Two new 'legumoviruses' (genus Begomovirus) naturally infecting soybean in Nigeria

Archives of Virology

Volumn 155, Issue 5, 2010, Pages 643-656

  Alabi, Olufemi J ^a   Kumar, P Lava ^b   Mgbechi Ezeri, J U ^b,c   Naidu, Rayapati A ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

^b INTERNATIONAL INSTITUTE OF TROPICAL AGRICULTURE   (Nigeria)

^c National Institute of Science Laboratory Technology   (Niger)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

AMINO ACID SEQUENCE; ARTICLE; BEGOMOVIRUS; CLASSIFICATION; GENETIC RECOMBINATION; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NIGERIA; NOMENCLATURE; PHYLOGENY; SOYBEAN; VIROLOGY;

AMINO ACID SEQUENCE; BEGOMOVIRUS; DNA, VIRAL; MOLECULAR SEQUENCE DATA; NIGERIA; PHYLOGENY; RECOMBINATION, GENETIC; SOYBEANS; TERMINOLOGY AS TOPIC;

BEGOMOVIRUS; CENTROSEMA PUBESCENS; COWPEA GOLDEN MOSAIC VIRUS; GEMINIVIRIDAE; GLYCINE MAX; MUNGBEAN YELLOW MOSAIC INDIA VIRUS; PUERARIA MONTANA VAR. LOBATA;

EID: 77951977371     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-010-0630-3     Document Type: Article

References (66)

