-
1
-
-
0028240370
-
Characterization of the carbon starvation-inducible and stationary phase-inducible gene slp encoding an outer membrane lipoprotein in Escherichia coli
-
Alexander, D.M., and St John, A.C. (1994) Characterization of the carbon starvation-inducible and stationary phase-inducible gene slp encoding an outer membrane lipoprotein in Escherichia coli. Mol Microbiol 11: 1059-1071.
-
(1994)
Mol Microbiol
, vol.11
, pp. 1059-1071
-
-
Alexander, D.M.1
St John, A.C.2
-
2
-
-
0026050627
-
Structural and genetic analysis of the bvg locus in Bordetella species
-
Arico, B., Scarlato, V., Monack, D.M., Falkow, S., and Rappuoli, R. (1991) Structural and genetic analysis of the bvg locus in Bordetella species. Mol Microbiol 5: 2481-2491.
-
(1991)
Mol Microbiol
, vol.5
, pp. 2481-2491
-
-
Arico, B.1
Scarlato, V.2
Monack, D.M.3
Falkow, S.4
Rappuoli, R.5
-
3
-
-
0031049325
-
Acid stress responses in enterobacteria
-
Bearson, S., Bearson, B., and Foster, J.W. (1997) Acid stress responses in enterobacteria. FEMS Microbiol Lett 147: 173-180.
-
(1997)
FEMS Microbiol Lett
, vol.147
, pp. 173-180
-
-
Bearson, S.1
Bearson, B.2
Foster, J.W.3
-
4
-
-
0031791392
-
atp mutants of Escherichia coli fail to grow on succinate due to a transport deficiency
-
Boogerd, F.C., Boe, L., Michelsen, O., and Jensen, P.R. (1998) atp mutants of Escherichia coli fail to grow on succinate due to a transport deficiency. J Bacteriol 180: 5855-5859.
-
(1998)
J Bacteriol
, vol.180
, pp. 5855-5859
-
-
Boogerd, F.C.1
Boe, L.2
Michelsen, O.3
Jensen, P.R.4
-
5
-
-
0033000806
-
Control of acid resistance in Escherichia coli
-
Castanie-Cornet, M.P., Penfound, T.A., Smith, D., Elliott, J.F., and Foster, J.W. (1999) Control of acid resistance in Escherichia coli. J Bacteriol 181: 3525-3535.
-
(1999)
J Bacteriol
, vol.181
, pp. 3525-3535
-
-
Castanie-Cornet, M.P.1
Penfound, T.A.2
Smith, D.3
Elliott, J.F.4
Foster, J.W.5
-
6
-
-
0033037702
-
The response to stationary-phase stress conditions in Escherichia coli: Role and regulation of the glutamic acid decarboxylase system
-
De Biase, D., Tramonti, A., Bossa, F., and Visca, P. (1999) The response to stationary-phase stress conditions in Escherichia coli: role and regulation of the glutamic acid decarboxylase system. Mol Microbiol 32: 1198-1211.
-
(1999)
Mol Microbiol
, vol.32
, pp. 1198-1211
-
-
De Biase, D.1
Tramonti, A.2
Bossa, F.3
Visca, P.4
-
7
-
-
0027957161
-
Quorum sensing in bacteria: The LuxR/Luxl family of cell density responsive transcriptional regulators
-
Fuqua, W.C., Winans, S.C., and Greenberg, E.P. (1994) Quorum sensing in bacteria: the LuxR/Luxl family of cell density responsive transcriptional regulators. J Bacteriol 176: 269-275.
-
(1994)
J Bacteriol
, vol.176
, pp. 269-275
-
-
Fuqua, W.C.1
Winans, S.C.2
Greenberg, E.P.3
-
8
-
-
0034695425
-
HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria
-
Gajiwala, K.S., and Burley, S.K. (2000) HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria. J Mol Biol 295: 605-612.
