-
1
-
-
84859246989
-
Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays
-
Aghaeepour N., Chattopadhyay P.K., Ganesan A., O'Neill K., Zare H., Jalali A., Hoos H.H., Roederer M., Brinkman R.R. Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays. Bioinformatics 2012, 28:1009.
-
(2012)
Bioinformatics
, vol.28
, pp. 1009
-
-
Aghaeepour, N.1
Chattopadhyay, P.K.2
Ganesan, A.3
O'Neill, K.4
Zare, H.5
Jalali, A.6
Hoos, H.H.7
Roederer, M.8
Brinkman, R.R.9
-
2
-
-
0036109159
-
Memory CD8+ T cells vary in differentiation phenotype in different persistent virus infections
-
Appay V., Dunbar P.R., Callan M., Klenerman P., Gillespie G.M., Papagno L., Ogg G.S., King A., Lechner F., Spina C.A., Little S., Havlir D.V., Richman D.D., Gruener N., Pape G., Waters A., Easterbrook P., Salio M., Cerundolo V., McMichael A.J., Rowland-Jones S.L. Memory CD8+ T cells vary in differentiation phenotype in different persistent virus infections. Nat. Med. 2002, 8:379.
-
(2002)
Nat. Med.
, vol.8
, pp. 379
-
-
Appay, V.1
Dunbar, P.R.2
Callan, M.3
Klenerman, P.4
Gillespie, G.M.5
Papagno, L.6
Ogg, G.S.7
King, A.8
Lechner, F.9
Spina, C.A.10
Little, S.11
Havlir, D.V.12
Richman, D.D.13
Gruener, N.14
Pape, G.15
Waters, A.16
Easterbrook, P.17
Salio, M.18
Cerundolo, V.19
McMichael, A.J.20
Rowland-Jones, S.L.21
more..
-
3
-
-
55949116720
-
Phenotype and function of human T lymphocyte subsets: consensus and issues
-
Appay V., van Lier R.A., Sallusto F., Roederer M. Phenotype and function of human T lymphocyte subsets: consensus and issues. Cytometry A 2008, 73:975.
-
(2008)
Cytometry A
, vol.73
, pp. 975
-
-
Appay, V.1
van Lier, R.A.2
Sallusto, F.3
Roederer, M.4
-
4
-
-
77951692771
-
Plasticity in programming of effector and memory CD8 T-cell formation
-
Arens R., Schoenberger S.P. Plasticity in programming of effector and memory CD8 T-cell formation. Immunol. Rev. 2010, 235:190.
-
(2010)
Immunol. Rev.
, vol.235
, pp. 190
-
-
Arens, R.1
Schoenberger, S.P.2
-
5
-
-
25444461647
-
Functional properties and lineage relationship of CD8+ T cell subsets identified by expression of IL-7 receptor alpha and CD62L
-
Bachmann M.F., Wolint P., Schwarz K., Jager P., Oxenius A. Functional properties and lineage relationship of CD8+ T cell subsets identified by expression of IL-7 receptor alpha and CD62L. J. Immunol. 2005, 175:4686.
-
(2005)
J. Immunol.
, vol.175
, pp. 4686
-
-
Bachmann, M.F.1
Wolint, P.2
Schwarz, K.3
Jager, P.4
Oxenius, A.5
-
6
-
-
84885829615
-
-
7,653,509 Verity Software House, USA, USPTO (Ed.)
-
Bagwell C.B. Probability state models 2007, vol. 7,653,509. Verity Software House, USA. USPTO (Ed.).
-
(2007)
Probability state models
-
-
Bagwell, C.B.1
-
7
-
-
84886021429
-
Probability state modeling: a new paradigm for cytometric analysis
-
John Wiley & Sons, Inc., Hoboken, NJ, V. Litwin, P. Marder (Eds.)
-
Bagwell C.B. Probability state modeling: a new paradigm for cytometric analysis. Flow Cytometry in Drug Discovery and Development 2010, 281. John Wiley & Sons, Inc., Hoboken, NJ. V. Litwin, P. Marder (Eds.).
-
(2010)
Flow Cytometry in Drug Discovery and Development
, pp. 281
-
-
Bagwell, C.B.1
-
8
-
-
79956264476
-
Breaking the Dimensionality Barrier
-
Humana Press, New York City, T.S. Hawley, R.G. Hawley (Eds.)
-
Bagwell C.B. Breaking the Dimensionality Barrier. Flow Cytometry Protocols 2011, 31. Humana Press, New York City. T.S. Hawley, R.G. Hawley (Eds.).
