-
1
-
-
0035931866
-
Life in extreme environments
-
Rothschild, L.J. and Mancinelli, R.L. (2001) Life in extreme environments. Nature, 409, 1092-1101.
-
(2001)
Nature
, vol.409
, pp. 1092-1101
-
-
Rothschild, L.J.1
Mancinelli, R.L.2
-
2
-
-
9344261804
-
Stress and how bacteria cope with death and survival
-
Aertsen, A. and Michiels, C.W. (2004) Stress and how bacteria cope with death and survival. Crit. Rev. Microbiol., 30, 263-273.
-
(2004)
Crit. Rev. Microbiol.
, vol.30
, pp. 263-273
-
-
Aertsen, A.1
Michiels, C.W.2
-
3
-
-
19944405112
-
Diversify or die: generation of diversity in response to stress
-
Aertsen, A. and Michiels, C.W. (2005) Diversify or die: generation of diversity in response to stress. Crit. Rev. Microbiol., 31, 69-78.
-
(2005)
Crit. Rev. Microbiol.
, vol.31
, pp. 69-78
-
-
Aertsen, A.1
Michiels, C.W.2
-
4
-
-
0032715175
-
Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
-
Kuzminov, A. (1999) Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol. Mol. Biol. Rev., 63, 751-813.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 751-813
-
-
Kuzminov, A.1
-
5
-
-
0036714331
-
Signal transduction and regulation mechanisms involved in control of the sS (RpoS) subunit of RNA polymerase
-
Hengge-Aronis, R. (2002) Signal transduction and regulation mechanisms involved in control of the sS (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev., 66, 373-395.
-
(2002)
Microbiol. Mol. Biol. Rev.
, vol.66
, pp. 373-395
-
-
Hengge-aronis, R.1
-
6
-
-
0029608870
-
The significance of bacteria in stationary phase to food microbiology
-
Rees, C.E.D., Dodd, C.E.R., Gibson, P.T., Booth, I.R., and Stewart, G.S.A.B. (1995) The significance of bacteria in stationary phase to food microbiology. Int. J. Food Microbiol., 28, 263-275.
-
(1995)
Int. J. Food Microbiol.
, vol.28
, pp. 263-275
-
-
Rees, C.E.D.1
Dodd, C.E.R.2
Gibson, P.T.3
Booth, I.R.4
Stewart, G.S.A.B.5
-
7
-
-
0038180232
-
The bacteria strike back
-
April, 8-11.
-
Booth, I.R. (1998) The bacteria strike back. Biochemist, April, 8-11.
-
(1998)
Biochemist
-
-
Booth, I.R.1
-
8
-
-
0029151682
-
The stationary phase sigma factor sS (RpoS) is required for a sustained acid tolerance response in virulent Salmonella typhimurium
-
Lee, I.S., Lin, J., Hall, H.K., Bearson, B., and Foster, J.W. (1995) The stationary phase sigma factor sS (RpoS) is required for a sustained acid tolerance response in virulent Salmonella typhimurium. Mol. Microbiol., 17, 155-167.
-
(1995)
Mol. Microbiol.
, vol.17
, pp. 155-167
-
-
Lee, I.S.1
Lin, J.2
Hall, H.K.3
Bearson, B.4
Foster, J.W.5
-
9
-
-
0029608869
-
Physiology of the osmotic stress response in microorganisms
-
Gutierrez, C., Abee, T., and Booth, I.R. (1995) Physiology of the osmotic stress response in microorganisms. Int. J. Food Microbiol., 28, 233-244.
-
(1995)
Int. J. Food Microbiol.
, vol.28
, pp. 233-244
-
-
Gutierrez, C.1
Abee, T.2
Booth, I.R.3
-
10
-
-
14244256556
-
Genome-wide analysis of the general stress response network in Escherichia coli: sS-dependent genes, promoters, and sigma factor selectivity
-
Weber, H., Polen, T., Heuveling, J., Wendisch, V.F., and Hengge, R. (2005) Genome-wide analysis of the general stress response network in Escherichia coli: sS-dependent genes, promoters, and sigma factor selectivity. J. Bacteriol., 187, 1591-1603.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polen, T.2
Heuveling, J.3
Wendisch, V.F.4
Hengge, R.5
-
11
-
-
33745210122
-
-
Rahman, M., Hasan, M.R., Oba, T., and Shimizu, K. (2006) Effect of rpoS gene knockout on the metabolism of Escherichia coli during exponential growth phase and early stationary phase based on gene expressions, enzyme activities and intracellular metabolite concentrations. Biotechnol. Bioeng., 94, 585-595.
