Concepts in Self-Assembly

Advanced Nanomaterials

Volumn 2, Issue , 2010, Pages 767-790

  Ramsden, Jeremy J ^a  

^a CRANFIELD UNIVERSITY   (United Kingdom)

Author keywords

Biological assembly; Cooperativity; Particle addition; Programmable self assembly; Self organization; Supramolecular chemistry; Thermodynamics

Indexed keywords

EID: 84885718590     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9783527628940.ch25     Document Type: Chapter

References (73)

1. Bray , A.J. (2002) Phase-ordering kinetics . Adv. Phys. , 51 , 481-587 .
2. Higgins , A.M. and Jones , R.A.L. (2000) Anisotropic spinodal dewetting as a route to self-assembly of patterned surfaces . Nature , 404 , 476-478 .
3. von Foerster , H. (1960) On self-organizing systems and their environments , in Self-Organizing Systems (eds M.C. Yorvitz and S. Cameron ), Pergamon Press , Oxford , pp. 31-50 .
4. Meakin , P. (1994) What do we know about DLA? Heterogen. Chem. Rev. , 1 , 99-102 .
5. Ashby , R.W. (1962) Principles of the self-organizing system , in Principles of Self-Organization (eds H. von Foerster and G.W. Zopf ), Pergamon Press , Oxford , pp. 255-278 .
6. Maruyama , K. , Nori , F. and Vedral , V. (2009) The physics of Maxwell ' s demon and information . Rev. Mod. Phys. , 81 , 1-23 .
7. Kellenberger , E. (1972) Assembly in biological systems , in Polymerization in Biological Systems , CIBA Foundation Symposium 7 (new series), Elsevier , Amsterdam .
8. Culver , G.M. (2003) Assembly of the 30S ribosomal subunit . Biopolymers , 68 , 234-249 .
9. Holy , T.E. and Leibler , S. (1994) Dynamic instability of microtubules as an efficient way to search in space . Proc. Natl Acad. Sci. USA , 91 , 5682-5685 .
10. Blumenfeld , L.A. (1981) Problems of Biological Physics , Springer , Berlin .
11. Frauenfelder , H. (1984) From atoms to biomolecules . Helv. Phys. Acta , 57 , 165-187 .
12. Ramsden , J.J. (2001) Biophysical chemistry , in Encyclopaedia of Chemical Physics and Physical Chemistry (eds J.H. Moore and N.D. Spencer ), IOP , Philadelphia, PA , pp. 2509-2544 .
13. Klavins , E. (2004) Directed self-assembly using graph grammars , in Foundations of Nanoscience: Self-Assembled Architectures and Devices , Snowbird, UT .
14. Klavins , E. (2004) Universal self-replication using graph grammars . International Conference on MEMs, NANOs and Smart Systems, Banff, Canada .
15. Klavins , E. , Ghrist , R. and Lipsky , D. (2004) Graph grammars for self-assembling robotic systems . Proceedings, International Conference on Robotics and Automation, New Orleans , pp. 5293-5300 .
16. Cacace , M.G. , Landau , E.M. and Ramsden , J.J. (1997) The Hofmeister series: salt and solvent effects on interfacial phenomena . Q. Rev. Biophys. , 30 , 241-278 .
17. Ramsden , J.J. and Máté, M. (1998) Kinetics of monolayer particle deposition . J. Chem. Soc., Faraday Trans. , 94 , 783-788 .
18. Schaaf , P. and Talbot , J. (1989) Surface exclusion effects in adsorption processes . J . Chem. Phys. , 91 , 4401-4409 .
19. Schaaf , P. , Voegel , J.-C. and Senger , B. (1998) Irreversible deposition/adsorption processes on solid surfaces . Ann. Phys. , 23 , 3-89 .
20. Ramsden , J.J. , Bachmanova , G.I. and Archakov , A.I. (1994) Kinetic evidence for protein clustering at a surface . Phys. Rev. E , 50 , 5072-5076 .
21. Meakin , P. and Family , F. (1988) Structure and kinetics of reaction-limited aggregation . Phys. Rev. A , 38 , 2110-2123 .
22. Lavalle , Ph. , DeVries , A.L. , Cheng , C.-H.C. , Scheuring , S. and Ramsden , J.J. (2000) Direct observation of postadsorption aggregration of antifreeze glycoproteins on silicates . Langmuir , 16 , 5785-5789 .
23. Luthi , P.O. , Ramsden , J.J. and Chopard , B. (1997) The role of diffusion in irreversible deposition . Phys. Rev. E , 55 , 3111-3115 .
24. Bafaluy , J. , Senger , B. , Voegel , J.C. and Schaaf , P. (1993) Effect of hydrodynamic interactions on the distribution of adhering Brownian particles . Phys. Rev. Lett. , 70 , 623-626 .