-
(2011)
Flow Cytometry Protocols
, pp. 31
-
-
Bagwell, C.B.1
-
9
-
-
84885758380
-
A New Paradigm for Cytometric Analysis
-
Wiley-Blackwell Publishing Ltd. K. Kottke-Marchant, B.H. Davis (Eds.)
-
Bagwell C.B. A New Paradigm for Cytometric Analysis. Laboratory Hematology Practice 2012, Wiley-Blackwell Publishing Ltd. K. Kottke-Marchant, B.H. Davis (Eds.).
-
(2012)
Laboratory Hematology Practice
-
-
Bagwell, C.B.1
-
11
-
-
77954270805
-
A survey of flow cytometry data analysis methods
-
584603
-
Bashashati A., Brinkman R.R. A survey of flow cytometry data analysis methods. Adv. Bioinforma. 2009, 584603.
-
(2009)
Adv. Bioinforma.
-
-
Bashashati, A.1
Brinkman, R.R.2
-
12
-
-
33746788900
-
Quantum dot semiconductor nanocrystals for immunophenotyping by polychromatic flow cytometry
-
Chattopadhyay P.K., Price D.A., Harper T.F., Betts M.R., Yu J., Gostick E., Perfetto S.P., Goepfert P., Koup R.A., De Rosa S.C., Bruchez M.P., Roederer M. Quantum dot semiconductor nanocrystals for immunophenotyping by polychromatic flow cytometry. Nat. Med. 2006, 12:972.
-
(2006)
Nat. Med.
, vol.12
, pp. 972
-
-
Chattopadhyay, P.K.1
Price, D.A.2
Harper, T.F.3
Betts, M.R.4
Yu, J.5
Gostick, E.6
Perfetto, S.P.7
Goepfert, P.8
Koup, R.A.9
De Rosa, S.C.10
Bruchez, M.P.11
Roederer, M.12
-
13
-
-
84860321973
-
Cutting edge: asymmetric memory t cell division in response to rechallenge
-
Ciocca M.L., Barnett B.E., Burkhardt J.K., Chang J.T., Reiner S.L. Cutting edge: asymmetric memory t cell division in response to rechallenge. J. Immunol. 2012, 188:4145.
-
(2012)
J. Immunol.
, vol.188
, pp. 4145
-
-
Ciocca, M.L.1
Barnett, B.E.2
Burkhardt, J.K.3
Chang, J.T.4
Reiner, S.L.5
-
14
-
-
78149465908
-
Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping
-
Costa E.S., Pedreira C.E., Barrena S., Lecrevisse Q., Flores J., Quijano S., Almeida J., del Carmen Garcia-Macias M., Bottcher S., Van Dongen J.J., Orfao A. Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping. Leukemia 2010, 24:1927.
-
(2010)
Leukemia
, vol.24
, pp. 1927
-
-
Costa, E.S.1
Pedreira, C.E.2
Barrena, S.3
Lecrevisse, Q.4
Flores, J.5
Quijano, S.6
Almeida, J.7
del Carmen Garcia-Macias, M.8
Bottcher, S.9
Van Dongen, J.J.10
Orfao, A.11
-
15
-
-
0038375013
-
Proliferation and differentiation potential of human CD8+ memory T-cell subsets in response to antigen or homeostatic cytokines
-
Geginat J., Lanzavecchia A., Sallusto F. Proliferation and differentiation potential of human CD8+ memory T-cell subsets in response to antigen or homeostatic cytokines. Blood 2003, 101:4260.
-
(2003)
Blood
, vol.101
, pp. 4260
-
-
Geginat, J.1
Lanzavecchia, A.2
Sallusto, F.3
-
16
-
-
0030691757
-
Phenotypic and functional separation of memory and effector human CD8+ T cells
-
Hamann D., Baars P.A., Rep M.H., Hooibrink B., Kerkhof-Garde S.R., Klein M.R., van Lier R.A. Phenotypic and functional separation of memory and effector human CD8+ T cells. J. Exp. Med. 1997, 186:1407.
-
(1997)
J. Exp. Med.
, vol.186
, pp. 1407
-
-
Hamann, D.1
Baars, P.A.2
Rep, M.H.3
Hooibrink, B.4
Kerkhof-Garde, S.R.5
Klein, M.R.6
van Lier, R.A.7
-
17
-
-
84885953506
-
A novel modeling system for analysis of high dimensional data: Definition of T cell effector and memory subsets using GemStone software
-
Inokuma M., Trotter J., Maino V.C., Ghanekar S., Bagwell C.B. A novel modeling system for analysis of high dimensional data: Definition of T cell effector and memory subsets using GemStone software. XXV Congress of the International Society for Advancement of Cytometry, Seattle, Washington 2010.