-
-
-
-
12
-
-
39849089745
-
New insights into the role of sigma factor RpoS as revealed in Escherichia coli strains lacking the phosphoenolpyruvate : carbohydrate phosphotransferase system
-
Flores, N., Escalante, A., de Anda, R., Báez-Viveros, J.L., Merino, E., Franco, B., Georgellis, D., Gosset, G., and Bolívar, F. (2008) New insights into the role of sigma factor RpoS as revealed in Escherichia coli strains lacking the phosphoenolpyruvate : carbohydrate phosphotransferase system. J. Mol. Microbiol. Biotechnol., 14, 176-192.
-
(2008)
J. Mol. Microbiol. Biotechnol.
, vol.14
, pp. 176-192
-
-
Flores, N.1
Escalante, A.2
De Anda, R.3
Báez-viveros, J.L.4
Merino, E.5
Franco, B.6
Georgellis, D.7
Gosset, G.8
Bolívar, F.9
-
13
-
-
0036198628
-
Recent insights into the general stress response regulatory network in Escherichia coli
-
Hengge-Aronis, R. (2002) Recent insights into the general stress response regulatory network in Escherichia coli. J. Mol. Microbiol. Biotechnol., 4, 341-346.
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, pp. 341-346
-
-
Hengge-aronis, R.1
-
14
-
-
13244259382
-
Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12
-
Patten, C.L., Kirchhof, M.G., Schertzberg, M.R., Morton, R.A., and Schellhorn, H.E. (2004) Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12. Mol. Genet. Genomics, 272, 580-591.
-
(2004)
Mol. Genet. Genomics
, vol.272
, pp. 580-591
-
-
Patten, C.L.1
Kirchhof, M.G.2
Schertzberg, M.R.3
Morton, R.A.4
Schellhorn, H.E.5
-
15
-
-
39249084651
-
RpoS regulation of gene expression during exponential growth of Escherichia coli K12
-
Dong, T., Kirchhof, M.G., and Schellhorn, H.E. (2008) RpoS regulation of gene expression during exponential growth of Escherichia coli K12. Mol. Genet. Genomics, 279, 267-277.
-
(2008)
Mol. Genet. Genomics
, vol.279
, pp. 267-277
-
-
Dong, T.1
Kirchhof, M.G.2
Schellhorn, H.E.3
-
16
-
-
0029843811
-
Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coli
-
Hengge-Aronis, R. (1996) Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coli. Mol. Microbiol., 21, 887-893.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 887-893
-
-
Hengge-aronis, R.1
-
17
-
-
28844435746
-
Acid response of exponentially growing Escherichia coli K-12
-
Seputiene, V., Daugelavicius, A., Suziedelis, K., and Suziedeliene, E. (2006) Acid response of exponentially growing Escherichia coli K-12. Microbiol. Res., 161, 65-74.
-
(2006)
Microbiol. Res.
, vol.161
, pp. 65-74
-
-
Seputiene, V.1
Daugelavicius, A.2
Suziedelis, K.3
Suziedeliene, E.4
-
18
-
-
0031719418
-
Uptake and synthesis of compatible solutes as microbial stress responses to highosmolality environments
-
Kempf, B. and Bremer, E. (1998) Uptake and synthesis of compatible solutes as microbial stress responses to highosmolality environments. Arch. Microbiol., 170, 319-330.
-
(1998)
Arch. Microbiol.
, vol.170
, pp. 319-330
-
-
Kempf, B.1
Bremer, E.2
-
19
-
-
0027166941
-
Trehalose metabolism in Escherichia coli: stress protection and stress regulation of gene expression
-
Strøm, A.R. and Kaasen, I. (1993) Trehalose metabolism in Escherichia coli: stress protection and stress regulation of gene expression. Mol. Microbiol., 8, 205-210.
-
(1993)
Mol. Microbiol.
, vol.8
, pp. 205-210
-
-
Strøm, A.R.1
Kaasen, I.2
-
20
-
-
0026541540
-
Molecular cloning and physical mapping of the otsBA genes, which encode the osmoregulatory trehalose pathway of Escherichia coli: evidence that transcription is activated by katF (AppR)
-
Kaasen, I., Falkenberg, P., Styrvold, O.B., and Strøm, A.R. (1992) Molecular cloning and physical mapping of the otsBA genes, which encode the osmoregulatory trehalose pathway of Escherichia coli: evidence that transcription is activated by katF (AppR). J. Bacteriol., 174, 889-898.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 889-898
-
-
Kaasen, I.1
Falkenberg, P.2
Styrvold, O.B.3
Strøm, A.R.4
-
21
-
-
0026020230
-
Identification of a central regulator of stationary phase gene expression in Escherichia coli
-
Lange, R. and Hengge-Aronis, R.(1991) Identification of a central regulator of stationary phase gene expression in Escherichia coli. Mol. Microbiol., 5, 49-59.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 49-59
-
-
Lange, R.1
Hengge-aronis, R.2
-
22
-
-
0025785253
-
The putative sigma factor KatF has a central role in development of starvation-mediated general resistance in Escherichia coli
-
McCann, M.P., Kidwell, J.P., and Matin, A. (1991) The putative sigma factor KatF has a central role in development of starvation-mediated general resistance in Escherichia coli. J. Bacteriol., 173, 4188-4194.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 4188-4194
-
-
McCann, M.P.1
Kidwell, J.P.2
Matin, A.3
-
23
-
-
0024677030
-
Analysis and DNA sequence of the osmoregulated treA gene encoding the periplasmic trehalase of Escherichia coli K12
-
Gutierrez, C., Ardourel, M., Bremer, E., Middendorf, A., Boos, W., and Ehmann, U. (1989) Analysis and DNA sequence of the osmoregulated treA gene encoding the periplasmic trehalase of Escherichia coli K12. Mol. Gen. Genomics, 217, 347-354.
