-
1
-
-
84856074887
-
Action of SN 28049, a new DNA binding topoisomerase II-directed antitumour drug: Comparison with doxorubicin and etoposide
-
2-s2.0-84856074887
-
Drummond C. J., Finlay G. J., Broome L., Marshall E. S., Richardson E., Baguley B. C., Action of SN 28049, a new DNA binding topoisomerase II-directed antitumour drug: comparison with doxorubicin and etoposide. Investigational New Drugs 2011 29 5 1102 1110 2-s2.0-84856074887
-
(2011)
Investigational New Drugs
, vol.29
, Issue.5
, pp. 1102-1110
-
-
Drummond, C.J.1
Finlay, G.J.2
Broome, L.3
Marshall, E.S.4
Richardson, E.5
Baguley, B.C.6
-
2
-
-
79960049215
-
From DNA binding to metabolic control: Integration of-omics data reveals drug targets for prostate cancer
-
2-s2.0-79960049215 10.1038/emboj.2011.205
-
Gao H., Dahlman-Wright K., From DNA binding to metabolic control: integration of-omics data reveals drug targets for prostate cancer. EMBO Journal 2011 30 13 2516 2517 2-s2.0-79960049215 10.1038/emboj.2011.205
-
(2011)
EMBO Journal
, vol.30
, Issue.13
, pp. 2516-2517
-
-
Gao, H.1
Dahlman-Wright, K.2
-
3
-
-
84864341760
-
Phenanthriplatin, a monofunctional DNA-binding platinum anticancer drug candidate with unusual potency and cellular activity profile
-
10.1073/pnas.1207670109
-
Park G. Y., Wilson J. J., Song Y., Lippard S. J., Phenanthriplatin, a monofunctional DNA-binding platinum anticancer drug candidate with unusual potency and cellular activity profile. Proceedings of the National Academy of Sciences of the United States of America 2012 109 30 11987 11992 10.1073/pnas.1207670109
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, Issue.30
, pp. 11987-11992
-
-
Park, G.Y.1
Wilson, J.J.2
Song, Y.3
Lippard, S.J.4
-
4
-
-
77955034560
-
Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function
-
2-s2.0-77955034560 10.1093/bioinformatics/btq295 btq295
-
Zhao H., Yang Y., Zhou Y., Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function. Bioinformatics 2010 26 15 1857 1863 2-s2.0-77955034560 10.1093/bioinformatics/btq295 btq295
-
(2010)
Bioinformatics
, vol.26
, Issue.15
, pp. 1857-1863
-
-
Zhao, H.1
Yang, Y.2
Zhou, Y.3
-
5
-
-
1542400269
-
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information
-
DOI 10.1093/bioinformatics/btg432
-
Ahmad S., Gromiha M. M., Sarai A., Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information. Bioinformatics 2004 20 4 477 486 2-s2.0-1542400269 10.1093/bioinformatics/btg432 (Pubitemid 38344327)
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 477-486
-
-
Ahmad, S.1
Gromiha, M.M.2
Sarai, A.3
-
6
-
-
14644405023
-
A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction
-
McLaughlin W. A., Kulp D. W., de la Cruz J., Lu X., Lawson C. L., Berman H. M., A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction. Journal of Structural and Functional Genomics 2005 5 4 255 265 2-s2.0-14644405023 (Pubitemid 40311608)
-
(2004)
Journal of Structural and Functional Genomics
, vol.5
, Issue.4
, pp. 255-265
-
-
McLaughlin, W.A.1
Kulp, D.W.2
De La Cruz, J.3
Lu, X.-J.4
Lawson, C.L.5
Berman, H.M.6
-
7
-
-
62649160355
-
Identification of DNA-binding proteins using structural, electrostatic and evolutionary features
-
2-s2.0-62649160355 10.1016/j.jmb.2009.02.023
