-
1
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL and Elkan C (1994). Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2: 28-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
2
-
-
0034527497
-
Aux/IAA proteins are phosphorylated by phytochrome in vitro
-
Colon-Carmona A, Chen DL, Yeh KC and Abel S (2000). Aux/IAA proteins are phosphorylated by phytochrome in vitro. Plant Physiol. 124: 1728-1738.
-
(2000)
Plant Physiol
, vol.124
, pp. 1728-1738
-
-
Colon-Carmona, A.1
Chen, D.L.2
Yeh, K.C.3
Abel, S.4
-
4
-
-
27744526218
-
AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana
-
Ellis CM, Nagpal P, Young JC, Hagen G, et al. (2005). AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development 132: 4563-4574.
-
(2005)
Development
, vol.132
, pp. 4563-4574
-
-
Ellis, C.M.1
Nagpal, P.2
Young, J.C.3
Hagen, G.4
-
5
-
-
33747486352
-
AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis
-
Goetz M, Vivian-Smith A, Johnson SD and Koltunow AM (2006). AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. Plant Cell 18: 1873-1886.
-
(2006)
Plant Cell
, vol.18
, pp. 1873-1886
-
-
Goetz, M.1
Vivian-Smith, A.2
Johnson, S.D.3
Koltunow, A.M.4
-
7
-
-
0035999463
-
Auxin-responsive gene expression: Genes, promoters and regulatory factors
-
Hagen G and Guilfoyle T (2002). Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol. Biol. 49: 373-385.
-
(2002)
Plant Mol. Biol
, vol.49
, pp. 373-385
-
-
Hagen, G.1
Guilfoyle, T.2
-
8
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT
-
Hall TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41: 95-98.
-
(1999)
Nucleic Acids Symp. Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
9
-
-
0032473570
-
The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development
-
Hardtke CS and Berleth T (1998). The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J. 17: 1405-1411.
-
(1998)
EMBO J
, vol.17
, pp. 1405-1411
-
-
Hardtke, C.S.1
Berleth, T.2
-
10
-
-
0034078213
-
The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue
-
Harper RM, Stowe-Evans EL, Luesse DR, Muto H, et al. (2000). The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue. Plant Cell 12: 757-770.
-
(2000)
Plant Cell
, vol.12
, pp. 757-770
-
-
Harper, R.M.1
Stowe-Evans, E.L.2
Luesse, D.R.3
Muto, H.4
-
11
-
-
70649085835
-
The genome of the cucumber, Cucumis sativus L
-
Huang S, Li R, Zhang Z, Li L, et al. (2009). The genome of the cucumber, Cucumis sativus L. Nat. Genet. 41: 1275-1281.
-
(2009)
Nat. Genet
, vol.41
, pp. 1275-1281
-
-
Huang, S.1
Li, R.2
Zhang, Z.3
Li, L.4
-
12
-
-
33748130065
-
Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis
-
Hunter C, Willmann MR, Wu G, Yoshikawa M, et al. (2006). Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis. Development 133: 2973-2981.
-
(2006)
Development
, vol.133
, pp. 2973-2981
-
-
Hunter, C.1
Willmann, M.R.2
Wu, G.3
Yoshikawa, M.4
-
14
-
-
79952983991
-
Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development
-
Kumar R, Tyagi AK and Sharma AK (2011). Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development. Mol. Genet. Genomics 285: 245-260.
-
(2011)
Mol. Genet. Genomics
, vol.285
, pp. 245-260
-
-
Kumar, R.1
Tyagi, A.K.2
Sharma, A.K.3
-
15
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
-
17
-
-
33646912733
-
A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis
-
Li J, Dai X and Zhao Y (2006). A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol. 140: 899-908.
-
(2006)
Plant Physiol
, vol.140
, pp. 899-908
-
-
Li, J.1
Dai, X.2
Zhao, Y.3
-
18
-
-
0035999460
-
Genetics of Aux/IAA and ARF action in plant growth and development
-
Liscum E and Reed JW (2002). Genetics of Aux/IAA and ARF action in plant growth and development. Plant Mol. Biol. 49: 387-400.
-
(2002)
Plant Mol. Biol
, vol.49
, pp. 387-400
-
-
Liscum, E.1
Reed, J.W.2
-
19
-
-
27144474564
-
Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation
-
Nagpal P, Ellis CM, Weber H, Ploense SE, et al. (2005). Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development 132: 4107-4118.
-
(2005)
Development
, vol.132
, pp. 4107-4118
-
-
Nagpal, P.1
Ellis, C.M.2
Weber, H.3
Ploense, S.E.4
-
20
-
-
0033792717
-
Auxin and ETTIN in Arabidopsis gynoecium morphogenesis
-
Nemhauser JL, Feldman LJ and Zambryski PC (2000). Auxin and ETTIN in Arabidopsis gynoecium morphogenesis. Development 127: 3877-3888.
-
(2000)
Development
, vol.127
, pp. 3877-3888
-
-
Nemhauser, J.L.1
Feldman, L.J.2
Zambryski, P.C.3
-
21
-
-
33645973556
-
The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning
-
Nishimura T, Wada T, Yamamoto KT and Okada K (2005). The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning. Plant Cell 17: 2940-2953.
-
(2005)
Plant Cell
, vol.17
, pp. 2940-2953
-
-
Nishimura, T.1
Wada, T.2
Yamamoto, K.T.3
Okada, K.4
-
22
-
-
20044394137
-
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: Unique and overlapping functions of ARF7 and ARF19
-
Okushima Y, Overvoorde PJ, Arima K, Alonso JM, et al. (2005). Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. Plant Cell 17: 444-463.