-
(1989)
Mol. Gen. Genomics
, vol.217
, pp. 347-354
-
-
Gutierrez, C.1
Ardourel, M.2
Bremer, E.3
Middendorf, A.4
Boos, W.5
Ehmann, U.6
-
24
-
-
0029080726
-
Fis activates the RpoS-dependent stationaryphase expression of proP in Escherichia coli
-
Xu, J. and Johnson, R.C. (1995) Fis activates the RpoS-dependent stationaryphase expression of proP in Escherichia coli. J. Bacteriol., 177, 5222-5231.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5222-5231
-
-
Xu, J.1
Johnson, R.C.2
-
25
-
-
0028324804
-
Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH
-
Small, P., Blankenhorn, D., Welty, D., Zinser, E., and Slonczewski, J.L. (1994) Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH. J. Bacteriol., 176, 1729-1737.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1729-1737
-
-
Small, P.1
Blankenhorn, D.2
Welty, D.3
Zinser, E.4
Slonczewski, J.L.5
-
26
-
-
0038349356
-
Regulatory network of acid resistance genes in Escherichia coli
-
Masuda, N. and Church, G.M. (2003) Regulatory network of acid resistance genes in Escherichia coli. Mol. Microbiol., 48, 699-712.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 699-712
-
-
Masuda, N.1
Church, G.M.2
-
27
-
-
1642514566
-
GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli
-
Hommais, F., Krin, E., Coppée, J.Y., Lacroix, C., Yeramian, E., Danchin, A., and Bertin, P. (2004) GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli. Microbiology, 150, 61-72.
-
(2004)
Microbiology
, vol.150
, pp. 61-72
-
-
Hommais, F.1
Krin, E.2
Coppée, J.Y.3
Lacroix, C.4
Yeramian, E.5
Danchin, A.6
Bertin, P.7
-
28
-
-
0141566454
-
GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12
-
Ma, Z., Gong, S., Richard, H., Tucker, D.L., Conway, T., and Foster, J.W. (2003) GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12. Mol. Microbiol., 49, 1309-1320.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 1309-1320
-
-
Ma, Z.1
Gong, S.2
Richard, H.3
Tucker, D.L.4
Conway, T.5
Foster, J.W.6
-
29
-
-
0037966962
-
Genes of the GadX-GadW regulon in Escherichia coli
-
Tucker, D.L., Tucker, N., Ma, Z., Foster, J.W., Miranda, R.L., Cohen, P.S., and Conway, T. (2003) Genes of the GadX-GadW regulon in Escherichia coli. J. Bacteriol., 185, 3190-3201.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3190-3201
-
-
Tucker, D.L.1
Tucker, N.2
Ma, Z.3
Foster, J.W.4
Miranda, R.L.5
Cohen, P.S.6
Conway, T.7
-
30
-
-
0033000806
-
Control of acid resistance in Escherichia coli
-
Castanie-Cornet, M.P., Penfound, T.A., Smith, D., Elliott, J.F., and Foster, J.W. (1999) Control of acid resistance in Escherichia coli. J. Bacteriol., 181, 3525-3535.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3525-3535
-
-
Castanie-cornet, M.P.1
Penfound, T.A.2
Smith, D.3
Elliott, J.F.4
Foster, J.W.5
-
31
-
-
54249135920
-
GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42-bp GadX/GadW-specific binding sites
-
Tramonti, A., De Canio, M., and De Biase, D. (2008) GadX/GadW-dependent regulation of the Escherichia coli acid fitness island: transcriptional control at the gadY-gadW divergent promoters and identification of four novel 42-bp GadX/GadW-specific binding sites. Mol. Microbiol., 70, 965-982.
-
(2008)
Mol. Microbiol.
, vol.70
, pp. 965-982
-
-
Tramonti, A.1
Canio, D.M.2
Biase, D.D.3
-
32
-
-
0027509821
-
Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation
-
Hengge-Aronis, R. (1993) Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation. Cell, 72, 165-168.
-
(1993)
Cell
, vol.72
, pp. 165-168
-
-
Hengge-aronis, R.1
-
33
-
-
34548720319
-
The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli
-
Klauck, E., Typas, A., and Hengge, R. (2007) The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli. Sci. Prog., 90, 103-127.
