Distribution and genetic diversity of begomoviruses infecting tomato and pepper plants in the Philippines

Annals of Applied Biology

Volumn 158, Issue 3, 2011, Pages 275-287

  Tsai, W S ^a,b   Shih, S L ^a   Venkatesan, S G ^a   Aquino, M U ^c   Green, S K ^a   Kenyon, L ^a   Jan, F J ^b  

^a AVRDC THE WORLD VEGETABLE CENTER   (Taiwan)

^b NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^c Bureau of Agricultural Research   (Philippines)

Author keywords

Begomovirus; Geminiviridae; genetic recombination; PCR; phylogenetic analysis

Indexed keywords

DISEASE CONTROL; FRUIT; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; HERB; PHYLOGENETICS; POLYMERASE CHAIN REACTION; RECOMBINATION; VIRAL DISEASE;

PHILIPPINES;

AGERATUM YELLOW VEIN VIRUS; AGERATUM YELLOW VEIN VIRUS-[TOMATO]; BEGOMOVIRUS; GEMINIVIRIDAE; LYCOPERSICON ESCULENTUM; TOMATO LEAF CURL PHILIPPINES VIRUS;

EID: 79954602548     PISSN: 00034746     EISSN: 17447348     Source Type: Journal    
DOI: 10.1111/j.1744-7348.2011.00462.x     Document Type: Article

References (48)

