   Hernandez T ^a  

^a RESEARCH GROUP ON QUALITY   (Spain)

Author keywords

Actinobacteria; Ascomycota; DGGE; Hydrocarbon contaminated soil; Sewage sludge

Indexed keywords

BIODEGRADATION; BIOREMEDIATION; BIOTECHNOLOGY; ELECTROPHORESIS; HYDROCARBONS; POLLUTION; SEWAGE SLUDGE; SOILS;

ACTINOBACTERIA; ASCOMYCOTA; BIODEGRADATION PROCESS; CONTAMINATED SOILS; DENATURING GRADIENT GEL ELECTROPHORESES (DGGE); DGGE; HYDROCARBON DEGRADATION; MICROBIAL COMMUNITIES;

SOIL POLLUTION;

HYDROCARBON; ORGANIC COMPOUND;

BACTERIUM; BIODEGRADATION; BIOREMEDIATION; FUNGUS; HYDROCARBON; MICROBIAL COMMUNITY; SEWAGE; SLUDGE; SOIL AMENDMENT; SOIL POLLUTION;

ACTINOBACTERIA; AGED; AGRICULTURAL LAND; ARTICLE; ASCOMYCETES; BIODEGRADATION; BIOREMEDIATION; COMMUNITY STRUCTURE; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; FUNGAL COMMUNITY; MICROBIAL COMMUNITY; NONHUMAN; PRIORITY JOURNAL; SEWAGE; SLUDGE; SOIL AMENDMENT; SOIL POLLUTION; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; SOIL POLLUTANT;

ACTINOBACTERIA; ASCOMYCOTA; BACTERIA (MICROORGANISMS);

ACTINOBACTERIA; ASCOMYCOTA; BIODEGRADATION, ENVIRONMENTAL; HYDROCARBONS; ORGANIC CHEMICALS; SEWAGE; SOIL POLLUTANTS;

EID: 77953179929     PISSN: 09608524     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biortech.2010.03.126     Document Type: Article

References (54)

