Identification and sequence analysis of potyviruses infecting crops in Vietnam

Archives of Virology

Volumn 153, Issue 1, 2008, Pages 45-60

  Ha, C ^a   Revill, P ^a   Harding, R M ^a   Vu, M ^b   Dale, J L ^a  

^a QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

^b VIETNAM NATIONAL UNIVERSITY OF AGRICULTURE   (Viet Nam)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CLASSIFICATION; CROP; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; MOSAIC VIRUS; PLANT DISEASE; POTYVIRUS; SEQUENCE ANALYSIS; VIET NAM; VIROLOGY; VIRUS GENOME;

CROPS, AGRICULTURAL; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; MOSAIC VIRUSES; PLANT DISEASES; POTYVIRUS; SEQUENCE ANALYSIS; VARIATION (GENETICS); VIETNAM;

ALLIUM ASCALONICUM; ALLIUM CEPA; ALLIUM PORRUM; ARACHIS HYPOGAEA; BEAN COMMON MOSAIC VIRUS; BRASSICA RAPA SUBSP. RAPA; CHILLI VEINAL MOTTLE VIRUS; CROTALARIA; CROTALARIA ANAGYROIDES; DASHEEN MOSAIC VIRUS; IPOMOEA BATATAS; LEEK YELLOW STRIPE VIRUS; ONION YELLOW DWARF VIRUS; ORYCTOLAGUS CUNICULUS; PEANUT STUNT VIRUS; POTATO VIRUS Y; POTYVIRUS; SHALLOT YELLOW STRIPE VIRUS; SORGHUM MOSAIC VIRUS; SUGARCANE MOSAIC VIRUS; SWEET POTATO FEATHERY MOTTLE VIRUS; TURNIP MOSAIC VIRUS; TYPHONIUM TRILOBATUM; ZUCCHINI YELLOW MOSAIC VIRUS;

EID: 38549101182     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-007-1067-1     Document Type: Article

References (34)

