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Volumn , Issue , 2010, Pages 123-132

SNP Genotyping Platforms

Author keywords

Affymetrix, and smaller (5 25 K), targeted SNP kits molecular inversion probe technology for SNP calling; Affymetrix, best known for its development of high density microarrays for mammalian and model species; GoldenGate Assay, by Wang et al. (2008) to genotype 192 catfish for 384 SNPs; Illumina, two viable options for aquaculture researchers interested in SNP genotyping; Next generation sequencing technologies rapid progression of whole genome sequencing, in multiple aquaculture species, increasing sequence data availability; Single nucleotide polymorphisms (SNPs) abundant molecular marker sources, multiplexed and automatically scored; SNP genotyping platform technologies appropriateness for meeting varied needs of aquaculture genomics community; SNP genotyping platforms; SNP genotyping platforms chemistries and detection methods; SNP genotyping platforms throughput and multiplexing

Indexed keywords


EID: 84886124474     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470958964.ch8     Document Type: Chapter
Times cited : (4)

References (14)
  • 1
    • 52549118411 scopus 로고    scopus 로고
    • Conservation genomics of Atlantic salmon: SNPs associated with QTLs for adaptive traits in parr from four trans -Atlantic backcrosses
    • Boulding EG, Culling M, Glebe B, Berg PR, Lien S, and Moen T. 2008. Conservation genomics of Atlantic salmon: SNPs associated with QTLs for adaptive traits in parr from four trans -Atlantic backcrosses. Heredity, 101: 101-381.
    • (2008) Heredity , vol.101 , pp. 101-381
    • Boulding, E.G.1    Culling, M.2    Glebe, B.3    Berg, P.R.4    Lien, S.5    Moen, T.6
  • 2
    • 77952057524 scopus 로고    scopus 로고
    • A gene- based SNP linkage map for Pacific white shrimp, Litopenaeus vannamei
    • Du ZQ, Ciobanu DC, Onteru SK, et al. 2010. A gene- based SNP linkage map for Pacific white shrimp, Litopenaeus vannamei. Anim Genet, 41: 41-286.
    • (2010) Anim Genet , vol.41 , pp. 41-286
    • Du, Z.Q.1    Ciobanu, D.C.2    Onteru, S.K.3
  • 4
    • 0024514081 scopus 로고
    • A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene
    • Litt M and Luty JA. 1989. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet, 44: 44-397.
    • (1989) Am J Hum Genet , vol.44 , pp. 44-397
    • Litt, M.1    Luty, J.A.2
  • 5
    • 4344702182 scopus 로고    scopus 로고
    • DNA marker technologies and their applications in aquaculture genetics
    • Liu ZJ and Cordes JF. 2004. DNA marker technologies and their applications in aquaculture genetics. Aquaculture, 238: 238-1.
    • (2004) Aquaculture , vol.238 , pp. 238-231
    • Liu, Z.J.1    Cordes, J.F.2
  • 6
    • 73849088359 scopus 로고    scopus 로고
    • BAC-based upgrading and physical integration of a genetic SNP map in Atlantic salmon
    • Lorenz S, Brenna-Hansen S, Moen T, et al. 2010. BAC-based upgrading and physical integration of a genetic SNP map in Atlantic salmon. Anim Genet, 41: 41-48.
    • (2010) Anim Genet , vol.41 , pp. 41-48
    • Lorenz, S.1    Brenna-hansen, S.2    Moen, T.3
  • 7
    • 44449161026 scopus 로고    scopus 로고
    • A linkage map of the Atlantic salmon ( Salmo salar ) based on EST-derived SNP markers
    • Moen T, Hayes B, Baranski M, et al. 2008. A linkage map of the Atlantic salmon ( Salmo salar ) based on EST-derived SNP markers. BMC Genomics, 9: 223.
    • (2008) BMC Genomics , vol.9 , pp. 223
    • Moen, T.1    Hayes, B.2    Baranski, M.3
  • 9
    • 58849144734 scopus 로고    scopus 로고
    • DNA variations in human and medical genetics: 25 years of my experience
    • Nakamura Y. 2009. DNA variations in human and medical genetics: 25 years of my experience. J Hum Genet, 54: 54-1.
    • (2009) J Hum Genet , vol.54 , pp. 54-51
    • Nakamura, Y.1
  • 10
    • 84886194028 scopus 로고    scopus 로고
    • High throughput genotyping in salmon and steelhead (Abstract)
    • Plant and Animal Genomics Conference, San Diego, CA
    • Narum S, Campbell N, and Yi Y. 2009. High throughput genotyping in salmon and steelhead (Abstract). Plant and Animal Genomics Conference, San Diego, CA.
    • (2009)
    • Narum, S.1    Campbell, N.2    Yi, Y.3
  • 11
    • 71949101266 scopus 로고    scopus 로고
    • Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library
    • Sánchez CC, Smith TP, Wiedmann RT, et al. 2009. Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library. BMC Genomics, 10: 559.
    • (2009) BMC Genomics , vol.10 , pp. 559
    • Sánchez, C.C.1    Smith, T.P.2    Wiedmann, R.T.3
  • 12
    • 77952480892 scopus 로고    scopus 로고
    • Comparative genetic analysis of inflammatory bowel disease and type 1 diabetes implicates multiple loci with opposite effects
    • Wang K, Baldassano R, Zhang H, et al. 2010a. Comparative genetic analysis of inflammatory bowel disease and type 1 diabetes implicates multiple loci with opposite effects. Hum Mol Genet, 19: 2059-2067.
    • (2010) Hum Mol Genet , vol.19 , pp. 2059-2067
    • Wang, K.1    Baldassano, R.2    Zhang, H.3
  • 13
    • 54349120289 scopus 로고    scopus 로고
    • Quality assessment parameters for EST-derived SNPs from catfish
    • Wang S, Sha Z, Sonstegard TS, et al. 2008. Quality assessment parameters for EST-derived SNPs from catfish. BMC Genomics, 9: 450.
    • (2008) BMC Genomics , vol.9 , pp. 450
    • Wang, S.1    Sha, Z.2    Sonstegard, T.S.3
  • 14
    • 77349083472 scopus 로고    scopus 로고
    • Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
    • Wang S, Peatman E, Abernathy J, et al. 2010b. Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biol, 11: R8.
    • (2010) Genome Biol , vol.11
    • Wang, S.1    Peatman, E.2    Abernathy, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.