-
(2010)
XXV Congress of the International Society for Advancement of Cytometry, Seattle, Washington
-
-
Inokuma, M.1
Trotter, J.2
Maino, V.C.3
Ghanekar, S.4
Bagwell, C.B.5
-
18
-
-
78650032431
-
Quality assurance of intracellular cytokine staining assays: analysis of multiple rounds of proficiency testing
-
Jaimes M.C., Maecker H.T., Yan M., Maino V.C., Hanley M.B., Greer A., Darden J.M., D'Souza M.P. Quality assurance of intracellular cytokine staining assays: analysis of multiple rounds of proficiency testing. J. Immunol. Methods 2011, 363:143.
-
(2011)
J. Immunol. Methods
, vol.363
, pp. 143
-
-
Jaimes, M.C.1
Maecker, H.T.2
Yan, M.3
Maino, V.C.4
Hanley, M.B.5
Greer, A.6
Darden, J.M.7
D'Souza, M.P.8
-
19
-
-
0347382593
-
Selective expression of the interleukin 7 receptor identifies effector CD8 T cells that give rise to long-lived memory cells
-
Kaech S.M., Tan J.T., Wherry E.J., Konieczny B.T., Surh C.D., Ahmed R. Selective expression of the interleukin 7 receptor identifies effector CD8 T cells that give rise to long-lived memory cells. Nat. Immunol. 2003, 4:1191.
-
(2003)
Nat. Immunol.
, vol.4
, pp. 1191
-
-
Kaech, S.M.1
Tan, J.T.2
Wherry, E.J.3
Konieczny, B.T.4
Surh, C.D.5
Ahmed, R.6
-
20
-
-
84855338089
-
Seasonal variation in vitamin D(3) levels is paralleled by changes in the peripheral blood human T cell compartment
-
Khoo A.L., Koenen H.J., Chai L.Y., Sweep F.C., Netea M.G., van der Ven A.J., Joosten I. Seasonal variation in vitamin D(3) levels is paralleled by changes in the peripheral blood human T cell compartment. PLoS One 2012, 7:e29250.
-
(2012)
PLoS One
, vol.7
-
-
Khoo, A.L.1
Koenen, H.J.2
Chai, L.Y.3
Sweep, F.C.4
Netea, M.G.5
van der Ven, A.J.6
Joosten, I.7
-
21
-
-
49749119446
-
Multiparameter flow cytometric analysis of CD4 and CD8 T cell subsets in young and old people
-
Koch S., Larbi A., Derhovanessian E., Ozcelik D., Naumova E., Pawelec G. Multiparameter flow cytometric analysis of CD4 and CD8 T cell subsets in young and old people. Immun. Ageing 2008, 5:6.
-
(2008)
Immun. Ageing
, vol.5
, pp. 6
-
-
Koch, S.1
Larbi, A.2
Derhovanessian, E.3
Ozcelik, D.4
Naumova, E.5
Pawelec, G.6
-
22
-
-
77951670712
-
Once a killer, always a killer: from cytotoxic T cell to memory cell
-
Lefrancois L., Obar J.J. Once a killer, always a killer: from cytotoxic T cell to memory cell. Immunol. Rev. 2010, 235:206.
-
(2010)
Immunol. Rev.
, vol.235
, pp. 206
-
-
Lefrancois, L.1
Obar, J.J.2
-
23
-
-
0002470249
-
Normal antigen expression in hematopoiesis: basis for interpreting leukemia phenotypes
-
Wile-Liss, New York, NY, C.C. Stewart, J.K.A. Nicholson (Eds.)
-
Loken M.R., Wells D.A. Normal antigen expression in hematopoiesis: basis for interpreting leukemia phenotypes. Immunophenotyping 2000, 133. Wile-Liss, New York, NY. C.C. Stewart, J.K.A. Nicholson (Eds.).
-
(2000)
Immunophenotyping
, pp. 133
-
-
Loken, M.R.1
Wells, D.A.2
-
24
-
-
77954250303
-
Data analysis in flow cytometry: the future just started
-
Lugli E., Roederer M., Cossarizza A. Data analysis in flow cytometry: the future just started. Cytometry A 2010, 77:705.