-
(2000)
J Mol Biol
, vol.295
, pp. 605-612
-
-
Gajiwala, K.S.1
Burley, S.K.2
-
9
-
-
0031452318
-
AraC/XylS family of transcriptional regulators
-
Gallegos, M., Schleif, R., Bairoch, A., Hofmann, K., and Ramos, J.L. (1997) AraC/XylS family of transcriptional regulators. Microbiol Mol Biol Rev 61: 393-410.
-
(1997)
Microbiol Mol Biol Rev
, vol.61
, pp. 393-410
-
-
Gallegos, M.1
Schleif, R.2
Bairoch, A.3
Hofmann, K.4
Ramos, J.L.5
-
10
-
-
0027390911
-
Acid resistance in enteric bacteria
-
Gordon, J., and Small, P.L.C. (1993) Acid resistance in enteric bacteria. Infect Immun 61: 364-367.
-
(1993)
Infect Immun
, vol.61
, pp. 364-367
-
-
Gordon, J.1
Small, P.L.C.2
-
11
-
-
0029933664
-
A glutamate-dependent acid resistance gene in Escherichia coli
-
Hersh, B.M., Farooq, F.T., Barstad, D.N., Blankenhorn, D.L., and Slonczewski, J.L. (1996) A glutamate-dependent acid resistance gene in Escherichia coli. J Bacteriol 178: 3978-3981.
-
(1996)
J Bacteriol
, vol.178
, pp. 3978-3981
-
-
Hersh, B.M.1
Farooq, F.T.2
Barstad, D.N.3
Blankenhorn, D.L.4
Slonczewski, J.L.5
-
12
-
-
0034035586
-
Two-component and phosphorelay signal transduction
-
Hoch, J.A. (2000) Two-component and phosphorelay signal transduction. Curr Opin Microbiol 3: 165-170.
-
(2000)
Curr Opin Microbiol
, vol.3
, pp. 165-170
-
-
Hoch, J.A.1
-
13
-
-
0035047678
-
Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein H-NS
-
Hommais, F., Krin, E., Laurent-Winter, C., Soutourina, O., Malpertuy, A., Le Caer, J.P., et al. (2001) Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein H-NS. Mol Microbiol 40: 20-36.
-
(2001)
Mol Microbiol
, vol.40
, pp. 20-36
-
-
Hommais, F.1
Krin, E.2
Laurent-Winter, C.3
Soutourina, O.4
Malpertuy, A.5
Le Caer, J.P.6
-
14
-
-
0037126294
-
A biological role for prokaryotic CIC chloride channels
-
Iyer, R., Iverson, T.M., Accardi, A., and Miller, C. (2002) A biological role for prokaryotic CIC chloride channels. Nature 419: 715-718.
-
(2002)
Nature
, vol.419
, pp. 715-718
-
-
Iyer, R.1
Iverson, T.M.2
Accardi, A.3
Miller, C.4
-
15
-
-
0034200612
-
Transcription of emrKY is regulated by the EvgA-EvgS two-component system in Escherichia coli K-12
-
Kato, A., Ohnishi, H., Yamamoto, K., Furuta, E., Tanabe, H., and Utsumi, R. (2000) Transcription of emrKY is regulated by the EvgA-EvgS two-component system in Escherichia coli K-12. Biosci Biotechnol Biochem 64: 1203-1209.
-
(2000)
Biosci Biotechnol Biochem
, vol.64
, pp. 1203-1209
-
-
Kato, A.1
Ohnishi, H.2
Yamamoto, K.3
Furuta, E.4
Tanabe, H.5
Utsumi, R.6
-
16
-
-
0029073161
-
Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli
-
Lin, J., Lee, I.S., Frey, J., Slonczewski, J.L., and Foster, J.W. (1995) Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli. J Bacteriol 177: 4097-4104.