1. Adesodum, J.K., Mbagwu, J.S.C., 2008. Distribution of heavy metals and hydrocarbon contents in an alfisol contaminated with waste-lubricating oil amended with organic wastes. Bioresour. Technol. 99, 3195-3204.
2. Alexander, M., 2000. Aging, bioavailability, and overestimation of risk from environmental pollutants. Environ. Sci. Technol. 34, 4259-4265.
3. APHA, 1995. Standard Methods for the Examination of Water and Wastewater, 18th ed. APHA-AWWA-WEF.
4. Bastida, F., Kandeler, E., Moreno, J.L., Ros, M., García, C., Hernández, T., 2008. Application of fresh and composted organic wastes modifies structure, size and activity of soil microbial community under semi-arid climate. Appl. Soil Ecol. 2008, 318-329.
5. Bradock, J.F., Ruth, M.L., Catterall, P.H., Walworth, J.L., McCarthynd, K.A., 1997. Enhancement and inhibition of microbial activity in hydrocarbon-contaminated artic soils: implications for nutrient-amended bioremediation. Environ. Sci. Technol. 31, 2078-2084.
6. Casellas, M., Grifoll, M., Bayona, J.M., Solanas, A.M., 1997. New metabolites in the degradation of fluorene by Arthrobacter sp. strain F101. Appl. Environ. Microbiol. 63, 819-826.
7. Castellanos, J.Z., Pratt, P.F., 1981. Mineralization of manure nitrogen-correlation with laboratory indexes. Soil Sci. Soc. Am. J. 45, 354-357.
8. Chang, S.H., Devinny, J.S., 2000. Bioaugmentation for soil bioremediation. In: Wise, D.L., Trantolo, D.J., Cichon, E.J., Inyang, H.I., Stottmeister, U. (Eds.), Bioremediation of Contaminated Soils. Marcel Dekker, Inc., New York.
9. Contreras-Ramos, S., Álvarez-Bernal, D., Montes-Molina, J.A., Van Cleemput, O., Dendooven, L., 2009. Emission of nitrous oxide from hydrocarbon contaminated soil amended with waste water sludge and earthworms. Appl. Soil Ecol. 41, 69-76.
10. Dice, L.R., 1945. Measures on the amount of ecologic association between species. Ecology 26, 297-302.
11. Di Gennaro, P., Moreno, B., Annoni, E., Garcia_rodriguez, S., Bestetti, G., Benitez, E., 2009. Dynamic changes in bacterial community structure and in naphthalene dioxygenase expression in vermicompost-amended PAH-contaminated soils. J. Hazard Mater. 172, 1464-1469.
12. Gallego, J.L.R., Loredo, J., Llamas, J.F., Vazquez, F., Sanchez, J., 2001. Bioremediation of diesel-contaminated soils: evaluation of potential in situ techniques by study of bacterial degradation. Biodegradation 12, 325-335.
13. García, C., Hernández, T., Costa, C., 1994. Biochemical parameters in soils generated by the addition of organic wastes. Waste Manage. Res. 12, 457-466.
14. Gelsomino, A., Keijzer-Wolters, C., Cacco, G., van Elsas, J.D., 1999. Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J. Microbiol. Methods 38, 1-15.
15. Green, S.J., Michel Jr., F.C., Hadar, Y., Minz, D., 2004. Similarity of bacterial communities in sawdust-and straw-amended cow manure composts. FEMS Microbiol. Lett. 233, 115-123.
16. Handi, H., Manusadžianas, L., Aoyama, I., Jedidi, N., 2006. Effects of anthracene, pyrene and benzo(a)pyrene spiking and sewage sludge compost amendment on soil ecotoxicity during a bioremediation process. Chemosphere 65, 1153-1162.
17. Handi, H., Benzarti, S., Manusadžianas, L., Aoyama, I., Jedidi, N., 2007. Bioaugmentation and biostimulation effects on PAH dissipation and soil ecotoxicity under controlled conditions. Soil Biol. Biochem. 39, 1926-1935.
18. Harmsen, J., 1991. Possibilities and limitations of landfarming for cleaning contaminated soils. In: Olfenbuttel, R.F.H. (Ed.), On Site Bioremediation Process for Xenobiotic and Hydrocarbons Treatment. Butterwort-Hetmann, Stoneham, MA, pp. 255-272.
19. Innerebner, G., Knapp, B., Vasara, T., Romantschuck, M., Insam, H., 2005. Traceability of ammonia-oxidizing bacteria in compost treated soils. Soil Biol. Biochem. 38, 1092-1100.
20. Iwamoto, T., Nasu, M., 2001. Current bioremediation practice and perspective. J. Biosci. Bioeng. 92, 1-8.
21. Johnsen, A.R., Wick, L.Y., Harms, H., 2005. Principles of microbial PAH-degradation in soil. Environ. Pollut. 133, 71-84.
22. Jorgensen, K.S., Puustinen, J., Suortti, A.M., 2000. Bioremediation of petroleum hydrocarbon contaminated soil by composting in biopiles. Environ. Pollut. 107, 245-254.
23. Kaplan, C., Kitts, C.L., 2004. Bacterial succession in a petroleum land treatment unit. Appl. Environ. Microbiol. 70, 1777-1786.
24. Katsivela, E., Moore, E.R.B., Maroukli, D., Strómpl, C., Pieper, D., Kalogerakis, N., 2005. Bacterial community dynamics during in situ bioremediation of petroleum waste sludge in landfarming sites. Biodegradation 16, 169-180.
25. Kloos, K., Munch, J.C., Schloter, M., 2006. A new method for the detection of alkane-monooxygenase homologous genes (alkb) in soils based on PCR-hybridization. J. Microbiol. Methods 66, 486-496.
26. Leahy, J.G., Colwell, R.R., 1990. Microbial degradation of hydrocarbons in the environment. Microbiol. Rev. 54, 305-315.
27. Lee, S., Oh, B., Kim, J., 2008. Effect of various amendments on heavy mineral oil bioremediation and soil microbial activity. Bioresour. Technol. 99, 2578-2587.