-
(2007)
Sci. Prog.
, vol.90
, pp. 103-127
-
-
Klauck, E.1
Typas, A.2
Hengge, R.3
-
34
-
-
0028787734
-
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of sigma 70 and sigma 38
-
Jishage, M. and Ishihama, A. (1995) Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of sigma 70 and sigma 38. J. Bacteriol., 177, 6832-6835.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6832-6835
-
-
Jishage, M.1
Ishihama, A.2
-
35
-
-
0028176450
-
The cellular concentration of the sS subunit of RNA-polymerase in Escherichia coli is controlled at the levels of transcription, translation and protein stability
-
Lange, R. and Hengge-Aronis, R. (1994) The cellular concentration of the sS subunit of RNA-polymerase in Escherichia coli is controlled at the levels of transcription, translation and protein stability. Genes Dev., 8, 1600-1612.
-
(1994)
Genes Dev.
, vol.8
, pp. 1600-1612
-
-
Lange, R.1
Hengge-aronis, R.2
-
36
-
-
0037023221
-
The importance of RpoS in the survival of bacteria through food processing
-
Dodd, C.E.R. and Aldsworth, T.G. (2002) The importance of RpoS in the survival of bacteria through food processing. Int. J. Food Microbiol., 74, 189-194.
-
(2002)
Int. J. Food Microbiol.
, vol.74
, pp. 189-194
-
-
Dodd, C.E.R.1
Aldsworth, T.G.2
-
37
-
-
0029961688
-
Acid shock induction of RpoS is mediated by the mouse virulence gene mviA of Salmonella typhimurium
-
Bearson, S.M., Benjamin, W.H. Jr., Swords, W.E., and Foster, J.W. (1996) Acid shock induction of RpoS is mediated by the mouse virulence gene mviA of Salmonella typhimurium. J. Bacteriol., 178, 2572-2579.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2572-2579
-
-
Bearson, S.M.1
Benjamin Jr., W.H.2
Swords, W.E.3
Foster, J.W.4
-
38
-
-
0035281566
-
The RssB response regulator directly targets sigmaS for degradation by ClpXP
-
Zhou, Y., Gottesman, S., Hoskins, J.R., Maurizi, M.R., and Wickner, S. (2001) The RssB response regulator directly targets sigmaS for degradation by ClpXP. Genes Dev., 15, 627-637.
-
(2001)
Genes Dev.
, vol.15
, pp. 627-637
-
-
Zhou, Y.1
Gottesman, S.2
Hoskins, J.R.3
Maurizi, M.R.4
Wickner, S.5
-
39
-
-
0037709130
-
Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different?
-
Venturi, V. (2003) Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different? Mol. Microbiol., 49, 1-9.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 1-9
-
-
Venturi, V.1
-
40
-
-
0028106775
-
The nlpD gene is located in an operon with rpoS on the Escherichia coli chromosome and encodes a novel lipoprotein with a potential function in cell wall formation
-
Lange, R. and Hengge-Aronis, R. (1994) The nlpD gene is located in an operon with rpoS on the Escherichia coli chromosome and encodes a novel lipoprotein with a potential function in cell wall formation. Mol. Microbiol., 13, 733-743.
-
(1994)
Mol. Microbiol.
, vol.13
, pp. 733-743
-
-
Lange, R.1
Hengge-aronis, R.2
-
41
-
-
0035150147
-
Negative control of rpoS expression by phosphoenolpyruvate : carbohydrate phosphotransferase system in Escherichia coli
-
Ueguchi, C., Misonou, N., and Mizuno, T. (2001) Negative control of rpoS expression by phosphoenolpyruvate : carbohydrate phosphotransferase system in Escherichia coli. J. Bacteriol., 183, 520-527.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 520-527
-
-
Ueguchi, C.1
Misonou, N.2
Mizuno, T.3
-
42
-
-
12644263413
-
Inorganic polyphosphate and the induction of rpoS expression
-
Shiba, T., Tsutsumi, K., Yano, H., Ihara, Y., Kameda, A., Tanaka, K., Takahashi, K., Munekata, M., Rao, N.N., and Kornberg, A. (1997) Inorganic polyphosphate and the induction of rpoS expression. Proc. Natl. Acad. Sci. USA, 94, 11210-11215.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11210-11215
-
-
Shiba, T.1
Tsutsumi, K.2
Yano, H.3
Ihara, Y.4
Kameda, A.5
Tanaka, K.6
Takahashi, K.7
Munekata, M.8
Rao, N.N.9
Kornberg, A.10
-
43
-
-
44749093027
-
The long and short of it-polyphosphate, PPK and bacterial survival
-
Brown, M.R. and Kornberg, A. (2008) The long and short of it-polyphosphate, PPK and bacterial survival. Trends Biochem. Sci., 33, 284-290.
