Genetic diversity of legume yellow mosaic begomoviruses in Indonesia and Vietnam

Annals of Applied Biology

Volumn 163, Issue 3, 2013, Pages 367-377

  Tsai, W S ^a   Shih, S L ^a   Rauf, A ^b   Safitri, R ^c   Hidayati, N ^c   Huyen, B T T ^d   Kenyon, L ^a  

^a AVRDC THE WORLD VEGETABLE CENTER   (Taiwan)

^b BOGOR AGRICULTURAL UNIVERSITY   (Indonesia)

^c PT East West Seed Indonesia ^*  (Indonesia)

^d Plant Resources Centre   (Viet Nam)

Author keywords

Geminiviridae; Glycine max; phylogenetic analysis; polymerase chain reaction; Vigna radiata; Vigna unguiculata subsp. sesquipedalis

Indexed keywords

EMERGENCE; GENETIC VARIATION; LEGUME; PATHOGEN; PHYLOGENETICS; POLYMERASE CHAIN REACTION; SOYBEAN; VIRUS;

GREATER SUNDA ISLANDS; INDONESIA; JAVA; SUNDA ISLES; VIET NAM;

BEGOMOVIRUS; GEMINIVIRIDAE; GLYCINE MAX; MUNGBEAN YELLOW MOSAIC INDIA VIRUS; MUNGBEAN YELLOW MOSAIC VIRUS; VIGNA RADIATA; VIGNA RADIATA VAR. RADIATA; VIGNA UNGUICULATA SUBSP. SESQUIPEDALIS;

EID: 84885951292     PISSN: 00034746     EISSN: 17447348     Source Type: Journal    
DOI: 10.1111/aab.12063     Document Type: Article

References (67)