-
(1995)
J Bacteriol
, vol.177
, pp. 4097-4104
-
-
Lin, J.1
Lee, I.S.2
Frey, J.3
Slonczewski, J.L.4
Foster, J.W.5
-
17
-
-
0029832195
-
Mechanisms of acid resistance in enterohemorrhagic Escherichia coli
-
Lin, J., Smith, M.P., Chapin, K.C., Baik, H.S., Bennett, G.N., and Foster, J.W. (1996) Mechanisms of acid resistance in enterohemorrhagic Escherichia coli. Appl Environ Microbiol 62: 3094-3100.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3094-3100
-
-
Lin, J.1
Smith, M.P.2
Chapin, K.C.3
Baik, H.S.4
Bennett, G.N.5
Foster, J.W.6
-
18
-
-
0030796260
-
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: Application to open reading frame characterization
-
Link, A.J., Phillips, D., and Church, G.M. (1997) Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization. J Bacteriol 179: 6228-6237.
-
(1997)
J Bacteriol
, vol.179
, pp. 6228-6237
-
-
Link, A.J.1
Phillips, D.2
Church, G.M.3
-
19
-
-
0028926676
-
Genes acrA and acrB encode a stress-induced efflux system of Escherichia coli
-
Ma, D., Cook, D.N., Alberti, M., Pon, N.G., Nikaido, H., and Hearst, J.E. (1995) Genes acrA and acrB encode a stress-induced efflux system of Escherichia coli. Mol Microbiol 16: 45-55.
-
(1995)
Mol Microbiol
, vol.16
, pp. 45-55
-
-
Ma, D.1
Cook, D.N.2
Alberti, M.3
Pon, N.G.4
Nikaido, H.5
Hearst, J.E.6
-
20
-
-
0036956513
-
Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-Like regulators, GadX and GadW (YhiW)
-
Ma, Z., Richard, H., Tucker, D.L., Conway, T., and Foster, J.W. (2002) Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-Like regulators, GadX and GadW (YhiW). J Bacteriol 184: 7001-7012.
-
(2002)
J Bacteriol
, vol.184
, pp. 7001-7012
-
-
Ma, Z.1
Richard, H.2
Tucker, D.L.3
Conway, T.4
Foster, J.W.5
-
21
-
-
0036843687
-
Escherichia coli gene expression responsive to revels of response regutator EvgA
-
Masuda, N., and Church, G.M. (2002) Escherichia coli gene expression responsive to revels of response regutator EvgA. J Bacteriol 184: 6225-6234.
-
(2002)
J Bacteriol
, vol.184
, pp. 6225-6234
-
-
Masuda, N.1
Church, G.M.2
-
23
-
-
0035145680
-
Overexpression of the response regulator evgA of the two-component signal transduction system modulates multidrug resistance conferred by multidrug resistance transporters
-
Nishino, K., and Yamaguchi, A. (2001) Overexpression of the response regulator evgA of the two-component signal transduction system modulates multidrug resistance conferred by multidrug resistance transporters. J Bacteriol 183: 1455-1458.
-
(2001)
J Bacteriol
, vol.183
, pp. 1455-1458
-
-
Nishino, K.1
Yamaguchi, A.2
-
24
-
-
0036206907
-
EvgA of the Two-component signal transduction system modulates production of the YhiUV multidrug transporter in Escherichia coli
-
Nishino, K., and Yamaguchi, A. (2002) EvgA of the Two-component signal transduction system modulates production of the YhiUV multidrug transporter in Escherichia coli. J Bacteriol 184: 2319-2323.
-
(2002)
J Bacteriol
, vol.184
, pp. 2319-2323
-
-
Nishino, K.1
Yamaguchi, A.2
-
25
-
-
0015327122
-
Novel method for detection of β-lactamases by using a chromogenic cephalosporin substrate
-
O'Callaghan, C.H., Morris, A., Kirby, S.M., and Shingler, A.H. (1972) Novel method for detection of β-lactamases by using a chromogenic cephalosporin substrate. Antimicrob Agents Chemother 1: 283-288.