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 284-290
-
-
Brown, M.R.1
Kornberg, A.2
-
44
-
-
0025315968
-
Polyphosphate kinase from Escherichia coli. Purification and demonstration of a phosphoenzyme intermediate
-
Ahn, K. and Kornberg, A. (1990) Polyphosphate kinase from Escherichia coli. Purification and demonstration of a phosphoenzyme intermediate. J. Biol. Chem., 265, 11734-11739.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 11734-11739
-
-
Ahn, K.1
Kornberg, A.2
-
45
-
-
0027439691
-
An exopolyphosphatase of Escherichia coli. The enzyme and its ppx gene in a polyphosphate operon
-
Akiyama, M., Crooke, E., and Kornberg, A. (2003) An exopolyphosphatase of Escherichia coli. The enzyme and its ppx gene in a polyphosphate operon. J. Biol. Chem., 268, 633-639.
-
(2003)
J. Biol. Chem.
, vol.268
, pp. 633-639
-
-
Akiyama, M.1
Crooke, E.2
Kornberg, A.3
-
46
-
-
0030771435
-
Guanosine tetraand pentaphosphate promote accumulation of inorganic polyphosphate in Escherichia coli
-
Kuroda, A., Murphy, H., Cashel, M., and Kornberg, A. (1997) Guanosine tetraand pentaphosphate promote accumulation of inorganic polyphosphate in Escherichia coli. J. Biol. Chem., 272, 21240-21243.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 21240-21243
-
-
Kuroda, A.1
Murphy, H.2
Cashel, M.3
Kornberg, A.4
-
47
-
-
18044367581
-
ppGpp: a global regulator in Escherichia coli
-
Magnusson, L.U., Farewell, A., and Nyström, T. (2005) ppGpp: a global regulator in Escherichia coli. Trends Microbiol., 13, 236-242.
-
(2005)
Trends Microbiol.
, vol.13
, pp. 236-242
-
-
Magnusson, L.U.1
Farewell, A.2
Nyström, T.3
-
48
-
-
30344476728
-
New horizons for (p)ppGpp in bacterial and plant physiology
-
Braeken, K., Moris, M., Daniels, R., Vanderleyden, J., and Michiels, J. (2006) New horizons for (p)ppGpp in bacterial and plant physiology. Trends Microbiol., 14, 45-54.
-
(2006)
Trends Microbiol.
, vol.14
, pp. 45-54
-
-
Braeken, K.1
Moris, M.2
Daniels, R.3
Vanderleyden, J.4
Michiels, J.5
-
49
-
-
0027139270
-
Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp
-
Gentry, D.R., Hernandez, V.J., Nguyen, L.H., Jensen, D.B., and Cashel, M. (1993) Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp. J. Bacteriol., 175, 7982-7989.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 7982-7989
-
-
Gentry, D.R.1
Hernandez, V.J.2
Nguyen, L.H.3
Jensen, D.B.4
Cashel, M.5
-
50
-
-
0029082430
-
Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coli
-
Lange, R., Fischer, D., and Hengge-Aronis, R. (1995) Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coli. J. Bacteriol., 177, 4676-4680.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4676-4680
-
-
Lange, R.1
Fischer, D.2
Hengge-aronis, R.3
-
51
-
-
0033942883
-
Transcriptional induction of the conserved alternative sigma factor RpoS in Escherichia coli is dependent on BarA, a probable two-component regulator
-
Mukhopadhyay, S., Audia, J.P., Roy, R.N., and Schellhorn, H.E. (2000) Transcriptional induction of the conserved alternative sigma factor RpoS in Escherichia coli is dependent on BarA, a probable two-component regulator. Mol. Microbiol., 37, 371-381.
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 371-381
-
-
Mukhopadhyay, S.1
Audia, J.P.2
Roy, R.N.3
Schellhorn, H.E.4
-
52
-
-
0031015478
-
Heat shock regulation of sS turnover: a role for DnaK and relationship between stress responses mediated by sS and s32 in Escherichia coli
-
Muffler, A., Barth, M., Marschall, C., and Hengge-Aronis, R. (1997) Heat shock regulation of sS turnover: a role for DnaK and relationship between stress responses mediated by sS and s32 in Escherichia coli. J. Bacteriol., 179, 445-452.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 445-452
-
-
Muffler, A.1
Barth, M.2
Marschall, C.3
Hengge-aronis, R.4
-
53
-
-
34247109118
-
Hfq structure, function and ligand binding
-
Brennan, R.G. and Link, T.M. (2007) Hfq structure, function and ligand binding. Curr. Opin. Microbiol., 10, 125-133.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 125-133
-
-
Brennan, R.G.1
Link, T.M.2
-
54
-
-
0029897937
-
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli
-
Muffler, A., Fischer, D., and Hengge-Aronis, R. (1996) The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli. Genes Dev., 10, 1143-1151.