1. Benigno D.A., (1979) Leaf curl disease of squash. Philippine Agriculturalist, 61, 304-305.
2. Chellappan P., Masona M.V., Vanitharani R., Taylor N.J., Fauquet C.M., (2004) Broad spectrum resistance to ssDNA viruses associated with transgene-induced gene silencing in cassava. Plant Molecular Biology, 56, 601-611.
3. Clark M.F., Adams A.N., (1977) Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. Journal of General Virology, 34, 475-483. (Pubitemid 8051946)
4. De Barro P.J., Hidayat S.H., Frohlich D., Subandiyah S., Ueda S., (2008) A virus and its vector, pepper yellow leaf curl virus and Bemisia tabaci, two new invaders of Indonesia. Biological Invasions, 10, 411-433. (Pubitemid 351422008)
5. Dolores L.M., Bajet N.B., (1995) Isolation and transmission of tomato leaf curl virus in the Philippines. Philippine Phytopathology, 31, 40-51.
6. Dolores L.M., Pissawan C., (1994) Detection of leaf curl virus in pepper by using non-productive DNA probe. Philippine Journal of Crop Science, 19, 80.
7. Dolores L.M., Valdez R.B., (1988) Identification of squash viruses and screening for resistance. Philippine Phytopathology, 24, 43-52.
8. Fauquet C.M., Briddon R.W., Brown J.K., Moriones E., Stanley J., Zerbini M., Zhou X., (2008) Geminivirus strain demarcation and nomenclature. Archives of Virology, 153, 783-821.
9. Gibbs M.J., Armstrong J.S., Gibbs A.J., (2000) Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics, 16, 573-582.
10. Gilbertson R.L., Rojas M.R., Russell D.R., Maxwell D.P., (1991) Use of the asymmetric polymerase chain reaction and DNA sequencing to determine genetic variability of bean golden mosaic geminivirus in the Dominican Republic. Journal of General Virology, 72, 2843-2848.
11. Green S.K., Shanmugasundaram S., (2007) AVRDC's international networks to deal with the tomato yellow leaf curl disease: the needs of developing countries. In Tomato Yellow Leaf Curl Virus Disease: Management, Molecular Biology, Breeding for Resistance, pp. 417-439. Ed., H. Czosnek,. Dordrecht, the Netherlands: Springer.
12. Green S.K., Tsai W.S., Shih S.L., Black L.L., Rezaian A., Rashid M.H., Roff M.M.N., Myint Y.Y., Hong L.T.A., (2001) Molecular characterization of begomoviruses associated with leaf curl disease in Bangladesh, Laos, Malaysia, Myanmar, and Vietnam. Plant Disease, 85, 1286.
13. Green S.K., Tsai W.S., Shih S.L., Huang Y.C., Lee L.M., (2005) Diversity of begomoviruses of tomato and weeds in Asia. In Proceeding of the International Seminar on Whitefly Management and Control Strategy, pp. 19-66. Eds, T.-Y. Ku, C.-L. Wang, and, C.-A. Chang,. Taipei, Taiwan, ROC: Food and Fertilizer Technology Center for the Asian and Pacific Region.
14. Jan F.-J., Fagoaga C., Pang S.Z., Gonsalves D., (2000) A single chimeric transgene derived from two distinct viruses confers multi-virus resistance in transgenic plants through homology-dependent gene silencing. Journal of General Virology, 81, 2103-2109. (Pubitemid 30601325)
15. Kon T., Dolores L.M., Murayama A., Bajet N.B., Hase S., Takahashi H., Ikegami M., (2002) Genome organization of an infectious clone of Tomato leaf curl virus (Philippines), a new monopartite Begomovirus. Journal of Phytopathology, 150, 587-591. (Pubitemid 36108328)
16. Kon T., Dolores L.M., Bajet N.B., Hase S., Takahashi H., Ikegami M., (2003) Molecular characterization of a strain of Squash leaf curl China virus from the Philippines. Journal of Phytopathology, 151, 535-539. (Pubitemid 37435835)
17. Legg J.P., (1999) Emergence, spread and strategies for controlling the pandemic of cassava mosaic virus disease in east and central Africa. Crop Protection, 18, 627-637. (Pubitemid 30065261)
18. Lin C.-Y., Ku H.-M., Tsai W.S., Green S.K., Jan F.-J., (2011) Resistance to a DNA and a RNA virus in transgenic plants by using a single chimeric transgene construct. Transgenic Research. DOI: 10.1007/s11248-010-9412-7.
19. Makkouk K.M., Shehab S., Majdalani S.E., (1979) Tomato yellow leaf curl: incidence, yield losses and transmission in Lebanon. Journal of Phytopathology, 96, 263-267.
20. Martin D., Rybicki E., (2000) RDP: detection of recombination amongst aligned sequences. Bioinformatics, 16, 562-563.
21. Martin D.P., Williamson C., Posada D., (2005) RDP2: recombination detection and analysis from sequence alignment. Bioinformatics, 21, 260-262. (Pubitemid 40202028)
22. Matsuda N., Sharma P., Bajet N.B., Ikegami M., (2008) Molecular characterization of a new strain of tomato leaf curl Philippines virus and its associated satellite DNAβ molecule: further evidence for natural recombination amongst begomoviruses. Archives of Virology, 153, 961-967.
23. Maynard Smith J., (1992) Analyzing the mosaic structure of genes. Journal of Molecular Evolution, 34, 126-129.
24. Moriones E., García-Andrés S., Navas-Castillo J., (2007) Recombination in the TYLCV complex: a mechanism to increase genetic diversity. Implications for plant resistance development. In Tomato Yellow Leaf Curl Virus Disease: Management, Molecular Biology, Breeding for Resistance, pp. 119-138. Ed., H. Czosnek,. Dordrecht, the Netherlands: Springer.
