Identification of microRNAs in Wool Follicles during Anagen, Catagen, and Telogen Phases in Tibetan Sheep

PLoS ONE

Volumn 8, Issue 10, 2013, Pages

  Liu, Guangbin ^a   Liu, Ruize ^a   Li, Qinqun ^a   Tang, Xiaohui ^b   Yu, Mei ^a   Li, Xinyun ^a   Cao, Jianhua ^a   Zhao, Shuhong ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b Tibet Agriculture and Animal Husbandry University   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 103 3P; MICRORNA 148B 3P; MICRORNA 20; MICRORNA 31 5P; MICRORNA 34; MICRORNA 39; MITOGEN ACTIVATED PROTEIN KINASE; UNCLASSIFIED DRUG; WNT PROTEIN;

ACTIN FILAMENT; ADULT; ADULT ANIMAL; ANIMAL TISSUE; ARTICLE; BIOINFORMATICS; CATAGEN; CONTROLLED STUDY; FOCAL ADHESION; GENE EXPRESSION; GENE TARGETING; GENETIC DATABASE; HAIR FOLLICLE; HAIR GROWTH; HUMAN; MIRBASE; MOLECULAR EVOLUTION; NONHUMAN; REGULATORY MECHANISM; RNA ANALYSIS; RNA SEQUENCE; SHEEP; TELOGEN; TIGHT JUNCTION; WNT SIGNALING PATHWAY; WOOL; WOOL FOLLICLE;

ANIMALS; BIOLOGICAL MARKERS; GENE EXPRESSION PROFILING; HAIR FOLLICLE; MICRORNAS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEQUENCE ANALYSIS, RNA; SHEEP; SKIN; WOOL;

EID: 84885718215     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0077801     Document Type: Article

References (51)