-
(1996)
Genes Dev.
, vol.10
, pp. 1143-1151
-
-
Muffler, A.1
Fischer, D.2
Hengge-aronis, R.3
-
55
-
-
16544365115
-
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs
-
Mikulecky, P.J., Kaw, M.K., Brescia, C.C., Takach, J.C., Sledjeski, D.D., and Feig, A.L. (2004) Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs. Nat. Struct. Mol. Biol., 11, 1206-1214.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1206-1214
-
-
Mikulecky, P.J.1
Kaw, M.K.2
Brescia, C.C.3
Takach, J.C.4
Sledjeski, D.D.5
Feig, A.L.6
-
56
-
-
0032514739
-
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
-
Majdalani, N., Cunning, C., Sledjeski, D., Elliot, T., and Gottesman, S. (1998) DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc. Natl. Acad. Sci. USA, 95, 12462-12467.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12462-12467
-
-
Majdalani, N.1
Cunning, C.2
Sledjeski, D.3
Elliot, T.4
Gottesman, S.5
-
57
-
-
0034730125
-
A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures
-
Lease, R.A. and Belfort, M. (2000) A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures. Proc. Natl. Acad. Sci. USA, 97, 9919-9924.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9919-9924
-
-
Lease, R.A.1
Belfort, M.2
-
58
-
-
0033639199
-
Riboregulation by DsrA RNA: transactions for global economy
-
Lease, R.A. and Belfort, M. (2000) Riboregulation by DsrA RNA: transactions for global economy. Mol. Microbiol., 38, 667-672.
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 667-672
-
-
Lease, R.A.1
Belfort, M.2
-
59
-
-
9244253711
-
Cycling of the SM-like protein Hfq on the DsrA small regulatory RNA
-
Lease, R.A. and Woodson, S.A. (2004) Cycling of the SM-like protein Hfq on the DsrA small regulatory RNA. J. Mol. Biol., 344, 1211-1223.
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 1211-1223
-
-
Lease, R.A.1
Woodson, S.A.2
-
60
-
-
0035104707
-
Hfq is necessary for regulation by the untranslated RNA DsrA
-
Sledjeski, D., Whitman, C.W., and Zhang, A. (2001) Hfq is necessary for regulation by the untranslated RNA DsrA. J. Bacteriol., 183, 1997-2005.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1997-2005
-
-
Sledjeski, D.1
Whitman, C.W.2
Zhang, A.3
-
61
-
-
0038187589
-
Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm
-
Repoila, F., Majdalani, N., and Gottesman, S. (2003) Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm. Mol. Microbiol., 48, 855-861.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 855-861
-
-
Repoila, F.1
Majdalani, N.2
Gottesman, S.3
-
62
-
-
0242575015
-
Temperature sensing by the dsrA promoter
-
Repoila, F. and Gottesman, S. (2003) Temperature sensing by the dsrA promoter. J. Bacteriol., 185, 6609-6614.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6609-6614
-
-
Repoila, F.1
Gottesman, S.2
-
63
-
-
4344682527
-
The small RNA regulators of Escherichia coli: roles and mechanisms
-
Gottesman, S. (2004) The small RNA regulators of Escherichia coli: roles and mechanisms. Annu. Rev. Microbiol., 58, 303-328.
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 303-328
-
-
Gottesman, S.1
-
64
-
-
0032531904
-
The oxyS regulatory RNA represses rpoS translation by binding Hfq (HF-1) protein
-
Zhang, A., Altuvia, S., Tiwari, A., Argaman, L., Hengge-Aronis, R., and Storz, G. (1998) The oxyS regulatory RNA represses rpoS translation by binding Hfq (HF-1) protein. EMBO J., 17, 6061-6068.
-
(1998)
EMBO J.
, vol.17
, pp. 6061-6068
-
-
Zhang, A.1
Altuvia, S.2
Tiwari, A.3
Argaman, L.4
Hengge-aronis, R.5
Storz, G.6
-
65
-
-
0031459386
-
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator
-
Altuvia, S., Almirón, M., Huisman, G., Kolter, R., and Storz, G. (1997) A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator. Cell, 90, 43-53.
-
(1997)
Cell
, vol.90
, pp. 43-53
-
-
Altuvia, S.1
Almirón, M.2
Huisman, G.3
Kolter, R.4
Storz, G.5
-
66
-
-
0033214062
-
The binding motif recognized by HU on both nicked and cruciform DNA
-
Kamashev, D., Balandina, A., and Rouviére-Yaniv, J. (1999) The binding motif recognized by HU on both nicked and cruciform DNA. EMBO J., 18, 5434-5444.
-
(1999)
EMBO J.