-
(2010)
Cytometry A
, vol.77
, pp. 705
-
-
Lugli, E.1
Roederer, M.2
Cossarizza, A.3
-
25
-
-
26444448037
-
Standardization of cytokine flow cytometry assays
-
Maecker H.T., Rinfret A., D'Souza P., Darden J., Roig E., Landry C., Hayes P., Birungi J., Anzala O., Garcia M., Harari A., Frank I., Baydo R., Baker M., Holbrook J., Ottinger J., Lamoreaux L., Epling C.L., Sinclair E., Suni M.A., Punt K., Calarota S., El-Bahi S., Alter G., Maila H., Kuta E., Cox J., Gray C., Altfeld M., Nougarede N., Boyer J., Tussey L., Tobery T., Bredt B., Roederer M., Koup R., Maino V.C., Weinhold K., Pantaleo G., Gilmour J., Horton H., Sekaly R.P. Standardization of cytokine flow cytometry assays. BMC Immunol. 2005, 6:13.
-
(2005)
BMC Immunol.
, vol.6
, pp. 13
-
-
Maecker, H.T.1
Rinfret, A.2
D'Souza, P.3
Darden, J.4
Roig, E.5
Landry, C.6
Hayes, P.7
Birungi, J.8
Anzala, O.9
Garcia, M.10
Harari, A.11
Frank, I.12
Baydo, R.13
Baker, M.14
Holbrook, J.15
Ottinger, J.16
Lamoreaux, L.17
Epling, C.L.18
Sinclair, E.19
Suni, M.A.20
Punt, K.21
Calarota, S.22
El-Bahi, S.23
Alter, G.24
Maila, H.25
Kuta, E.26
Cox, J.27
Gray, C.28
Altfeld, M.29
Nougarede, N.30
Boyer, J.31
Tussey, L.32
Tobery, T.33
Bredt, B.34
Roederer, M.35
Koup, R.36
Maino, V.C.37
Weinhold, K.38
Pantaleo, G.39
Gilmour, J.40
Horton, H.41
Sekaly, R.P.42
more..
-
26
-
-
84857647499
-
Standardizing immunophenotyping for the Human Immunology Project
-
Maecker H.T., McCoy J.P., Nussenblatt R. Standardizing immunophenotyping for the Human Immunology Project. Nat. Rev. Immunol. 2012, 12:191.
-
(2012)
Nat. Rev. Immunol.
, vol.12
, pp. 191
-
-
Maecker, H.T.1
McCoy, J.P.2
Nussenblatt, R.3
-
28
-
-
80054768631
-
Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE
-
Qiu P., Simonds E.F., Bendall S.C., Gibbs K.D., Bruggner R.V., Linderman M.D., Sachs K., Nolan G.P., Plevritis S.K. Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE. Nat. Biotechnol. 2011, 29:886.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 886
-
-
Qiu, P.1
Simonds, E.F.2
Bendall, S.C.3
Gibbs, K.D.4
Bruggner, R.V.5
Linderman, M.D.6
Sachs, K.7
Nolan, G.P.8
Plevritis, S.K.9
-
29
-
-
77950970624
-
Characterization of patient specific signaling via augmentation of Bayesian networks with disease and patient state nodes
-
Sachs K., Gentles A.J., Youland R., Itani S., Irish J., Nolan G.P., Plevritis S.K. Characterization of patient specific signaling via augmentation of Bayesian networks with disease and patient state nodes. Conference proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2009 2009, 6624.
-
(2009)
Conference proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2009
, pp. 6624
-
-
Sachs, K.1
Gentles, A.J.2
Youland, R.3
Itani, S.4
Irish, J.5
Nolan, G.P.6
Plevritis, S.K.7
-
30
-
-
0033554726
-
Two subsets of memory T lymphocytes with distinct homing potentials and effector functions
-
Sallusto F., Lenig D., Forster R., Lipp M., Lanzavecchia A. Two subsets of memory T lymphocytes with distinct homing potentials and effector functions. Nature 1999, 401:708.
-
(1999)
Nature
, vol.401
, pp. 708
-
-
Sallusto, F.1
Lenig, D.2
Forster, R.3
Lipp, M.4
Lanzavecchia, A.5
-
31
-
-
40949142383
-
Origin of CD8+ effector and memory T cell subsets
-
Stemberger C., Neuenhahn M., Buchholz V.R., Busch D.H. Origin of CD8+ effector and memory T cell subsets. Cell. Mol. Immunol. 2007, 4:399.