1. Alabi OJ, Kumar PL, Naidu RA (2008) Multiplex PCR method for the detection of African cassava mosaic virus and East African cassava mosaic Cameroon virus in cassava. J Virol Methods 154: 11-120.
2. Alabi OJ, Ogbe FO, Bandyopadhyay R, Kumar PL, Dixon AGO, Jd'A Hughes, Naidu RA (2008) Alternate hosts of African cassava mosaic virus and East African cassava mosaic Cameroon virus in Nigeria. Arch Virol 153: 743-1747.
3. Argüello-Astorga GR, Guevara-González LR, Herrera-Estrella LR, Rivera-Bustamante RF (1994) Geminivirus replication origins have a group-specific organization of iterative elements: a model for replication. Virology 203: 90-100.
4. Argüello-Astorga GR, Ruiz-Medrano R (2001) An iteron-related domain is associated to motif 1 in the replication proteins of geminiviruses: identification of potential interacting amino acid base pairs by a comparartive approach. Arch Virol 146: 1465-1485.
5. Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X, Fauquet CM (2008) Recommendations for the classification and nomenclature of the DNA-beta satellites of begomoviruses. Arch Virol 153: 763-781.
6. Briddon RW, Bull SE, Amin I, Mansoor S, Bedford ID, Rishi N, Siwatch SS, Zafar Y, Abedel-Salam AM, Markham PG (2004) Diversity of DNA1: a satellite-like molecule associated with monopartite begomovirus-DNA β complexes. Virology 324: 462-474.
7. Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2001) Universal primers for the PCR-mediated amplification of DNA β; a molecule associated with some monopartite begomoviruses. Mol Biotechnol 18: 1-4.
8. Briddon RW, Mansoor S, Bedford ID, Pinner MS, Markham PG (2000) Clones of cotton leaf curl geminivirus induce symptoms atypical of cotton leaf curl disease. Virus Genes 20: 17-24.
9. Briddon RW, Stanley J (2006) Subviral agents associated with plant single-stranded DNA viruses. Virology 344: 198-210.
10. Buddenhagen IW (1977) Resistance and vulnerability of tropical crops in relation to their evaluation and breeding. Ann N Y Acad Sci 287: 309-326.
11. Bull SE, Briddon RW, Sserubombwe WS, Ngugi K, Markham PG, Stanley J (2006) Genetic diversity and phylogeography of cassava mosaic viruses in Kenya. J Gen Virol 87: 3053-3065.
12. Bull SE, Briddon RW, Sserubombwe WS, Ngugi K, Markham PG, Stanley J (2007) Infectivity, pseudorecombination and mutagenesis of Kenyan cassava mosaic begomoviruses. J Gen Virol 88: 1624-1633.
13. Clark MF, Adams AN (1977) Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. J Gen Virol 34: 475-483.
14. Dashiell KE, Bello LL, Root WR (1987) Breeding soybeans for the tropics. In: Singh SR, Rachie KO, Dashiell KE (eds) Soybean for the tropics. Research, production and utilisation. Wiley, Chichester, pp 3-16.
15. Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1: 19-21.
16. Deng D, McGrath PF, Robinson DJ, Harrison BD (1994) Detection and differentiation of whitefly-transmitted geminiviruses in plants and vector insects by the polymerase chain reaction with degenerate primers. Ann Appl Biol 125: 327-336.
17. Dugje IY, Omoigui LO, Ekeleme F, Bandyopadhyay R, Kumar PL, Kamara YA (2009) Farmers' guide to soybean production in northern Nigeria. International Institute of Tropical Agriculture, Ibadan, Nigeria, p 21.
18. Etessami P, Watts J, Stanley J (1989) Size reversion of African cassava mosaic virus coat protein gene deletion mutants during infection of Nicotiana benthamiana. J Gen Virol 70: 277-289.
19. FAOSTAT (2009) FAOSTAT. Available at http://faostat. fao. org. Accessed 26 May 2009; verified 10 October 2009. FAO, Rome, Italy. FAO Statistics, http://www. fao. org.
20. Fauquet CM, Maxwell DP, Gronenborn B, Stanley J (2000) Revised proposal for naming geminiviruses. Arch Virol 145: 1743-1761.
21. Fauquet CM, Sawyer S, Idris AM, Brown JK (2005) Sequence analysis and classification of apparent recombinant begomoviruses infecting tomato in the Nile and Mediterranean basins. Phytopath 95: 549-555.
22. Fauquet CM, Stanley J (2005) Revising the way we conceive and name viruses below the species level: a review of geminivirus taxonomy calls for new standardized isolate descriptors. Arch Virol 150: 2151-2179.
23. Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153: 783-821.
24. Fernandes FR, Cruz ARR, Faria JC, Zerbini FM, Aragão FJL (2009) Three distinct begomoviruses associated with soybean in central Brazil. Arch Virol 154: 1567-1570.
25. Gilbertson RL, Faria JC, Hanson SF, Morales FJ, Ahlquist P, Maxwell DP, Russell DR (1991) Cloning of the complete DNA genomes of four bean-infecting geminiviruses and determining their infectivity by electric discharge particle acceleration. Phytopathology 81: 980-985.
26. Girish KR, Usha R (2005) Molecular characterization of two soybean-infecting begomoviruses from India and evidence for recombination among legume-infecting begomoviruses from South-East Asia. Virus Res 108: 67-176.
27. Guerra-Peraza O, Kirk D, Seltzer V, Veluthambi K, Schmit AC, Hohn T, Herzog E (2005) Coat proteins of Rice tungro bacilliform virus and Mungbean yellow mosaic virus contain multiple nuclear localization signals and interact with importin α. J Gen Virol 86: 1815-1826.
28. Ha C, Coombs S, Revill P, Harding R, Vu M, Dale J (2006) Corchorus yellow vein virus, a New World geminivirus from the Old World. J Gen Virol 87: 997-1003.
29. Ha C, Coombs S, Revill P, Harding R, Vu M, Dale J (2008) Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation. J Gen Virol 89: 312-326.
30. Harrison BD, Swanson MM, Fargette D (2002) Begomovirus coat protein: serology, variation and functions. Physiol Mol Plant Pathol 60: 257-271.
31. Hernández-Zepeda C, Idris A, Carnevali G, Brown JK, Moreno-Valenzuela O (2007) Molecular characterization and phylogenetic relationships of two new bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico. Virus Genes 35: 369-377.