-
(1972)
Antimicrob Agents Chemother
, vol.1
, pp. 283-288
-
-
O'Callaghan, C.H.1
Morris, A.2
Kirby, S.M.3
Shingler, A.H.4
-
26
-
-
0035883922
-
DNA microarray analysis of Bacillus subtilis DegU, Coma and PhoP regulons: An approach to comprehensive analysis of Bacillus subtilis two-component regulatory systems
-
Ogura, M., Yamaguchi, H., Yoshida, K., Fujita, Y., and Tanaka, T. (2001) DNA microarray analysis of Bacillus subtilis DegU, Coma and PhoP regulons: an approach to comprehensive analysis of Bacillus subtilis two-component regulatory systems. Nucleic Acids Res 29: 3804-3813.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3804-3813
-
-
Ogura, M.1
Yamaguchi, H.2
Yoshida, K.3
Fujita, Y.4
Tanaka, T.5
-
28
-
-
0032573426
-
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
-
Robison, K.R., McGuire, A.M., and Church, G.M. (1998) A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J Mol Biol 284: 241-254.
-
(1998)
J Mol Biol
, vol.284
, pp. 241-254
-
-
Robison, K.R.1
McGuire, A.M.2
Church, G.M.3
-
29
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth, F.P., Hughes, J.D., Estep, P.W., and Church, G.M. (1998) Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nature Biotechnol 16: 939-945.
-
(1998)
Nature Biotechnol
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
30
-
-
0004136246
-
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Sambrook, J., Fritsch, E., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Edn.
-
-
Sambrook, J.1
Fritsch, E.2
Maniatis, T.3
-
31
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
Schneider, T.D., and Stephens, R.M. (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res 34: 6097-6100.
-
(1990)
Nucleic Acids Res
, vol.34
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
32
-
-
0033664358
-
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
-
Selinger, D.W., Cheung, K.J., Mei, R., Johansson, E.M., Richmond, C.S., Blattner, F.R., et al. (2000) RNA expression analysis using a 30 base pair resolution Escherichia coli genome array. Nature Biotechnol 18: 1262-1268.
-
(2000)
Nature Biotechnol
, vol.18
, pp. 1262-1268
-
-
Selinger, D.W.1
Cheung, K.J.2
Mei, R.3
Johansson, E.M.4
Richmond, C.S.5
Blattner, F.R.6
-
33
-
-
0035788432
-
An activator of glutamate decarboxylase genes regulates the expression of enteropathogenic Escherichia coli virulence genes through control of the plasmid-encoded regulator, Per
-
Shin, S., Castanie-Cornet, M.P., Foster, J.W., Crawford, J.A., Brinkley, C., and Kaper, J.B. (2001) An activator of glutamate decarboxylase genes regulates the expression of enteropathogenic Escherichia coli virulence genes through control of the plasmid-encoded regulator, Per. Mol Microbiol 41: 1133-1150.
-
(2001)
Mol Microbiol
, vol.41
, pp. 1133-1150
-
-
Shin, S.1
Castanie-Cornet, M.P.2
Foster, J.W.3
Crawford, J.A.4
Brinkley, C.5
Kaper, J.B.6
-
34
-
-
0031806146
-
Acid stress, anaerobiosis, and gadCB: Lessons from Lactococcus lactis and Escherichia coli
-
Small, P.L.C., and Waterman, S.R. (1998) Acid stress, anaerobiosis, and gadCB: lessons from Lactococcus lactis and Escherichia coli. Trends Microbiol 6: 214-216.
-
(1998)
Trends Microbiol
, vol.6
, pp. 214-216
-
-
Small, P.L.C.1
Waterman, S.R.2
-
35
-
-
0026641173
-
Escherichia coli has two homologous glutamate decarboxylase genes that map to distinct loci
-
Smith, D.K., Kassam, T., Singh, B., and Elliott, J.F. (1992) Escherichia coli has two homologous glutamate decarboxylase genes that map to distinct loci. J Bacteriol 174: 5820-5826.