, vol.18
, pp. 5434-5444
-
-
Kamashev, D.1
Balandina, A.2
Rouviére-yaniv, J.3
-
67
-
-
0035117825
-
The Escherichia coli histone-like protein HU regulates rpoS translation
-
Balandina, A., Claret, L., Hengge-Aronis, R., and Rouviére-Yaniv, J. (2001) The Escherichia coli histone-like protein HU regulates rpoS translation. Mol. Microbiol., 39, 1069-1079.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1069-1079
-
-
Balandina, A.1
Claret, L.2
Hengge-aronis, R.3
Rouviére-yaniv, J.4
-
68
-
-
33748055114
-
H-NS mediates the silencing of laterally acquired genes in bacteria
-
Lucchini, S., Rowley, G., Goldberg, M.D., Hurd, D., Harrison, M., and Hinton, J.C. (2006) H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathogens, 2, e81.
-
(2006)
PLoS Pathogens
, vol.2
-
-
Lucchini, S.1
Rowley, G.2
Goldberg, M.D.3
Hurd, D.4
Harrison, M.5
Hinton, J.C.6
-
69
-
-
33846465923
-
H-NS, the genome sentinel
-
Dorman, C.J. (2007) H-NS, the genome sentinel. Nat. Rev. Microbiol., 5, 157-161.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 157-161
-
-
Dorman, C.J.1
-
70
-
-
2442483884
-
The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivo
-
Brescia, C.C., Kaw, M.K., and Sledjeski, D.D. (2004) The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivo. J. Mol. Biol., 339, 505-514.
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 505-514
-
-
Brescia, C.C.1
Kaw, M.K.2
Sledjeski, D.D.3
-
71
-
-
0028895391
-
Quantitative control of the stationary phase-specific sigma factor, sS, in Escherichia coli: involvement of the nucleoid protein HNS
-
Yamashino, T., Ueguchi, C., and Mizuno, T. (1995) Quantitative control of the stationary phase-specific sigma factor, sS, in Escherichia coli: involvement of the nucleoid protein HNS. EMBO J., 14, 594-602.
-
(1995)
EMBO J.
, vol.14
, pp. 594-602
-
-
Yamashino, T.1
Ueguchi, C.2
Mizuno, T.3
-
72
-
-
0036331056
-
DksA affects ppGpp induction of RpoS at a translational level
-
Brown, L., Gentry, D., Elliott, T., and Cashel, M. (2002) DksA affects ppGpp induction of RpoS at a translational level. J. Bacteriol., 184, 4455-4465.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 4455-4465
-
-
Brown, L.1
Gentry, D.2
Elliott, T.3
Cashel, M.4
-
73
-
-
0031884182
-
Regulation of proteolysis of the stationary-phase sigma factor RpoS
-
Zhou, Y. and Gottesman, S. (1998) Regulation of proteolysis of the stationary-phase sigma factor RpoS. J. Bacteriol., 180, 1154-1158.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 1154-1158
-
-
Zhou, Y.1
Gottesman, S.2
-
74
-
-
0030033933
-
Regulation of Escherichia coli starvation sigma factor (sS) by ClpXP protease
-
Schweder, T., Lee, K., Lomovskaya, O., and Matin, A. (1996) Regulation of Escherichia coli starvation sigma factor (sS) by ClpXP protease. J. Bacteriol., 178, 470-476.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 470-476
-
-
Schweder, T.1
Lee, K.2
Lomovskaya, O.3
Matin, A.4
-
75
-
-
0029983001
-
The response regulator SprE controls the stability of RpoS
-
Pratt, L.A. and Silhavy, T.J. (1996) The response regulator SprE controls the stability of RpoS. Proc. Natl. Acad. Sci. USA, 93, 2488-2492.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 2488-2492
-
-
Pratt, L.A.1
Silhavy, T.J.2
-
76
-
-
6044235523
-
RpoS proteolysis is regulated by a mechanism that does not require the SprE (RssB) response regulator phosphorylation site
-
Peterson, C.N., Ruiz, N., and Silhavy, T.J. (2004) RpoS proteolysis is regulated by a mechanism that does not require the SprE (RssB) response regulator phosphorylation site. J. Bacteriol., 186, 7403-7410.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7403-7410
-
-
Peterson, C.N.1
Ruiz, N.2
Silhavy, T.J.3
-
77
-
-
33645522854
-
Modulating RssB activity: IraP, a novel regulator of sigmaS stability in Escherichia coli
-
Bougdour, A., Wickner, S., and Gottesman, S. (2006) Modulating RssB activity: IraP, a novel regulator of sigmaS stability in Escherichia coli. Genes Dev., 20, 884-897.
-
(2006)
Genes Dev.