25. Bigelow , W.C. , Pickett , D.L. and Zisman , W.A. (1946) Oleophobic monolayers . J. Colloid Sci. , 1 , 513-538 .
26. Nuzzo , R.G. , Fusco , C.O. and Allara , D.L. (1987) Spontaneously organized molecular assemblies. 3. Proportion and properties of solution-adsorbed monolayers of organic disulfides at surfaces . J. Am. Chem. Soc. , 109 , 2358-2368 .
27. Sellers , H. , Ulman , A. , Shnidman , Y. and Eilers , J.E. (1993) Structure and binding of alkane thiolates on gold and silver surfaces . J. Am. Chem. Soc. , 115 , 9389-9401 .
28. Cooper , W. and Nuttall , W. (1915) The theory of wetting and the determination of the wetting power of dipping and spraying fluids containing a soap basis . J. Agric. Sci. , 7 , 219-239 .
29. Csúcs , G. and Ramsden , J.J. (1998) Interaction of phospholipid vesicles withsmooth metal oxide surfaces . Biochim. Biophys. Acta , 1369 , 61-70 .
30. Grosberg , A.Y. , Nguyen , T.T. and Shklovskii , B.I. (2002) The physics of charge inversion in chemical and biological systems . Rev. Mod. Phys. , 74 , 329-345 .
31. Ramsden , J.J. , Lvov , Y.A. and Decher , G. (1995) Optical and X-ray structural monitoring of molecular films assembled via alternate polyion adsorption . Thin Solid Films , 254 , 246-251 .
32. Ramsden , J.J. , Lvov , Y.A. and Decher , G. (1995) Optical and X-ray structural monitoring of molecular films assembledvia alternate polyion adsorption . Thin Solid Films , 261 , 343-344 .
33. Kitaigorodskii , A.I. (1961) Organic Chemical Crystallography , especially Chapters 3 and 4. Consultants Bureau , New York .
34. Winfree , E. (1996) On the computational power of DNA annealing and ligation , in DNA-Based Computers (eds R.J. Lipton and E.B. Baum ), American Mathematical Society , Princeton, NJ , pp. 199-221 .
35. Lehn , J.-M. (2000) Supramolecular polymer chemistry-scope and perspectives , in Supramolecular Polymers (ed. A. Ciferri ), Dekker , New York , pp. 615-641 .
36. Constable , E.C. , Hannon , M.J. , Edwards , A.J. and Raithby , P.R. (1994) Metallosupramolecular assembly of dinuclear double helicates incorporating a biphenyl-3,3 ′ diyl spacer . J. Chem. Soc., Dalton Trans. , 2669-2677 .
37. Fujita , M. , Ibukuro , F. , Hagihara , H. and Ogura , K. (1994) Quantitative selfassembly of a [2]catenane from two preformed molecular rings . Nature , 367 , 720-723 .
38. Desiraju , G.R. (1995) Supramolecular synthons in crystal engineering . Angew. Chem. Int. Ed. Engl. , 34 , 2311-2327 .
39. Kálmán , A. , Argay , G. , Fábián , L. et al. (2001) Basic forms of supramolecular self-assembly organized by parallel and antiparallel hydrogen bonds in the racemic crystal structures of six disubstituted and trisubstituted cyclopentane derivatives . Acta Crystallogr. , B57 , 539-550 .
40. Lackinger , M. , Griessl , S. , Heckl , W.M. et al. (2005) Self-assembly of trimesic acid at the liquid-solid interface-a study of solvent-induced polymorphism . Langmuir , 21 , 4984-4988 .
41. Barigelletti , F. , Flamigni , L. , Balzani , V. et al. (1994) Rigid rod-like dinuclear Ru(II)/Os(II) terpyridine-type complexes . J. Am. Chem. Soc. , 116 , 7692-7699 .
42. Whittell , G.R. and Manners , I. (2007) Metallopolymers: new multifunctional materials . Adv. Mater. , 19 , 3439-3468 .
43. Shchukin , V.A. and Bimberg , D. (1999) Spontaneous ordering of nanostructures on crystal surfaces . Rev. Mod. Phys. , 71 , 1125-1171 .
44. Bimberg , D. , Ledentsov , N.N. , Grundman , M. et al. (1996) InAs-GaAs quantum pyramid lasers . Jpn. J. Appl. Phys. , 35 , 1311-1319 .
45. Mamalis , A.G. , Markopoulos , A. and Manolakos , D.E. (2005) Micro and nanoprocessing techniques and applications . Nanotechnol. Percept. , 1 , 63-73 .
46. Rocco , M. , Infusini , E. , Daga , M.G. , Gogioso , L. and Cuniberti , C. (1987) Models of fibronectin . EMBO J. , 6 , 2343-2349 .