-
Nimrod G., Szilágyi A., Leslie C., Ben-Tal N., Identification of DNA-binding proteins using structural, electrostatic and evolutionary features. Journal of Molecular Biology 2009 387 4 1040 1053 2-s2.0-62649160355 10.1016/j.jmb.2009.02.023
-
(2009)
Journal of Molecular Biology
, vol.387
, Issue.4
, pp. 1040-1053
-
-
Nimrod, G.1
Szilágyi, A.2
Leslie, C.3
Ben-Tal, N.4
-
8
-
-
85040706796
-
Prediction of DNA-binding proteins from relational features
-
10.1186/1477-5956-10-66
-
Szaboova A., Kuzelka O., Zelezny F., Tolar J., Prediction of DNA-binding proteins from relational features. Proteome Science 2012 10 1, article 66 10.1186/1477-5956-10-66
-
(2012)
Proteome Science
, vol.10
-
-
Szaboova, A.1
Kuzelka, O.2
Zelezny, F.3
Tolar, J.4
-
9
-
-
29144504328
-
Kernel-based machine learning protocol for predicting DNA-binding proteins
-
DOI 10.1093/nar/gki949
-
Bhardwaj N., Langlois R. E., Zhao G., Lu H., Kernel-based machine learning protocol for predicting DNA-binding proteins. Nucleic Acids Research 2005 33 20 6486 6493 2-s2.0-29144504328 10.1093/nar/gki949 (Pubitemid 41806412)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.20
, pp. 6486-6493
-
-
Bhardwaj, N.1
Langlois, R.E.2
Zhao, G.3
Lu, H.4
-
10
-
-
0038644483
-
Support vector machines for predicting rRNA-, RNA-, and DNA-binding proteins from amino acid sequence
-
DOI 10.1016/S1570-9639(03)00112-2
-
Cai Y. D., Lin S. L., Support vector machines for predicting rRNA-, RNA-, and DNA-binding proteins from amino acid sequence. Biochimica et Biophysica Acta 2003 1648 1-2 127 133 2-s2.0-0038644483 10.1016/S1570-9639(03)00112-2 (Pubitemid 38234614)
-
(2003)
Biochimica et Biophysica Acta - Proteins and Proteomics
, vol.1648
, Issue.1-2
, pp. 127-133
-
-
Cai, Y.-D.1
Lin, S.L.2
-
11
-
-
33646510075
-
Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines
-
2-s2.0-33646510075 10.1016/j.jtbi.2005.09.018
-
Yu X., Cao J., Cai Y., Shi T., Li Y., Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines. Journal of Theoretical Biology 2006 240 2 175 184 2-s2.0-33646510075 10.1016/j.jtbi.2005.09.018
-
(2006)
Journal of Theoretical Biology
, vol.240
, Issue.2
, pp. 175-184
-
-
Yu, X.1
Cao, J.2
Cai, Y.3
Shi, T.4
Li, Y.5
-
12
-
-
38649127567
-
Identification of DNA-binding proteins using support vector machines and evolutionary profiles
-
DOI 10.1186/1471-2105-8-463
-
Kumar M., Gromiha M. M., Raghava G. P. S., Identification of DNA-binding proteins using support vector machines and evolutionary profiles. BMC Bioinformatics 2007 8 article 463 2-s2.0-38649127567 10.1186/1471-2105-8-463 (Pubitemid 351168200)
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 463
-
-
Kumar, M.1
Gromiha, M.M.2
Raghava, G.P.S.3
-
13
-
-
64749100837
-
Predicting DNA- and RNA-binding proteins from sequences with kernel methods
-
2-s2.0-64749100837 10.1016/j.jtbi.2009.01.024
-
Shao X., Tian Y., Wu L., Wang Y., Jing L., Deng N., Predicting DNA- and RNA-binding proteins from sequences with kernel methods. Journal of Theoretical Biology 2009 258 2 289 293 2-s2.0-64749100837 10.1016/j.jtbi.2009.01.024
-
(2009)
Journal of Theoretical Biology
, vol.258
, Issue.2
, pp. 289-293
-
-
Shao, X.1
Tian, Y.2
Wu, L.3
Wang, Y.4
Jing, L.5
Deng, N.6
-
14
-
-
78649340206