25. Moriones E., Navas-Castillo J., (2008) Review. Rapid evolution of the population of begomoviruses associated with tomato leaf curl disease after invasion of a new ecological niche. Spanish Journal of Agricultural Research, 6, 147-159.
26. Navas-Castillo J., Sanchez-Campos S., Noris E., Louro D., Accotto G.P., Moriones E., (2000) Natural recombination between Tomato yellow leaf curl virus-Is and Tomato leaf curl virus. Journal of General Virology, 81, 2797-2801.
27. Padidam M., Sawyer S., Fauquet C.M., (1999) Possible emergence of new geminiviruses by frequent recombination. Virology, 165, 218-225. (Pubitemid 30022217)
28. Picó B., Díez M.J., Nuez F., (1996) Viral diseases causing the greatest economic losses to the tomato crop. II. The tomato yellow leaf curl virus-a review. Scientia Horticulturae, 67, 151-196.
29. Polston J.E., Anderson P.K., (1997) The emergence of whitefly-transmitted geminiviruses in tomato in the Western Hemisphere. Plant Disease, 81, 1358-1369. (Pubitemid 27518980)
30. Praveen S., Mishra A.K., Antony G., (2006) Viral suppression in transgenic plants expressing chimeric transgene from Tomato leaf curl virus and Cucumber mosaic virus. Plant Cell, Tissue and Organ Culture, 84, 47-53.
31. Posada D., Crandall K.A., (2001) Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proceedings of the National Academy of Sciences of the United States of America, 98, 13757-13762. (Pubitemid 33115971)
32. Retuerma M.L., Pableo G.O., Price W.C., (1971) Preliminary study of the transmission of Philippine tomato leaf curl virus by Bemisia tabaci. Philippine Phytopathology, 7, 29-34.
33. Rojas M.R., Gilbertson R.L., Russell D.R., Maxwell D.P., (1993) Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Disease, 77, 340-347.
34. Rojas A., Kvarnheden A., Marcenaro D., Valkonen J.P.T., (2005) Sequence characterization of Tomato leaf curl Sinaloa virus and Tomato severe leaf curl virus: phylogeny of New World begomoviruses and detection of recombination. Archives of Virology, 150, 1281-1299. (Pubitemid 40837318)
35. Saikia A.K., Muniyappa V., (1989) Epidemiology and control of tomato leaf curl virus in southern India. Tropical Agriculture, 66, 350-354.
36. Salminen M.O., Carr J.K., Burke D.S., McCutchan F.E., (1995) Identification of breakpoints in intergenotypic recombinants of HIV type 1 by Bootscanning. AIDS Research and Human Retroviruses, 11, 1423-1425.
37. Seal S.E., vandenBosch F., Jeger M.J., (2006) Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25, 23-46. (Pubitemid 43068153)
38. Shih S.L., Dolores L.M., Nakhla M.K., Maxwell D.P., Green S.K., (1997) A new geminivirus associated with leaf curl disease of tomato in the Philippines. Plant Protection Bulletin (Taiwan), 39, 394-395.
39. Shih S.L., Tsai W.S., Green S.K., Singh D., (2007) First report of tomato leaf curl Joydebpur virus infecting Chilli in India. Plant Pathology, 56, 341. (Pubitemid 46432709)
40. Soriano J.M., Villareal R.L., Roxas V.P., (1989) Tomato and pepper production in the Philippines. In Proceedings of the International Symposium on Integrated Management Practices, pp. 549-560. Shanhua, Tainan, Taiwan, ROC: AVRDC-The World Vegetable Center.
41. Stanley J., Bisaro D.M., Briddon R.W., Brown J.K., Fauquet C.M., Harrison B.D., Rybicki E.P., Stenger D.C., (2005) Geminiviridae. In Virus Taxonomy. VIIIth Report of ICTV, pp. 301-326. Eds, C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, and, L.A. Ball,. New York: Academic Press.
42. Sulandari S., Suseno R., Hidayat S.H., Harjosudarmo J., Sosromarsono S., (2006) Detection and host range study of virus associated with pepper yellow leaf curl disease. HAYATI Journal of Biosciences, 13, 1-6.
43. Tamura K., Dudley J., Nei M., Kumar S., (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular and Evolution, 24, 1596-1599. (Pubitemid 47236692)
44. Tenllado F., Llave C., Díaz-Ruíz J.R., (2004) RNA interference as a new biotechnological tool for the control of virus diseases in plants. Virus Research, 102, 85-96. (Pubitemid 38447253)
45. Tsai W.S., Shih S.L., Kenyon L., Green S.K., Jan F.-J., (2011) Temporal distribution and pathogenicity of the predominant tomato-infecting begomoviruses in Taiwan. Plant Pathology, doi: 10.1111/j.1365-3059.2011.02424.x
46. Varma A., Malathi, V.G., (2003) Emerging geminivirus problems: a serious threat to crop production. Annals of Applied Biology, 142, 145-164. (Pubitemid 36658678)
47. Yuan B., Latek R., Hossbach M., Tuschi T., Lewitter F., (2004) siRNA selection server: an automated siRNA oligonucleotide prediction server. Nucleic Acids Research, 32, W130-W134. (Pubitemid 38997314)
48. Zeidan M., Green S.K., Maxwell D.P., Nakhla M.K., Czosnek H., (1998) Molecular analysis of whitefly-transmitted tomato geminiviruses from Southeast and East Asia. Tropical Agriculture Research and Extension, 1, 107-115.