28. Liew, P.W.Y., Jong, B.C., 2008. Application of rDNA-PCR amplification and DGGE fingerprinting for detection of microbial diversity in Malaysian crude oil. J. Microbiol. Biotechnol. 18, 815-820.
29. Maila, M.P., Cloete, T.E., 2004. Bioremediation of petroleum hydrocarbons through landfarming: are simplicity and cost-effectiveness the only advantages? Rev. Environ. Sci. Biotechnol. 3, 349-360.
30. Margesin, R., Zimmerbauer, A., Schinner, F., 2000. Monitoring of bioremediation by biological activities. Chemosphere 40, 339-346.
31. Margesin, R., Labbe, D., Schinner, F., Greer, C.W., Whyte, L.G., 2003. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils. Appl. Environ. Microbiol. 69, 3085-3092.
32. Marin, J.A., Hernandez, T., Garcia, C., 2005. Bioremediation of oil refinery sludge by land farming in semi-arid conditions: influence on soil microbial activity. Environ. Res. 98, 185-195.
33. Murphy, J., Riley, J.P., 1962. A modified single solution method for the determination of phosphate in natural waters. Anal. Chim. Acta 27, 31-36.
34. Muyzer, G., De Waal, E.D., Uitterlinden, A.G., 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695-700.
35. Palmroth, M.R.T., Pichtel, J., Puhakka, J.A., 2002. Phytoremediation of subartic soil contaminated with diesel fuel. Bioresour. Technol. 84, 221-228.
36. Rhykerd, R.L., Weaver, R.W., McInnes, K.J., 1995. Influence of salinity on bioremediation of oil in soil. Environ. Pollut. 90, 127-130.
37. Rhykerd, R.L., Crews, B., McInnes, K.J., Weaver, R.W., 1999. Impact of bulking agents, forced aeration, and tillage on remediation of oil contaminated soil. Bioresour. Technol. 67, 279-285.
38. Ros, M., Pascual, J.A., García, C., Hernández, M.T., Insam, H., 2006. Hydrolase activities, microbial biomass and bacterial community in a soil after long-term amendment with different composts. Soil Biol. Biochem. 38, 3443-3452.
39. Roy, S., Labelle, S., Mehta, P., Mihoc, A., Fortin, N., Masson, C., Leblanc, R., Châteauneuf, G., Sura, C., Gallipeau, C., Olsen, C., Delisle, S., Labrecque, M., Greer, C.W., 2005. Phytoremediation of heavy metal and PAH-contaminated brownfield sites. Plant Soil 272, 277-290.
40. Sabaté, J., Viñas, M., Solanas, A.M., 2004. Laboratory-scale bioremediation experiment on hydrocarbon-contaminated soils. Int. Biodeter. Biodegr. 54, 19-25.
41. Saison, C., Degrange, V., Oliver, R., Millard, P., Commeaux, C., Montange, D., Le Roux, X., 2006. Alteration and resilience of the soil microbial community following compost amendment: effects of compost level and compost-borne microbial community. Environ. Microbiol. 8, 247-257.
42. Samanta, S.K., Singh, O.V., Jain, R.K., 2002. Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation. Trends Biotechnol. 20, 243-248.
43. Schaefer, M., Juliane, F., 2007. The influence of earthworms and organic additives on the biodegradation of oil contaminated soil. Appl. Soil Ecol. 36, 53-62.
44. Swindoll, C.M., Aelion, C.M., Pfaender, K.F., 1998. Influence of inorganic and organic nutrients on aerobic biodegradation and on the adaptation responses of subsurface microbial communities. Appl. Environ. Microbiol. 54, 212-217.
45. Tyson, G.W., Banfield, J.F., 2005. Cultivating the uncultivated: a community genomics perspective. Trends Microbiol. 13, 411-415.
46. Vainio, E.J., Hantula, J., 2000. Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA. Mycol. Res. 104, 927-936.
47. Van der Waarde, J.J., Dijkhuis, E.D., Henssen, M.J.C., Keuning, S., 1995. Enzyme assays as indicators for bioremediation. In: Hinchee, R.E., Douglas, G.S., Ong, S.K. (Eds.), Monitoring and Verification of Bioremediation. Battlelle Press, pp. 59-63.
48. Viñas, M., Sabáte, J., Solanas, A.M., 2005. Culture-dependent and independent approaches establish the complexity of a PAH-degrading microbial consortium. Can. J. Microbiol. 51, 897-909.
49. Ward, J.H., 1963. Hierarchical grouping to optimize an objective function. J. Am. Stat. Assoc. 58, 236-244.
50. Wellman, D.E., Ulery, A.L., Barcellona, M.P., Duerr-Auster, S., 2001. Animal waste-enhanced degradation of hydrocarbon-contaminated soil. Soil Sediment Contam. 10, 511-523.
51. Whyte, L.G., Greer, C.W., 2005. Molecular techniques for monitoring and assessing soil bioremediation. In: Margesin, R., Schinner, F. (Eds.), Manual for Soil Analysis - Monitoring and Assessing Soil Bioremediation, Soil Biology, vol. 5. Springer-Verlag, Berlin, pp. 201-231.
52. Wu, Y., Luo, Y., Ni, J., Liu, W., Teng, Y., Li, Z., 2008. Bioremediation of polycyclic aromatic hydrocarbons contaminated soil with Monilina sp.: degradation and microbial community analysis. Biodegradation 19, 247-257.
53. Yeomans, J., Bremner, J.M., 1989. A rapid and precise method for routine determination of organic carbon in soil. Commun. Soil Sci. Plan. 19, 1467-1476.
54. Yu, Z., Morrison, M., 2004. Comparisons of different hypervariable regions of RRS genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 70, 4800-4806.