-
Binary classification of uncharacterized proteins into DNA binding/non-DNA binding proteins from sequence derived features using ANN
-
2-s2.0-78649340206
-
Patel A. K., Patel S., Naik P. K., Binary classification of uncharacterized proteins into DNA binding/non-DNA binding proteins from sequence derived features using ANN. Digest Journal of Nanomaterials and Biostructures 2009 4 4 775 782 2-s2.0-78649340206
-
(2009)
Digest Journal of Nanomaterials and Biostructures
, vol.4
, Issue.4
, pp. 775-782
-
-
Patel, A.K.1
Patel, S.2
Naik, P.K.3
-
15
-
-
67249090413
-
DNA-prot: Identification of DNA binding proteins from protein sequence information using random forest
-
2-s2.0-67249090413
-
Kumar K. K., Pugalenthi G., Suganthan P. N., DNA-prot: identification of DNA binding proteins from protein sequence information using random forest. Journal of Biomolecular Structure and Dynamics 2009 26 6 679 686 2-s2.0-67249090413
-
(2009)
Journal of Biomolecular Structure and Dynamics
, vol.26
, Issue.6
, pp. 679-686
-
-
Kumar, K.K.1
Pugalenthi, G.2
Suganthan, P.N.3
-
16
-
-
80052855771
-
IDNA-prot: Identification of DNA binding proteins using random forest with grey model
-
2-s2.0-80052855771 10.1371/journal.pone.0024756 e24756
-
Lin W. Z., Fang J. A., Xiao X., Chou K. C., iDNA-prot: identification of DNA binding proteins using random forest with grey model. PLoS ONE 2011 6 9 2-s2.0-80052855771 10.1371/journal.pone.0024756 e24756
-
(2011)
PLoS ONE
, vol.6
, Issue.9
-
-
Lin, W.Z.1
Fang, J.A.2
Xiao, X.3
Chou, K.C.4
-
17
-
-
84880480444
-
Sequence-based prediction of DNA-binding residues in proteins with conservation and correlation information
-
Ma X., Guo J., Liu H. D., Xie J. M., Sun X., Sequence-based prediction of DNA-binding residues in proteins with conservation and correlation information. IEEE Transactions on Computational Biology and Bioinformatics 2012 9 6 1766 1775
-
(2012)
IEEE Transactions on Computational Biology and Bioinformatics
, vol.9
, Issue.6
, pp. 1766-1775
-
-
Ma, X.1
Guo, J.2
Liu, H.D.3
Xie, J.M.4
Sun, X.5
-
18
-
-
84860833500
-
Reorganizing the protein space at the universal protein resource (UniProt)
-
10.1093/nar/gkr981
-
Consortium T. U., Reorganizing the protein space at the universal protein resource (UniProt). Nucleic Acids Research 2012 40 1 D71 D75 10.1093/nar/gkr981
-
(2012)
Nucleic Acids Research
, vol.40
, Issue.1
-
-
Consortium, T.U.1
-
19
-
-
4143064791
-
Moment-based prediction of DNA-binding proteins
-
DOI 10.1016/j.jmb.2004.05.058, PII S0022283604006382
-
Ahmad S., Sarai A., Moment-based prediction of DNA-binding proteins. Journal of Molecular Biology 2004 341 1 65 71 2-s2.0-4143064791 10.1016/j.jmb.2004.05.058 (Pubitemid 39090635)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.1
, pp. 65-71
-
-
Ahmad, S.1
Sarai, A.2
-
20
-
-
80053523101
-
Prediction of RNA-binding proteins by voting systems
-
2-s2.0-80053523101 10.1155/2011/506205 506205
-
Peng C. R., Liu L., Niu B., Lv Y. L., Li M. J., Yuan Y. L., Zhu Y. B., Lu W. C., Cai Y. D., Prediction of RNA-binding proteins by voting systems. Journal of Biomedicine and Biotechnology 2011 2011 8 2-s2.0-80053523101 10.1155/2011/506205 506205
-
(2011)
Journal of Biomedicine and Biotechnology