47. Pum , D. , Sára , M. , Schuster , B. and Sleytr , U.B. (2006) Bacterial surface layer proteins , in Nanotechnology: Science and Computation (eds J. Chen , N. Jonoska and G. Rozenberg ), Springer , Berlin , pp. 277-290 .
48. Schwarz , G. , Stankowski , S. and Rizzo , V. (1986) Thermodynamic analysis of incorporation and aggregation in a membrane . B iochim. Biophys. Acta , 861 , 141-151 .
49. Luthi , P.O. , Preiss , A. , Chopard , B. and Ramsden , J.J. (1998) A cellular automaton model for neurogenesis in Drosophila . Physica D , 118 , 151-160 .
50. Theraulaz , G. and Bonabeau , E. (1995) Coordination in distributed building . Science , 269 , 686-688 .
51. Ageno , M. (1967) Linee di ricerca in fisica biologica . Accad. Naz. Lincei , 102 , 3-58 .
52. Watson , J.D. and Crick , F.H.C. (1953) A structure for deoxyribose nucleic acid . Nature , 171 , 737-738 .
53. Watson , J.D. and Crick , F.H.C. (1953) Genetical implications of the structure of deoxyribonucleic acid . Nature , 171 , 964-967 .
54. Chumakov , S. , Belapurkar , C. , Putonti , C. et al. (2005) The theoretical basis of universal identification systems for bacteria and viruses . J. Biol. Phys. Chem. , 5 , 121-128 .
55. Seeman , N.C. (1982) Nucleic-acid junctions and lattices . J. Theor. Biol. , 99 , 237-247 .
56. Seeman , N.C. and Lukeman , P.S. (2005) Nucleic acid nanostructures: bottom-up control of geometry on the nanoscale . Rep. Prog. Phys. , 68 , 237-270 .
57. Goodman , R.P. , Schaap , I.A.T. , Tardin , C.F. et al. (2005) Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication . Science , 310 , 1661-1665 .
58. Rothemund , P.W.K. (2006) Folding DNA to create nanoscale shapes and patterns . Nature , 440 , 297-302 .
59. Högberg , B. and Olin , H. (2006) Programmable self-assembly-unique structures and bond uniqueness . J. Comput. Theor. Nanosci. , 3 , 391-397 .
60. Chen , J. , Jonoska , N. and Rozenberg , G. (eds) (2006) Nanotechnology: Science and Computation , Springer , Berlin .
61. Mirkin , C.A. , Letsinger , R.L. , Mucic , R.C. and Storhoff , J.J. (1996) A DNA-based method for rationally assembling nanoparticles into macroscopic materials . Nature , 382 , 607-609 .
62. Fernández , A. and Cendra , H. (1996) In vitro RNA folding: the principle of sequential minimization of entropy loss at work . Biophys. Chem. , 58 , 335-339 .
63. Sinanoǧlu , O. (1981) What size cluster is like a surface? Chem. Phys. Lett. , 81 , 188-190 .
64. Fernández , A. and Colubri , A. (1998) Microscopic dynamics from a coarsely defined solution to the protein folding problem . J . Math. Phys. , 39 , 3167-3187 .
65. Fernández , A. and Scott , R. (2003) Dehydron: a structurally encoded signal for protein interaction . Biophys. J. , 85 , 1914-1928 .
66. Ramsden , J.J. (2009) Nanotechnology , Ventus , Copenhagen .
67. Ying , J.Y. , Mehnert , C.P. and Wong , N.S. (1999) Synthesis and applications of supramolecular-templated mesoporous materials . A ngew. Chem. Int. Ed. Engl. , 38 , 57-77 .
68. Percec , V. , Glodde , M. , Bera , T.K. et al. (2002) Self-organization of supramolecular helical dendrimers into complex electronic materials . Nature , 417 , 384-387 .
69. Grill , L. , Dyer , M. , Lafferentz , L. et al. (2007) Nano-architectures by covalent assembly of molecular building blocks . Nat. Nanotechnol. , 2 , 687-691 .
70. Ramsden , J.J. (1987) The stability of superspheres . Proc. R. Soc. Lond. A , 413 , 407-414 .
71. Galam , S. and Mauger , A. (1996) Universal formulas for percolation thresholds . P hys. Rev. E , 53 , 2177-2181 .
72. Schwarz , G. (1970) Cooperative binding to linear biopolymers . Eur. J. Biochem , 12 , 442-453 .
73. Bishop , J. , Burden , S. , Klavins , E. , Kreisberg , R. , Malone , W. , Napp , N. and Nguyen , T. (2005) Programmable parts , in International Conference on Intelligent Robots and Systems , IEEE/RSJ Robotics and Automation Society .