, vol.20
, pp. 884-897
-
-
Bougdour, A.1
Wickner, S.2
Gottesman, S.3
-
78
-
-
34547913090
-
ppGpp regulation of RpoS degradation via anti-adaptor protein IraP
-
Bougdour, A. and Gottesman, S. (2007) ppGpp regulation of RpoS degradation via anti-adaptor protein IraP. Proc. Natl. Acad. Sci. USA, 104, 12896-12901.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 12896-12901
-
-
Bougdour, A.1
Gottesman, S.2
-
79
-
-
41049111259
-
Multiple pathways for regulation of sigmaS (RpoS) stability in Escherichia coli via the action of multiple anti-adaptors
-
Bougdour, A., Cunning, C., Baptiste, P.J., Elliott, T., and Gottesman, S. (2008) Multiple pathways for regulation of sigmaS (RpoS) stability in Escherichia coli via the action of multiple anti-adaptors. Mol. Microbiol., 68, 298-313.
-
(2008)
Mol. Microbiol.
, vol.68
, pp. 298-313
-
-
Bougdour, A.1
Cunning, C.2
Baptiste, P.J.3
Elliott, T.4
Gottesman, S.5
-
80
-
-
34147125783
-
Decline in ribosomal fidelity contributes to the accumulation and stabilization of the master stress response regulator sigmaS upon carbon starvation
-
Fredriksson, A., Ballesteros, M., Peterson, C.N., Persson, O., Silhavy, T.J., and Nyström, T. (2007) Decline in ribosomal fidelity contributes to the accumulation and stabilization of the master stress response regulator sigmaS upon carbon starvation. Genes Dev., 21, 862-874.
-
(2007)
Genes Dev.
, vol.21
, pp. 862-874
-
-
Fredriksson, A.1
Ballesteros, M.2
Peterson, C.N.3
Persson, O.4
Silhavy, T.J.5
Nyström, T.6
-
81
-
-
0031844376
-
Negative regulation by RpoS: a case of sigma factor competition
-
Farewell, A., Kvint, K., and Nyström, T. (1998) Negative regulation by RpoS: a case of sigma factor competition. Mol. Microbiol., 29, 1039-1051.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 1039-1051
-
-
Farewell, A.1
Kvint, K.2
Nyström, T.3
-
82
-
-
8544232750
-
Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition?
-
Nyström, T. (2004) Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition? Mol. Microbiol., 54, 855-862.
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 855-862
-
-
Nyström, T.1
-
83
-
-
0029810991
-
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions
-
Jishage, M., Iwata, A., Ueda, S, and Ishihama, A. (1996) Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions. J. Bacteriol., 178, 5447-5451.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5447-5451
-
-
Jishage, M.1
Iwata, A.2
Ueda, S.3
Ishihama, A.4
-
84
-
-
0034666279
-
Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase
-
Maeda, H., Fujita, N., and Ishihama, A. (2000) Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase. Nucleic Acids Res., 28, 3497-3503.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3497-3503
-
-
Maeda, H.1
Fujita, N.2
Ishihama, A.3
-
85
-
-
0035847007
-
Binding of the transcription effector ppGpp to Escherichia coli RNA polymerase is allosteric, modular, and occurs near the N terminus of the betau-subunit
-
Toulokhonov, I.I., Shulgina, I., and Hernandez, V.J. (2001) Binding of the transcription effector ppGpp to Escherichia coli RNA polymerase is allosteric, modular, and occurs near the N terminus of the betau-subunit. J. Biol. Chem., 276, 1220-1225.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 1220-1225
-
-
Toulokhonov, I.I.1
Shulgina, I.2
Hernandez, V.J.3
-
86
-
-
2042475439
-
Structural basis for transcription regulation by alarmone ppGpp
-
Artsimovitch, I., Patlan, V., Sekine, S., Vassylyeva, M.N., Hosaka, T., Ochi, K., Yokoyama, S., and Vassylyev, D.G. (2004) Structural basis for transcription regulation by alarmone ppGpp. Cell, 117, 299-310.
-
(2004)
Cell
, vol.117
, pp. 299-310
-
-
Artsimovitch, I.1
Patlan, V.2
Sekine, S.3
Vassylyeva, M.N.4
Hosaka, T.5
Ochi, K.6
Yokoyama, S.7
Vassylyev, D.G.8
-
87
-
-
0028200484
-
The dps promoter is activated by OxyR during growth and by IHF and S in stationary phase
-
Altuvia, S., Almirón, M., Huisman, G., Kolter, R., and Storz, G. (1994) The dps promoter is activated by OxyR during growth and by IHF and S in stationary phase. Mol. Microbiol., 13, 265-272.
-
(1994)
Mol. Microbiol.
, vol.13
, pp. 265-272
-
-
Altuvia, S.1
Almirón, M.2
Huisman, G.3
Kolter, R.4
Storz, G.5
-
88
-
-
0027285868
-
Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure
-
Wang, Q. and Calvo, J.M. (1993) Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure. EMBO J., 12, 2495-2501.
-
(1993)
EMBO J.
, vol.12
, pp. 2495-2501
-
-
Wang, Q.1
Calvo, J.M.2
|