, vol.2011
, pp. 8
-
-
Peng, C.R.1
Liu, L.2
Niu, B.3
Lv, Y.L.4
Li, M.J.5
Yuan, Y.L.6
Zhu, Y.B.7
Lu, W.C.8
Cai, Y.D.9
-
21
-
-
0035023445
-
Predicting protein-protein interactions from primary structure
-
Bock J. R., Gough D. A., Predicting protein-protein interactions from primary structure. Bioinformatics 2001 17 5 455 460 2-s2.0-0035023445 (Pubitemid 32440306)
-
(2001)
Bioinformatics
, vol.17
, Issue.5
, pp. 455-460
-
-
Bock, J.R.1
Gough, D.A.2
-
22
-
-
0035014847
-
Multi-class protein fold recognition using support vector machines and neural networks
-
Ding C. H. Q., Dubchak I., Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics 2001 17 4 349 358 2-s2.0-0035014847 (Pubitemid 32421929)
-
(2001)
Bioinformatics
, vol.17
, Issue.4
, pp. 349-358
-
-
Ding, C.H.Q.1
Dubchak, I.2
-
23
-
-
0042622243
-
SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence
-
DOI 10.1093/nar/gkg600
-
Cai C. Z., Han L. Y., Ji Z. L., Chen X., Chen Y. Z., SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Research 2003 31 13 3692 3697 2-s2.0-0042622243 10.1093/nar/gkg600 (Pubitemid 37442225)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3692-3697
-
-
Cai, C.Z.1
Han, L.Y.2
Ji, Z.L.3
Chen, X.4
Chen, Y.Z.5
-
24
-
-
25444524842
-
PSSM-based prediction of DNA binding sites in proteins
-
DOI 10.1186/1471-2105-6-33
-
Ahmad S., Sarai A., PSSM-based prediction of DNA binding sites in proteins. BMC Bioinformatics 2005 6 article 33 2-s2.0-25444524842 10.1186/1471-2105-6-33 (Pubitemid 41357981)
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 33
-
-
Ahmad, S.1
Sarai, A.2
-
25
-
-
34447293576
-
Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method
-
DOI 10.1016/j.biosystems.2006.08.007, PII S0303264706001493
-
Ho S. Y., Yu F. C., Chang C. Y., Huang H. L., Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method. BioSystems 2007 90 1 234 241 2-s2.0-34447293576 10.1016/j.biosystems.2006.08.007 (Pubitemid 47039274)
-
(2007)
BioSystems
, vol.90
, Issue.1
, pp. 234-241
-
-
Ho, S.-Y.1
Yu, F.-C.2
Chang, C.-Y.3
Huang, H.-L.4
-
26
-
-
67650539034
-
Prediction of DNA-binding residues from protein sequence information using random forests
-
supplement 1, article S1 2-s2.0-67650539034 10.1186/1471-2164-10-S1-S1
-
Wang L., Yang M. Q., Yang J. Y., Prediction of DNA-binding residues from protein sequence information using random forests. BMC Genomics 2009 10 supplement 1, article S1 2-s2.0-67650539034 10.1186/1471-2164-10-S1-S1
-
(2009)
BMC Genomics
, vol.10
-
-
Wang, L.1
Yang, M.Q.2
Yang, J.Y.3
-
27
-
-
58049220320
-
Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature
-
2-s2.0-58049220320 10.1093/bioinformatics/btn583
-
Wu J., Liu H., Duan X., Ding Y., Wu H., Bai Y., Sun X., Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature. Bioinformatics 2009 25 1 30 35 2-s2.0-58049220320 10.1093/bioinformatics/btn583
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 30-35
-
-
Wu, J.1
Liu, H.2
Duan, X.3
Ding, Y.4
Wu, H.5
Bai, Y.6
Sun, X.7
-
28
-
-
70450174824
-
A SVM-based approach for predicting DNA-binding residues in proteins from amino acid sequences
-