1. Ambros V, (2004) The functions of animal microRNAs. Nature 431: 350-355. doi:10.1038/nature02871. PubMed: 15372042.
2. Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB, (2003) Prediction of mammalian microRNA targets. Cell 115: 787-798. doi:10.1016/S0092-8674(03)01018-3. PubMed: 14697198.
3. Lee RC, Feinbaum RL, Ambros V, (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854. doi:10.1016/0092-8674(93)90529-Y. PubMed: 8252621.
4. Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297. doi:10.1016/S0092-8674(04)00045-5. PubMed: 14744438.
5. Rogers GE, (2006) Biology of the wool follicle: an excursion into a unique tissue interaction system waiting to be re-discovered. Exp Dermatol 15: 931-949. doi:10.1111/j.1600-0625.2006.00512.x. PubMed: 17083360.
6. Alonso L, Fuchs E, (2006) The hair cycle. J Cell Sci 119: 391-393. doi:10.1242/jcs02793. PubMed: 16443746.
7. Stenn KS, Paus R, (2001) Controls of hair follicle cycling. Physiol Rev 81: 449-494. PubMed: 11152763.
8. Greco V, Chen T, Rendl M, Schober M, Pasolli HA, et al. (2009) A two-step mechanism for stem cell activation during hair regeneration. Cell Stem Cell 4: 155-169. doi:10.1016/j.stem.2008.12.009. PubMed: 19200804.
9. Van Mater D, Kolligs FT, Dlugosz AA, Fearon ER, (2003) Transient activation of β-catenin signaling in cutaneous keratinocytes is sufficient to trigger the active growth phase of the hair cycle in mice. Genes Dev 17: 1219-1224. doi:10.1101/gad.1076103. PubMed: 12756226.
10. Sick S, Reinker S, Timmer J, Schlake T, (2006) WNT and DKK determine hair follicle spacing through a reaction-diffusion mechanism. Sci Signal 314: 1447-1450. PubMed: 17082421.
11. Mardaryev AN, Ahmed MI, Vlahov NV, Fessing MY, Gill JH, et al. (2010) Micro-RNA-31 controls hair cycle-associated changes in gene expression programs of the skin and hair follicle. FASEB J 24: 3869-3881. doi:10.1096/fj.10-160663. PubMed: 20522784.
12. Foitzik K, Lindner G, Mueller-Roever S, Maurer M, BOTCHKAREVA N, et al. (2000) Control of murine hair follicle regression (catagen) by TGF-β1 in vivo. FASEB J 14: 752-760. PubMed: 10744631.
13. Zhou P, Byrne C, Jacobs J, Fuchs E, (1995) Lymphoid enhancer factor 1 directs hair follicle patterning and epithelial cell fate. Genes Dev 9: 700-713. doi:10.1101/gad.9.6.700. PubMed: 7537238.
14. Wu Z, Sun H, Zeng W, He J, Mao X, (2012) Upregulation of MircoRNA-370 Induces Proliferation in Human Prostate Cancer Cells by Downregulating the Transcription Factor FOXO1. PLOS ONE 7: e45825. doi:10.1371/journal.pone.0045825. PubMed: 23029264.
15. Wu N, Sulpice E, Obeid P, Benzina S, Kermarrec F, et al. (2012) The miR-17 Family Links p63 Protein to MAPK Signaling to Promote the Onset of Human Keratinocyte Differentiation. PLOS ONE 7: e45761. doi:10.1371/journal.pone.0045761. PubMed: 23029228.
16. Ning MS, Andl T, (2012) Control by a hair's breadth: the role of microRNAs in the skin. Cell Mol Life Sci: pp. 1-21.
17. Yang L, Boldin MP, Yu Y, Liu CS, Ea CK, et al. (2012) miR-146a controls the resolution of T cell responses in mice. J Exp Med 209: 1655-1670. doi:10.1084/jem.20112218. PubMed: 22891274.
18. Rusca N, Monticelli S, (2011) MiR-146a in immunity and disease. Molecular. Biol Int: pp. 2011.
19. Iyer A, Zurolo E, Prabowo A, Fluiter K, Spliet WGM, et al. (2012) MicroRNA-146a: A Key Regulator of Astrocyte-Mediated Inflammatory Response. PLOS ONE 7: e44789. doi:10.1371/journal.pone.0044789. PubMed: 23028621.
20. He Y, Huang C, Sun X, Long X, Lv X, et al. (2012) MicroRNA-146a modulates TGF-beta1-induced hepatic stellate cells proliferation by targeting SMAD4. Cell Signal.
21. Hung PS, Chen FC, Kuang SH, Kao SY, Lin SC, et al. (2010) miR-146a induces differentiation of periodontal ligament cells. J Dent Res 89: 252-257. doi:10.1177/0022034509357411. PubMed: 20110513.
22. Aubin-Houzelstein G, (2012) Notch Signaling and the Developing Hair Follicle. Notch Signal Embryol Cancer, 727: 142-160. PubMed: 22399345.
23. Lin HY, Kao CH, Lin KMC, Kaartinen V, Yang LT, (2011) Notch signaling regulates late-stage epidermal differentiation and maintains postnatal hair cycle homeostasis. PLOS ONE 6: e15842. doi:10.1371/journal.pone.0015842. PubMed: 21267458.
24. Park PJ, Moon BS, Lee SH, Kim SN, Kim AR, et al. (2012) Hair growth-promoting effect of< i> Aconiti Ciliare Tuber extract mediated by the activation of Wnt/β-catenin signaling. Life Sci.
25. Huelsken J, Vogel R, Erdmann B, Cotsarelis G, Birchmeier W, (2001) beta-Catenin controls hair follicle morphogenesis and stem cell differentiation in the skin. Cell 105: 533-545. doi:10.1016/S0092-8674(01)00336-1. PubMed: 11371349.