-
(2005)
Plant Cell
, vol.17
, pp. 444-463
-
-
Okushima, Y.1
Overvoorde, P.J.2
Arima, K.3
Alonso, J.M.4
-
23
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page RD (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357-358.
-
(1996)
Comput. Appl. Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.1
-
25
-
-
3543024524
-
Contrasting modes of diversification in the Aux/IAA and ARF gene families
-
Remington DL, Vision TJ, Guilfoyle TJ and Reed JW (2004). Contrasting modes of diversification in the Aux/IAA and ARF gene families. Plant Physiol. 135: 1738-1752.
-
(2004)
Plant Physiol
, vol.135
, pp. 1738-1752
-
-
Remington, D.L.1
Vision, T.J.2
Guilfoyle, T.J.3
Reed, J.W.4
-
26
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, et al. (2002). Prediction of plant microRNA targets. Cell 110: 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
-
27
-
-
32244447078
-
The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs
-
Schruff MC, Spielman M, Tiwari S, Adams S, et al. (2006). The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs. Development 133: 251-261.
-
(2006)
Development
, vol.133
, pp. 251-261
-
-
Schruff, M.C.1
Spielman, M.2
Tiwari, S.3
Adams, S.4
-
28
-
-
0030660640
-
ETTIN patterns the Arabidopsis floral meristem and reproductive organs
-
Sessions A, Nemhauser JL, McColl A, Roe JL, et al. (1997). ETTIN patterns the Arabidopsis floral meristem and reproductive organs. Development 124: 4481-4491.
-
(1997)
Development
, vol.124
, pp. 4481-4491
-
-
Sessions, A.1
Nemhauser, J.L.2
McColl, A.3
Roe, J.L.4
-
29
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
-
(2007)
Mol. Biol. Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
30
-
-
1042267600
-
MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana
-
Tatematsu K, Kumagai S, Muto H, Sato A, et al. (2004). MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana. Plant Cell 16: 379-393.
-
(2004)
Plant Cell
, vol.16
, pp. 379-393
-
-
Tatematsu, K.1
Kumagai, S.2
Muto, H.3
Sato, A.4
-
31
-
-
0034649673
-
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
-
Theologis A, Ecker JR, Palm CJ, Federspiel NA, et al. (2000). Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature 408: 816-820.
-
(2000)
Nature
, vol.408
, pp. 816-820
-
-
Theologis, A.1
Ecker, J.R.2
Palm, C.J.3
Federspiel, N.A.4
-
32
-
-
0033545881
-
Activation and repression of transcription by auxin-response factors
-
Ulmasov T, Hagen G and Guilfoyle TJ (1999). Activation and repression of transcription by auxin-response factors. Proc. Natl. Acad. Sci. U. S. A. 96: 5844-5849.
-
(1999)
Proc. Natl. Acad. Sci
, vol.96
, pp. 5844-5849
-
-
Ulmasov, T.1
Hagen, G.2
Guilfoyle, T.J.3
-
33
-
-
47749136250
-
Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2
-
Vert G, Walcher CL, Chory J and Nemhauser JL (2008). Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2. Proc. Natl. Acad. Sci. U. S. A. 105: 9829-9834.
-
(2008)
Proc. Natl. Acad. Sci
, vol.105
, pp. 9829-9834
-
-
Vert, G.1
Walcher, C.L.2
Chory, J.3
Nemhauser, J.L.4
-
34
-
-
34547781340
-
AMP1 and MP antagonistically regulate embryo and meristem development in Arabidopsis
-
Vidaurre DP, Ploense S, Krogan NT and Berleth T (2007). AMP1 and MP antagonistically regulate embryo and meristem development in Arabidopsis. Development 134: 2561-2567.
-
(2007)
Development
, vol.134
, pp. 2561-2567
-
-
Vidaurre, D.P.1
Ploense, S.2
Krogan, N.T.3
Berleth, T.4
-
35
-
-
34247102281
-
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)
-
Wang D, Pei K, Fu Y, Sun Z, et al. (2007). Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene 394: 13-24.
-
(2007)
Gene
, vol.394
, pp. 13-24
-
-
Wang, D.1
Pei, K.2
Fu, Y.3
Sun, Z.4
-
36
-
-
27744596243
-
Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis
-
Wang JW, Wang LJ, Mao YB, Cai WJ, et al. (2005). Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell 17: 2204-2216.
-
(2005)
Plant Cell
, vol.17
, pp. 2204-2216
-
-
Wang, J.W.1
Wang, L.J.2
Mao, Y.B.3
Cai, W.J.4
-
37
-
-
80053933347
-
Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum
-
Wu J, Wang F, Cheng L, Kong F, et al. (2011). Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum. Plant Cell Rep. 30: 2059-2073.
-
(2011)
Plant Cell Rep
, vol.30
, pp. 2059-2073
-
-
Wu, J.1
Wang, F.2
Cheng, L.3
Kong, F.4
-
38
-
-
79953725148
-
Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize
-
Xing H, Pudake RN, Guo G, Xing G, et al. (2011). Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize. BMC Genomics 12: 178.
-
(2011)
BMC Genomics
, vol.12
, pp. 178
-
-
Xing, H.1
Pudake, R.N.2
Guo, G.3
Xing, G.4
|