1. Alabi O.J., Ogbe F.O., Bandyopadhyay R., Kumar P.L., Dixon A.G.O., Hughes J.d'A., Naidu R.A., (2008) Alternate hosts of African cassava mosaic virus and East African cassava mosaic Cameroon virus in Nigeria. Archives of Virology, 153, 1743-1747.
2. Alabi O., Lava Kumar P., Mgbechi-Ezeri J., Naidu R., (2010) Two new 'legumoviruses' (genus Begomovirus) naturally infecting soybean in Nigeria. Archives of Virology, 155, 643-656.
3. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J., (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
4. Barnabas A., Radhakrishnan G., Ramakrishnan U., (2010) Characterization of a begomovirus causing horsegram yellow mosaic disease in India. European Journal of Plant Pathology, 127, 41-51.
5. Bashir M., Iqbal M.S., Ghafoor A., Ahmad Z., Qureshi A.S., (2002) Variability in cowpea germplasm for reaction to virus infection under field conditions. Pakistan Journal of Botany, 34, 47-48.
6. Bhattacharyya P.K., HariHar Ram, Kole P.C., (1999) Inheritance of resistance to yellow mosaic virus in interspecific crosses of soybean. Euphytica, 108, 157-159.
7. Blair M.W., Bassett M.J., Abouzid A.M., Hiebert E., Polston J.E., McMillan R.T., Graves W., Lamberts M., (1995) Occurrence of bean golden mosaic virus in Florida. Plant Disease, 79, 529-533.
8. Briddon R.W., Bull S.E., Mansoor S., Amin I., Markham P.G., (2002) Universal primers for the PCR-mediated amplification of DNA beta: a molecule associated with some monopartite begomoviruses. Molecular Biotechnolology, 20, 315-318.
9. Brown J.K., Ostrow K.M., Idris A.M., Stenger D.C., (1999) Biotic, molecular, and phylogenetic characterization of bean calico mosaic virus, a distinct Begomovirus species with affiliation in the squash leaf curl virus cluster. Phytopathology, 89, 273-280.
10. Capoor S.P., Varma P.M., (1948) Yellow mosaic of Phaseolus lunatus. Current Science, 17, 152-153.
11. Chiemsombat P., (1992) Mungbean yellow mosaic disease in Thailand: a review. In Mungbean Yellow Mosaic Disease: Proceedings of An International Workshop, pp. 54-58. Eds, S.K. Green, and, D.-H. Kim,. Tainan, Taiwan: AVRDC-The World Vegetable Center.
12. Clark M.F., Adams A.N., (1977) Characteristics of the microplate method of enzyme-linked immunosorbent assay (ELISA) for the detection of plant viruses. Journal of General Virology, 34, 475-483.
13. Dai F.M., Zeng R., Chen W.J., Lu J.P., (2011) First report of Tomato yellow leaf curl virus infecting cowpea in China. Plant Disease, 95, 362.
14. Damayanti T.A., Alabi O.J., Rauf A., Naidu R.A., (2010) The occurrence of Bean common mosaic virus and Cucumber mosaic virus in yard-long beans in Indonesia. Plant Disease, 94, 478.
15. De Barro P.J., Hidayat S.H., Frohlich D., Subandiyah S., Ueda S., (2008) A virus and its vector, pepper yellow leaf curl virus and Bemisia tabaci, two new invaders of Indonesia. Biological Invasions, 10, 411-433.
16. Dong J.H., Luo Y.Q., Ding M., Zhang Z.K., Yang C.K., (2007) First report of Tomato yellow leaf curl China virus infecting kidney bean in China. Plant Pathology, 56, 342.
17. Duffy S., Holmes E.C., (2008) Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus. Journal of Virology, 82, 957-965.
18. Durham T.C., Baker C., Jones L., Snyder L.U., (2010) First report of Sida golden mosaic virus infecting snap bean (Phaseolus vulgaris) in Florida. Plant Disease, 94, 487.
19. Fauquet C.M., Briddon R.W., Brown J.K., Moriones E., Stanley J., Zerbini M., Zhou X., (2008) Geminivirus strain demarcation and nomenclature. Archives of Virology, 153, 783-821.
20. Fernandes F., Cruz A.R.R., Faria J.C., Zerbini F.M., Aragão F.L., (2009) Three distinct begomoviruses associated with soybean in central Brazil. Archives of Virology, 154, 1567-1570.
21. Gharsallah Chouchane S., Gorsane F., Nakhla M.K., Maxwell D.P., Marrakchi M., Fakhfakh H., (2007) First report of Tomato yellow leaf curl virus-Israel species infecting tomato, pepper and bean in Tunisia. Journal of Phytopathology, 155, 236-240.
22. Gilbertson R.L., Rojas M.R., Russell D.R., Maxwell D.P., (1991) Use of the asymmetric polymerase chain reaction and DNA sequencing to determine genetic variability of bean golden mosaic geminivirus in the Dominican Republic. Journal of General Virology, 72, 2843-2848.
23. Gilbertson R.L., Faria J.C., Ahlquist P., Maxwell D.P., (1993) Genetic diversity in geminiviruses causing bean golden mosaic disease: the nucleotide sequence of the infectious cloned DNA components of a Brazilian isolate of Bean golden mosaic geminivirus. Phytopathology, 83, 709-715.