1. MJ Adams JF Antoniw F Beaudoin 2005 Overview and analysis of the polyprotein cleavage sites in the family Potyviridae Mol Plant Pathol 6 471 487
2. MJ Adams JF Antoniw CM Fauquet 2005 Molecular criteria for genus and species discrimination within the family Potyviridae Arch Virol 150 459 479
3. MF Bateson J Henderson W Chaleeprom AJ Gibbs JL Dale 1994 Papaya ringspot potyvirus - isolate variability and the origin of PRSV type-P (Australia) J Gen Virol 75 3547 3553
4. MF Bateson RE Lines P Revill W Chaleeprom CV Ha AJ Gibbs JL Dale 2002 On the evolution and molecular epidemiology of the potyvirus Papaya ringspot virus J Gen Virol 83 2575 2585
5. KE Bell JL Dale CV Ha MT Vu PA Revill 2002 Characterisation of Rep-encoding components associated with Banana bunchy top nanovirus in Vietnam Arch Virol 147 695 707
6. Berger PH, Adams MJ, Barnett OW, Brunt AA, Hammond J, Hill JH, Jordan RL, Kashiwazaki S, Rybicki E, Spence N, Stenger DC, Ohki ST, Uyeda I, van Jaayen A, Valkonen J, Vetten HJ (2005) Potyviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy. VIIIth Report of the International Committee on Taxonomy of Viruses. Elsevier/ Academic Press, London
7. CC Chen CH Chao SD Yeh HT Tsai CA Chang 2003 Identification of Turnip mosaic virus isolates causing yellow stripe and spot on calla lily Plant Dis 87 901 905
8. J Chen JP Chen JS Chen MJ Adams 2001 Molecular characterisation of an isolate of Dasheen mosaic virus from Zantedeschia aethiopica in China and comparisons in the genus Potyvirus Arch Virol 146 1821 1829
9. J Chen JP Chen MJ Adams 2002 Characterisation of potyviruses from sugarcane and maize in China Arch Virol 147 1237 1246
10. C Desbiez C Wipf-Scheibel H Lecoq 2002 Biological and serological variability, evolution and molecular epidemiology of Zucchini yellow mosaic virus (ZYMV, Potyvirus) with special reference to Caribbean islands Virus Res 85 5 16
11. A Fanigliulo S Comes R Pacella B Harrach DP Martin A Crescenzi 2005 Characterisation of Potato virus Y nnp strain inducing veinal necrosis in pepper: a naturally occurring recombinant strain of PVY Arch Virol 150 709 720
12. K Farreyrol MN Pearson M Grisoni D Cohen D Beck 2006 Vanilla mosaic virus isolates from French Polynesia and the Cook Islands are Dasheen mosaic virus strains that exclusively infect vanilla Arch Virol 151 905 919
13. CF Gambley JE Thomas LV Magnaye L Herradura 2004 Abaca mosaic virus: a distinct strain of Sugarcane mosaic virus Australas Plant Pathol 33 475 484
14. AL Gemechu P Chiemsombat S Attathom K Reanwarakorn R Lersrutaiyotin 2006 Cloning and sequence analysis of coat protein gene for characterization of Sugarcane mosaic virus isolated from sugarcane and maize in Thailand Arch Virol 151 167 172
15. AJ Gibbs AM Mackenzie MJ Gibbs 2003 The 'potyvirid primers' will probably provide phylogenetically informative DNA fragments from all species of Potyviridae J Virol Methods 112 41 44
16. C Ha S Coombs P Revill R Harding M Vu J Dale 2006 Corchorus yellow vein virus, a New World geminivirus from the Old World J Gen Virol 87 997 1003
17. NB Hao SE Albrechtsen M Nicolaisen 2003 Detection and identification of the blackeye cowpea mosaic strain of Bean common mosaic virus in seeds of Vigna unguiculata spp. from North Vietnam Australas Plant Pathol 32 505 509
18. S Kumar K Tamura M Nei 2004 MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163
19. AM Mackenzie M Nolan KJ Wei MA Clements D Gowanlock BJ Wallace AJ Gibbs 1998 Ceratobium mosaic potyvirus: another virus from orchids Arch Virol 143 903 914
20. GI Mink HJ Vetten SD Wyatt PH Berger MJ Silbernagel 1999 Three epitopes located on the coat protein amino terminus of viruses in the bean common mosaic potyvirus subgroup Arch Virol 144 1173 1189
21. A Mishra VR Gohel GB Valand JG Patel DD Shukla 1993 Peanut stripe virus-disease of groundnut - a review Int J Pest Manag 39 210 215
22. K Ohshima Y Yamaguchi R Hirota T Hamamoto K Tomimura ZY Tan T Sano F Azuhata JA Walsh J Fletcher JS Chen A Gera A Gibbs 2002 Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread J Gen Virol 83 1511 1521
23. S Pappu H Pappu E Rybicki C Niblett 1994 Unusual amino-terminal sequence repeat characterizes the capsid protein of Dasheen mosaic potyvirus J Gen Virol 75 239 242
24. PA Revill CV Ha RE Lines KE Bell MT Vu JL Dale 2004 PCR and ELISA-based virus surveys of banana, papaya and cucurbit crops in Vietnam Asia Pac J Mol Biol Biotechnol 12 27 32
25. BC Rodoni JL Dale RM Harding 1999 Characterization and expression of the coat protein-coding region of Banana bract mosaic potyvirus, development of diagnostic assays and detection of the virus in banana plants from five countries in southeast Asia Arch Virol 144 1725 1737
26. YH Shi XY Hong J Chen MJ Adams HY Zheng L Lin BX Qin JP Chen 2005 Further molecular characterisation of potyviruses infecting aroid plants for medicinal use in China Arch Virol 150 125 135
27. Shukla DD, Ward CW, Brunt AA, Berger PH (1998) Potyviridae family. AAB Descriptions of plant viruses No. 366
28. C Spetz AM Taboada S Darwich J Ramsell LF Salazar JPT Valkonen 2003 Molecular resolution of a complex of potyviruses infecting solanaceous crops at the centre of origin in Peru J Gen Virol 84 2565 2578
29. ZY Tan Y Wada JS Chen K Ohshima 2004 Inter- and intralineage recombinants are common in natural populations of Turnip mosaic virus J Gen Virol 85 2683 2696
30. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882
31. K Tomimura AJ Gibbs CE Jenner JA Walsh K Ohshima 2003 The phylogeny of Turnip mosaic virus; comparisons of 38 genomic sequences reveal a Eurasian origin and a recent 'emergence' in East Asia Mol Ecol 12 2099 2111
32. K Tomimura J Spak N Katis CE Jenner JA Walsh AJ Gibbs K Ohshima 2004 Comparisons of the genetic structure of populations of Turnip mosaic virus in West and East Eurasia Virology 330 408 423
33. HJ Vetten SK Green DE Lesemann 1992 Characterization of Peanut stripe virus isolates from soybean in Taiwan J Phytopathol 135 107 124
34. MF Zhao J Chen HY Zheng MJ Adams JP Chen 2003 Molecular analysis of Zucchini yellow mosaic virus isolates from Hangzhou, China J Phytopathol 151 307 311