Ma X., Wu J., Liu H., Yang X., Xie J., Sun X., A SVM-based approach for predicting DNA-binding residues in proteins from amino acid sequences. Proceedings of the International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing (IJCBS '09) August 2009 Shanghai, China 225 229 2-s2.0-70450174824 10.1109/IJCBS.2009.33
-
Proceedings of the International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing (IJCBS '09) August 2009 Shanghai, China 2-s2.0-70450174824 10.1109/IJCBS.2009.33
, pp. 225-229
-
-
Ma, X.1
Wu, J.2
Liu, H.3
Yang, X.4
Xie, J.5
Sun, X.6
-
29
-
-
77953886400
-
BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features
-
supplement 1, article S3 2-s2.0-77953886400 10.1186/1752-0509-4-S1-S3
-
Wang L., Huang C., Yang M. Q., Yang J. Y., BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. BMC Systems Biology 2010 4 supplement 1, article S3 2-s2.0-77953886400 10.1186/1752-0509-4- S1-S3
-
(2010)
BMC Systems Biology
, vol.4
-
-
Wang, L.1
Huang, C.2
Yang, M.Q.3
Yang, J.Y.4
-
30
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 1997 25 17 3389 3402 2-s2.0-0030801002 10.1093/nar/25.17.3389 (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
31
-
-
0004322632
-
Sequential minimal optimization: A fast algorithm for training support vector machine
-
Platt J. C., Sequential minimal optimization: a fast algorithm for training support vector machine. Microsoft Research, Technical Report 1998 MSR-TR-98-14
-
(1998)
Microsoft Research, Technical Report
, Issue.MSR-TR-98-14
-
-
Platt, J.C.1
-
32
-
-
21244500957
-
Logistic model trees
-
DOI 10.1007/s10994-005-0466-3
-
Landwehr N., Hall M., Frank E., Logistic model trees. Machine Learning 2005 59 1-2 161 205 2-s2.0-21244500957 10.1007/s10994-005-0466-3 (Pubitemid 40890416)
-
(2005)
Machine Learning
, vol.59
, Issue.1-2
, pp. 161-205
-
-
Landwehr, N.1
Hall, M.2
Frank, E.3
-
33
-
-
0035478854
-
Random forests
-
DOI 10.1023/A:1010933404324
-
Breiman L., Random forests. Machine Learning 2001 45 1 5 32 2-s2.0-0035478854 10.1023/A:1010933404324 (Pubitemid 32933532)
-
(2001)
Machine Learning
, vol.45
, Issue.1
, pp. 5-32
-
-
Breiman, L.1
-
34
-
-
0031269184
-
On the Optimality of the Simple Bayesian Classifier under Zero-One Loss
-
Domingos P., Pazzani M., On the optimality of the simple Bayesian classifier under zero-one loss. Machine Learning 1997 29 2-3 103 130 2-s2.0-0031269184 (Pubitemid 127510035)
-
(1997)
Machine Learning
, vol.29
, Issue.2-3
, pp. 103-130
-
-
Domingos, P.1
Pazzani, M.2
-
37
-
-
76749092270
-
The WEKA data mining software: An update
-
10.1145/1656274.1656278
-
Hall M., Frank E., Holmes G., Pfahringer B., Reutemann P., Witten I. H., The WEKA data mining software: an update. SIGKDD Explorations 2009 11 1 10 18 10.1145/1656274.1656278
-
(2009)
SIGKDD Explorations
, vol.11
, Issue.1
, pp. 10-18
-
-
Hall, M.1
Frank, E.2
Holmes, G.3
Pfahringer, B.4
Reutemann, P.5
Witten, I.H.6
-
38
-
-
79960109313
-
Nuclear magnetic resonance analysis of protein-DNA interactions
-
2-s2.0-79960109313 10.1098/rsif.2010.0543
-
Campagne S., Gervais V., Milon A., Nuclear magnetic resonance analysis of protein-DNA interactions. Journal of the Royal Society Interface 2011 8 61 1065 1078 2-s2.0-79960109313 10.1098/rsif.2010.0543
-
(2011)
Journal of the Royal Society Interface
, vol.8
, Issue.61
, pp. 1065-1078
-
-
Campagne, S.1
Gervais, V.2
Milon, A.3
|