24. Girish K.R., Usha R., (2005) Molecular characterization of two soybean-infecting begomoviruses from India and evidence for recombination among legume-infecting begomoviruses from South-East Asia. Virus Research, 108, 167-176.
25. Green S.K., Lee D.R., Horne N.M., (1988) Survey for viruses of soybean, mungbean, and peanut in Java, Indonesia. Plant Disease, 72, 994.
26. Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J., (2008a) Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation. Journal of General Virology, 89, 312-326.
27. Ha C., Revill P., Harding R.M., Vu M., Dale J.L., (2008b) Identification and sequence analysis of potyviruses infecting crops in Vietnam. Archives of Virology, 153, 45-60.
28. Habib S., Shad N., Javaid A., Iqbal U., (2007) Screening of mungbean germplasm for resistance/tolerance against yellow mosaic disease. Mycopath, 5, 89-94.
29. Hameed S., Robinson D.J., (2004) Begomoviruses from mungbeans in Pakistan: epitope profiles, DNA A sequences and phylogenetic relationships. Archives of Virology, 149, 809-819.
30. Haq Q.M.I., Ali A., Malathi V.G., (2010) Engineering resistance against Mungbean yellow mosaic India virus using antisense RNA. Indian Journal of Virology, 21, 82-85.
31. Hartman G.L., Sinclair J.B., Rupe J.C., (Eds) (1999) Compendium of Soybean Diseases. 4th edn. St. Paul, MN, USA: American Phytopathological Society.
32. Honda Y., Iwaki M., Saito Y., Thongmeearkom P., Kiratiya-Angul K., Deema N., (1983) Mechanical transmission, purification, and some properties of whitefly-borne mung bean yellow mosaic virus in Thailand. Plant Disease, 67, 801-804.
33. Hughes J.d'A., Shoyinka S.A., (2003) Overview of viruses of legumes other than groundnut in Africa. In Plant Virology in Sub-Saharan African: Proceeding of a Conference Organized by IITA, pp. 553-568. Eds, J.d'A. Hughes, and, B. Odu,. Ibadan, Nigeria: International Institute of Tropical Agriculture.
34. Idris A.M., Hiebert E., Bird J., Brown J.K., (2003) Two newly described begomoviruses of Macroptilium lathyroides and common bean. Phytopathology, 93, 774-783.
35. Ilyas M., Qazi J., Mansoor S., Briddon R.W., (2009) Molecular characterisation and infectivity of a "Legumovirus" (genus Begomovirus: family Geminiviridae) infecting the leguminous weed Rhynchosia minima in Pakistan. Virus Research, 145, 279-284.
36. Ilyas M., Qazi J., Mansoor S., Briddon R.W., (2010) Genetic diversity and phylogeography of begomoviruses infecting legumes in Pakistan. Journal of General Virology, 91, 2091-2101.
37. John P., Sivalingam P.N., Haq Q.M.I., Kumar N., Mishra A., Briddon R.W., Malathi V.G., (2008) Cowpea golden mosaic disease in Gujarat is caused by a Mungbean yellow mosaic India virus isolate with a DNA B variant. Archives of Virology, 153, 1359-1365.
38. Karthikeyan A.S., Vanitharani R., Balaji V., Anuradha S., Thillaichidambaram P., Shivaprasad P.V., Parameswari C., Balamani V., Saminathan M., Veluthambi K., (2004) Analysis of an isolate of Mungbean yellow mosaic virus (MYMV) with a highly variable DNA B component. Archives of Virology, 149, 1643-1652.
39. Malik I.A., (1992) Breeding for resistance to MYMV and its vector in Pakistan. In Mungbean Yellow Mosaic Disease, pp. 641-650. Bangkok, Thailand: Asian Vegetable Research and Development Center, Shanhua, Tainan, Taiwan.
40. Maruthi M.N., Manjunatha B., Rekha A.R., Govindappa M.R., Colvin J., Muniyappa V., (2006) Dolichos yellow mosaic virus belongs to a distinct lineage of Old World begomoviruses; its biological and molecular properties. Annals of Applied Biology, 149, 187-195.
41. Morales F.J., Anderson P.K., (2001) The emergence and dissemination of whitefly-transmitted geminiviruses in Latin America. Archives of Virology, 146, 415-441.
42. Morinaga T., Ikegami M., Miura K., (1993) The nucleotide sequence and genome structure of mung bean yellow mosaic geminivirus. Microbiology and Immunology, 37, 471-476.
43. Moriones E., Navas-Castillo J., (2008) Rapid evolution of the population of begomoviruses associated with the tomato yellow leaf curl disease after invasion of a new ecological niche. Spanish Journal of Agricultural Research, 6 (Special issue), 147-159.
44. Moriones E., García-Andrés S., Navas-Castillo J., (2007) Recombination in the TYLCV complex: a mechanism to increase genetic diversity. Implications for plant resistance development. In Tomato Yellow Leaf Curl Virus Disease: Management, Molecular Biology, Breeding for Resistance, pp. 119-138. Ed., H. Czosnek,. Dordrecht, the Netherlands: Springer.
45. Padidam M., Sawyer S., Fauquet C.M., (1999) Possible emergence of new geminiviruses by frequent recombination. Virology, 265, 218-225.
46. Pal S.S., Dhaliwal H.S., Bains S.S., (1991) Inheritance of resistance to yellow mosaic virus in some Vigna species. Plant Breeding, 106, 168-171.