32. Hughes Jd'A, Shoyinka SA (2004) Overview of viruses of legumes other than groundnut in Africa. In: Hughes Jd'A, Odu BO (eds) Plant virology in sub-Saharan Africa Conference Proceedings, IITA, Ibadan, Nigeria, pp 553-568.
33. Ilyas M, Qazi J, Mansoor S, Briddon RW (2009) Molecular characterisation and infectivity of a "Legumovirus" (genus Begomovirus: family Geminiviridae) infecting the leguminous weed Rhynchosia minima in Pakistan. Virus Res 145: 279-284.
34. Jovel J, Reski G, Rothenstein D, Ringel M, Frischmuth T, Jeske H (2004) Sida micrantha mosaic is associated with a complex infection of begomoviruses different from Abutilon mosaic virus. Arch Virol 149: 829-841.
35. Karthikeyan AS, Vanitharani R, Balaji V, Anuradha S, Thillaichidambaram P, Shivaprasad PV, Parameswari C, Balamani V, Saminathan M, Veluthambi K (2004) Analysis of an isolate of Mungbean yellow mosaic virus (MYMV) with a highly variable DNA B component. Arch Virol 149: 1643-1652.
36. Kon T, Rojas MR, Abdourhamane IK, Gilbertson RL (2009) The roles and interactions of begomoviruses and satellite DNAs associated with okra leaf curl disease in Mali, West Africa. J Gen Virol 90: 1001-1013.
37. Kunik T, Palanichelvam K, Czosnek H, Citovsky V, Gafni Y (1998) Nuclear import of the capsid protein of Tomato yellow leaf curl virus (TYLCV) in plant and insect cells. Plant J 13: 393-399.
38. Lefeuvre P, Martin DP, Hoareau M, Naze F, Delatte H, Thierry M, Varsani A, Becker N, Reynaud B, Lett J-M (2007) Begomovirus 'melting pot' in the south-west Indian Ocean islands: molecular diversity and evolution through recombination. J Gen Virol 88: 3458-3468.
39. Lozano G, Trenado HP, Valverde RA, Navas-Castillo J (2009) New begomovirus species of recombinant nature in sweet potato (Ipomoea batatas) and I. indica: taxonomic and phylogenetic implications. J Gen Virol 90: 2550-2562.
40. Martin DP, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
41. Maruthi MN, Manjunatha B, Rekha AR, Govindappa MR, Colvin J, Muniyappa V (2006) Dolichos yellow mosaic virus belongs to a distinct lineage of Old World begomoviruses; its biological and molecular properties. Ann Appl Biol 149: 187-195.
42. Mgbechi-Ezeri JU, Alabi OJ, Naidu RA, Kumar PL (2008) First report of the occurrence of African cassava mosaic virus in soybean in Nigeria. Plant Dis 92: 1709.
43. Nawaz-ul-Rehman M, Fauquet CM (2009) Evolution of geminiviruses and their satellites. FEBS Lett 583: 1825-1832.
44. Ndunguru J, Legg JP, Aveling TAS, Thompson G, Fauquet CM (2005) Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of cassava geminiviruses in Africa and evidence for East Africa being a center of diversity of cassava geminiviruses. Virol J 2: 21.
45. Padidam M, Beachy RN, Fauquet CM (1996) The role of AV2 ('precoat') and coat protein in viral replication and movement in tomato leaf curl geminivirus. Virology 224: 390-404.
46. Padidam M, Sawyer S, Fauquet CM (1999) Possible emergence of new geminiviruses by frequent recombination. Virology 265: 218-225.
47. Patil BL, Fauquet CM (2009) Cassava mosaic geminiviruses: actual knowledge and perspectives. Mol Plant Pathol 10: 685-701.
48. Paximadis M, Idris AM, Torres-Jerez I, Villarreal A, Rey MEC, Brown JK (1999) Characterization of tobacco geminiviruses in the Old and New World. Arch Virol 144: 703-717.
49. Polston JE, Anderson PK (1997) The emergence of whitefly-transmitted geminiviruses of tomato in the Western Hemisphere. Plant Dis 81: 1358-1369.
50. Quazi J, Ilyas M, Mansoor S, Briddon RW (2007) Legume yellow mosaic viruses: genetically isolated begomoviruses. Mol Plant Pathol 8: 343-348.
51. Raghavan V, Malik PS, Choudhury NR, Mukherjee SK (2004) The DNA A component of a plant geminivirus (Indian mungbean yellow mosaic virus) replicates in budding yeast cells. J Virol 78: 2405-2413.
52. Rojas MR, Gilbertson RL, Russell DR, Maxwell DP (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Dis 77: 340-347.
53. Rojas MR, Jiang H, Salati R, Xoconostle-Cazares B, Sudarshana MR, Lucas WJ, Gilbertson RL (2001) Functional analysis of proteins involved in movement of the monopartite begomovirus, Tomato yellow leaf curl virus. Virology 291: 110-125.
54. Rojas MR, Hagen C, Lucas WJ, Gilbertson RL (2005) Exploiting chinks in the plant's armor: evolution and emergence of geminiviruses. Annu Rev Phytopathol 43': 361-394.
55. Rothenstein D, Krenz B, Selchow O, Jeske H (2007) Tissue and cell tropism of Indian cassava mosaic virus (ICMV) and its AV2 (precoat) gene product. Virology 359: 137-145.
56. Rouhibakhsh A, Malathi VG (2005) Severe leaf curl disease of cowpea-a new disease of cowpea in northern India caused by Mungbean yellow mosaic India virus and a satellite DNA β. Plant Pathol 54: 259.
57. Rybicki EP (1994) A phylogenetic and evolutionary justification for 3 genera of Geminiviridae. Arch Virol 139: 49-77.
58. Samretwanich K, Kittipakorn K, Chiemsombat P, Ikegami M (2001) Complete nucleotide sequence and genome organization of Soybean crinkle leaf virus. J Phytopathol 149: 333-336.
59. Stanley J, Bisaro DM, Briddon RW, Brown JK, Fauquet CM, Harrison BD, Rybicki EP, Stenger DC (2005) Family Geminiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eighth report of the international committee on taxonomy of viruses. Elsevier Academic Press, San Diego/London, pp 301-326.
60. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
61. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
62. Thottappilly G, Rossel HW (1992) Virus diseases of cowpea in tropical Africa. Trop Pest Manag 38: 337-348.
63. Thresh JM (1991) The ecology of tropical plant viruses. Plant Pathol 40: 324-339.
64. Unseld S, Hohnle M, Ringel M, Frischmuth T (2001) Subcellular targeting of the coat protein of African cassava mosaic geminivirus. Virology 286: 373-383.
65. Valverde RA, Sima J, Lotrakul P (2004) Whitefly transmission of sweet potato viruses. Virus Res 100: 123-128.
66. Varma A, Malathi VG (2003) Emerging geminivirus problems: a serious threat to crop production. Ann Appl Biol 142: 145-164.