26. Merrill BJ, Gat U, DasGupta R, Fuchs E, (2001) Tcf3 and Lef1 regulate lineage differentiation of multipotent stem cells in skin. Genes Dev 15: 1688-1705. doi:10.1101/gad.891401. PubMed: 11445543.
27. Andl T, Reddy ST, Gaddapara T, Millar SE, (2002) WNT signals are required for the initiation of hair follicle development. Dev Cell 2: 643-653. doi:10.1016/S1534-5807(02)00167-3. PubMed: 12015971.
28. Niemann C, Owens DM, Hülsken J, Birchmeier W, Watt FM, (2002) Expression of ΔNLef1 in mouse epidermis results in differentiation of hair follicles into squamous epidermal cysts and formation of skin tumours. Development 129: 95-109. PubMed: 11782404.
29. Zhang Y, Andl T, Yang SH, Teta M, Liu F, et al. (2008) Activation of β-catenin signaling programs embryonic epidermis to hair follicle fate. Development 135: 2161-2172. doi:10.1242/dev.017459. PubMed: 18480165.
30. Petersson M, Brylka H, Kraus A, John S, Rappl G, et al. (2011) TCF/Lef1 activity controls establishment of diverse stem and progenitor cell compartments in mouse epidermis. EMBO J 30: 3004-3018. doi:10.1038/emboj.2011.199. PubMed: 21694721.
31. Celso CL, Prowse DM, Watt FM, (2004) Transient activation of β-catenin signalling in adult mouse epidermis is sufficient to induce new hair follicles but continuous activation is required to maintain hair follicle tumours. Development 131: 1787-1799. doi:10.1242/dev.01052. PubMed: 15084463.
32. Yang GH, Wang F, Yu J, Wang XS, Yuan JY, et al. (2009) MicroRNAs are involved in erythroid differentiation control. J Cell Biochem 107: 548-556. doi:10.1002/jcb.22156. PubMed: 19350553.
33. Moncini S, Salvi A, Zuccotti P, Viero G, Quattrone A, et al. (2011) The role of miR-103 and miR-107 in regulation of CDK5R1 expression and in cellular migration. PLOS ONE 6: e20038. doi:10.1371/journal.pone.0020038. PubMed: 21625387.
34. Schoolmeesters A, Eklund T, Leake D, Vermeulen A, Smith Q, et al. (2009) Functional profiling reveals critical role for miRNA in differentiation of human mesenchymal stem cells. PLOS ONE 4: e5605. doi:10.1371/journal.pone.0005605. PubMed: 19440384.
35. Guo SL, Peng Z, Yang X, Fan KJ, Ye H, et al. (2011) miR-148a promoted cell proliferation by targeting p27 in gastric cancer cells. Int J Biol Sciences 7: 567-574. PubMed: 21552422.
36. Kukreja RC, Yin C, Salloum FN, (2011) MicroRNAs: new players in cardiac injury and protection. Mol Pharmacol 80: 558-564. doi:10.1124/mol.111.073528. PubMed: 21737570.
37. Duan H, Jiang Y, Zhang H, Wu Y, (2010) MiR-320 and miR-494 affect cell cycles of primary murine bronchial epithelial cells exposed to benzo [a] pyrene. Toxicol Vitro 24: 928-935. doi:10.1016/j.tiv.2009.11.013.
38. Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, et al. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol 26: 407-415. doi:10.1038/nbt1394. PubMed: 18392026.
39. Kozomara A, Griffiths-Jones S, (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-D157. doi:10.1093/nar/gkr817. PubMed: 21037258.
40. Griffiths-Jones S, Saini HK, Van Dongen S, Enright AJ, (2008) miRBase: tools for microRNA genomics. Nucleic Acids Res 36: D154-D158. doi:10.1093/nar/gkn221. PubMed: 17991681.
41. Griffiths-Jones S, Grocock RJ, Van Dongen S, Bateman A, Enright AJ, (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34: D140-D144. doi:10.1093/nar/gkj430. PubMed: 16381832.
42. Griffiths-Jones S, (2004) The microRNA registry. Nucleic Acids Res 32: D109-D111. doi:10.1093/nar/gnh093. PubMed: 14681370.
43. Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, et al. (2003) A uniform system for microRNA annotation. Rna 9: 277-279. doi:10.1261/rna.2183803. PubMed: 12592000.
44. LivestockGenomics,. Available: http://www.livestockgenomics.csiro.au. Accessed 2013 September 17.
45. Audic S, Claverie JM, (1997) The significance of digital gene expression profiles. Genome Res 7: 986-995. PubMed: 9331369.
46. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, et al. (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33: e179-e179. doi:10.1093/nar/gni178. PubMed: 16314309.
47. - ΔΔCT Method. Methods 25: 402-408. doi:10.1006/meth.2001.1262. PubMed: 11846609.
48. Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R, (2004) Fast and effective prediction of microRNA/target duplexes. Rna 10: 1507-1517. doi:10.1261/rna.5248604. PubMed: 15383676.
49. ENSEMBEL. Available: http://asia.ensembl.org/index.html. Accessed 2013 September 17.
50. Da Wei Huang BTS, Lempicki RA, (2008) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57. doi:10.1038/nprot.2008.211. PubMed: 19131956.
51. Sherman BT, Lempicki RA, (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37: 1-13. doi:10.1093/nar/gkp505. PubMed: 19033363.