47. Pant V., Gupta D., Choudhury N.R., Malathi V.G., Varma A., Mukherjee S.K., (2001) Molecular characterization of the Rep protein of the blackgram isolate of Indian mungbean yellow mosaic virus. Journal of General Virology, 82, 2559-2567.
48. Pooggin M., Shivaprasad P.V., Veluthambi K., Hohn T., (2003) RNAi targeting of DNA virus in plants. Nature Biotechnology, 21, 131-132.
49. Qazi J., Ilyas M., Mansoor S., Briddon R.W., (2007) Legume yellow mosaic viruses: genetically isolated begomoviruses. Molecular Plant Pathology, 8, 343-348.
50. Rodriguez-Pardina P.E., Hanada K., Laguna I.G., Zerbini F.M., Ducasse D.A., (2011) Molecular characterization and relative incidence of bean- and soybean-infecting begomoviruses in northwestern Argentina. Annals of Applied Biology, 158, 69-78.
51. Rouhibakhsh A., Priya J., Periasamy M., Haq Q.M.I., Malathi V.G., (2008) An improved DNA isolation method and PCR protocol for efficient detection of multicomponents of begomovirus in legumes. Journal of Virological Methods, 147, 37-42.
52. Samretwanich K., Kittipakorn K., Chiemsombat P., Ikegami M., (2001) Complete nucleotide sequence and genome organization of soybean crinkle leaf virus. Journal of Phytopathology, 149, 333-336.
53. Schwartz H.F., Steadman J.R., Hall R., Forster R.L., (Eds) (2005) Compendium of Bean Diseases. 2nd edn. St. Paul, MN, USA: American Phytopathological Society.
54. Shahid M.S., Ikegami M., Natsuaki K.T., (2012) First report of Mungbean yellow mosaic India virus on Lima bean affected by yellow mosaic disease in Nepal. Australasian Plant Disease Notes, 7, 85-89.
55. Singh S.K., Chakraborty S., Singh A.K., Pandey P.K., (2006) Cloning, restriction mapping and phylogenetic relationship of genomic components of MYMIV from Lablab purpureus. Bioresource Technology, 97, 1807-1814.
56. Singh P.K., Rai N., Verma A., Singh D.V., (2009) Dolichos yellow mosaic virus influenced by environmental conditions. Annals of Plant Protection Sciences, 17, 164-166.
57. Surendranath B., Usharani K.S., Nagma A., Victoria A.K., Malathi V.G., (2005) Absence of interaction of genomic components and complementation between Mungbean yellow mosaic India virus isolates in cowpea. Archives of Virology, 150, 1833-1844.
58. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S., (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
59. Tsai W.S., Shih S.L., Kenyon L., Green S.K., Jan F.-J., (2011a) Temporal distribution and pathogenicity of the predominant tomato-infecting begomoviruses in Taiwan. Plant Pathology, 60, 787-799.
60. Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L., Jan F.-J., (2011b) Distribution and genetic diversity of begomoviruses infecting tomato and pepper plants in the Philippines. Annals of Applied Biology, 158, 275-287.
61. Usharani K.S., Surendranath B., Haq Q.M.R., Malathi V.G., (2004) Yellow mosaic virus infecting soybean in northern India is distinct from the species infecting soybean in southern and western India. Current Science, 86, 845-850.
62. Varma A., Malathi V.G., (2003) Emerging geminivirus problems: A serious threat to crop production. Annals of Applied Biology, 142, 145-164.
63. Varma A,., Dhar A.K., Mandal B., (1992) MYMV transmission and control in India. In Mungbean Yellow Mosaic Disease: Proceeding of an International Workshop, Bangkok, Thailand, 2-3 July 1991, pp. 8-27. Eds S.K. Green and D.-H. Kim. Taiwan: Asian Vegetable Research and Development Center, Publication No. 92-373.
64. Varma A., Mandal B., Singh M.K., (2011) Global emergence and spread of whitefly (Bemisia tabaci) transmitted geminiviruses. In The Whitefly, Bemisia tabaci (Homoptera: Aleyrodidae) Interaction with Geminivirus-infected Host Plants: Bemisia tabaci, Host Plants and Geminiviruses, pp. 205-292. Ed, W.M.O. Thompson,. Dordrecht, the Netherlands: Springer.
65. Verma M.M., Sandhu S.S., (1992) Breeding for resistance/tolerance to MYMV and its vector in India. In Mungbean Yellow Mosaic Disease: Proceeding of An International Workshop, Bangkok, Thailand, 2-3 July 1991, pp. 28-40. Eds S.K. Green and D.-H. Kim. Taiwan: Asian Vegetable Research and Development Center, Publication No. 92-373.
66. Yadav R.K., Shukla R.K., Chattopadhyay D., (2009) Soybean cultivar resistant to Mungbean yellow mosaic India virus infection induces viral RNA degradation earlier than the susceptible cultivar. Virus Research, 144, 89-95.
67. Zaim M., Kumar Y., Hallan V., Zaidi A., (2011) Velvet bean severe mosaic virus: a distinct begomovirus species causing severe mosaic in Mucuna pruriens (L.) DC. Virus Genes, 43, 138-146.