-
(2007)
Cell. Mol. Immunol.
, vol.4
, pp. 399
-
-
Stemberger, C.1
Neuenhahn, M.2
Buchholz, V.R.3
Busch, D.H.4
-
32
-
-
62049085970
-
Stem cell-like plasticity of naive and distinct memory CD8+ T cell subsets
-
Stemberger C., Neuenhahn M., Gebhardt F.E., Schiemann M., Buchholz V.R., Busch D.H. Stem cell-like plasticity of naive and distinct memory CD8+ T cell subsets. Semin. Immunol. 2009, 21:62.
-
(2009)
Semin. Immunol.
, vol.21
, pp. 62
-
-
Stemberger, C.1
Neuenhahn, M.2
Gebhardt, F.E.3
Schiemann, M.4
Buchholz, V.R.5
Busch, D.H.6
-
33
-
-
0028085755
-
Down-regulation of l-selectin surface expression by various leukocyte isolation procedures
-
Stibenz D., Buhrer C. Down-regulation of l-selectin surface expression by various leukocyte isolation procedures. Scand. J. Immunol. 1994, 39:59.
-
(1994)
Scand. J. Immunol.
, vol.39
, pp. 59
-
-
Stibenz, D.1
Buhrer, C.2
-
34
-
-
0036604205
-
Differentiation of human CD8(+) T cells from a memory to memory/effector phenotype
-
Tomiyama H., Matsuda T., Takiguchi M. Differentiation of human CD8(+) T cells from a memory to memory/effector phenotype. J. Immunol. 2002, 168:5538.
-
(2002)
J. Immunol.
, vol.168
, pp. 5538
-
-
Tomiyama, H.1
Matsuda, T.2
Takiguchi, M.3
-
35
-
-
3843095149
-
Phenotypic classification of human CD8+ T cells reflecting their function: inverse correlation between quantitative expression of CD27 and cytotoxic effector function
-
Tomiyama H., Takata H., Matsuda T., Takiguchi M. Phenotypic classification of human CD8+ T cells reflecting their function: inverse correlation between quantitative expression of CD27 and cytotoxic effector function. Eur. J. Immunol. 2004, 34:999.
-
(2004)
Eur. J. Immunol.
, vol.34
, pp. 999
-
-
Tomiyama, H.1
Takata, H.2
Matsuda, T.3
Takiguchi, M.4
-
36
-
-
0025940347
-
Month-related variability in immunological test results; implications for immunological follow-up studies
-
van Rood Y., Goulmy E., Blokland E., Pool J., van Rood J., van Houwelingen H. Month-related variability in immunological test results; implications for immunological follow-up studies. Clin. Exp. Immunol. 1991, 86:349.
-
(1991)
Clin. Exp. Immunol.
, vol.86
, pp. 349
-
-
van Rood, Y.1
Goulmy, E.2
Blokland, E.3
Pool, J.4
van Rood, J.5
van Houwelingen, H.6
-
37
-
-
65349127714
-
Virus-specific CD8 T cells: activation, differentiation and memory formation
-
Wiesel M., Walton S., Richter K., Oxenius A. Virus-specific CD8 T cells: activation, differentiation and memory formation. APMIS 2009, 117:356.
-
(2009)
APMIS
, vol.117
, pp. 356
-
-
Wiesel, M.1
Walton, S.2
Richter, K.3
Oxenius, A.4
-
38
-
-
79960884563
-
The shedding of CD62L (l-selectin) regulates the acquisition of lytic activity in human tumor reactive T lymphocytes
-
Yang S., Liu F., Wang Q.J., Rosenberg S.A., Morgan R.A. The shedding of CD62L (l-selectin) regulates the acquisition of lytic activity in human tumor reactive T lymphocytes. PLoS One 2011, 6:e22560.
-
(2011)
PLoS One
, vol.6
-
-
Yang, S.1
Liu, F.2
Wang, Q.J.3
Rosenberg, S.A.4
Morgan, R.A.5
-
39
-
-
77954938186
-
Data reduction for spectral clustering to analyze high throughput flow cytometry data
-
Zare H., Shooshtari P., Gupta A., Brinkman R.R. Data reduction for spectral clustering to analyze high throughput flow cytometry data. BMC Bioinf. 2010, 11:403.
-
(2010)
BMC Bioinf.
, vol.11
, pp. 403
-
-
Zare, H.1
Shooshtari, P.2
Gupta, A.3
Brinkman, R.R.4
|