-
(1992)
J Bacteriol
, vol.174
, pp. 5820-5826
-
-
Smith, D.K.1
Kassam, T.2
Singh, B.3
Elliott, J.F.4
-
36
-
-
0036280133
-
Differential regulation of multipte proteins of Escherichia coli and Salmonella enterica serovar Typhimurium by the transcriptional regulator SlyA
-
Spory, A., Bosserhoff, A., von Rhein, C., Goebel, W., and Ludwig, A, (2002) Differential regulation of multipte proteins of Escherichia coli and Salmonella enterica serovar Typhimurium by the transcriptional regulator SlyA. J Bacteriol 184: 3549-3559.
-
(2002)
J Bacteriol
, vol.184
, pp. 3549-3559
-
-
Spory, A.1
Bosserhoff, A.2
Von Rhein, C.3
Goebel, W.4
Ludwig, A.5
-
37
-
-
0025893376
-
Subcellular localization and immunological detection of proteins encoded by the vir locus of Bordetella pertussis
-
Stibitz, S., and Yang, M.S. (1991) Subcellular localization and immunological detection of proteins encoded by the vir locus of Bordetella pertussis. J Bacteriol 173: 4288-4296.
-
(1991)
J Bacteriol
, vol.173
, pp. 4288-4296
-
-
Stibitz, S.1
Yang, M.S.2
-
38
-
-
0027479926
-
Nucleotide sequence of the adi gene, which encodes the biodegradative acid-induced arginine decarboxylase of Escherichia coli
-
Stim, K.P., and Bennett, G.N. (1993) Nucleotide sequence of the adi gene, which encodes the biodegradative acid-induced arginine decarboxylase of Escherichia coli. J Bacteriol 175: 1221-1234.
-
(1993)
J Bacteriol
, vol.175
, pp. 1221-1234
-
-
Stim, K.P.1
Bennett, G.N.2
-
39
-
-
0023571657
-
High-copy-number and low-copy-number plasmid vectors for lacZ α-complementation and chloramphenicol- or kanamycin-resistance selection
-
Takeshita, S., Sato, M., Toba, M., Masahashi, W., and Hashimoto-Gotoh, T. (1987) High-copy-number and low-copy-number plasmid vectors for lacZ α-complementation and chloramphenicol- or kanamycin-resistance selection. Gene 61: 63-74.
-
(1987)
Gene
, vol.61
, pp. 63-74
-
-
Takeshita, S.1
Sato, M.2
Toba, M.3
Masahashi, W.4
Hashimoto-Gotoh, T.5
-
40
-
-
0036237890
-
Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system
-
Tramonti, A., Visca, P., De Canio, M., Falconi, M., and De Biase, D. (2002) Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system. J Bacteriol 184: 2603-2613.
-
(2002)
J Bacteriol
, vol.184
, pp. 2603-2613
-
-
Tramonti, A.1
Visca, P.2
De Canio, M.3
Falconi, M.4
De Biase, D.5
-
41
-
-
0036889029
-
Gene expression profiling of the pH response in Escherichia coli
-
Tucker, D.L., Tucker, N., and Conway, T. (2002) Gene expression profiling of the pH response in Escherichia coli. J Bacteriol 184: 6551-6558.
-
(2002)
J Bacteriol
, vol.184
, pp. 6551-6558
-
-
Tucker, D.L.1
Tucker, N.2
Conway, T.3
-
42
-
-
0028261912
-
Newly identified genes involved in the signal transduction of Escherichia coli K-12
-
Utsumi, R., Katayama, S., Taniguchi, M., Horie, T., Ikeda, M., Igaki, S., et al. (1994) Newly identified genes involved in the signal transduction of Escherichia coli K-12. Gene 140: 73-77.
-
(1994)
Gene
, vol.140
, pp. 73-77
-
-
Utsumi, R.1
Katayama, S.2
Taniguchi, M.3
Horie, T.4
Ikeda, M.5
Igaki, S.6
-
43
-
-
0035369115
-
Histidine kinases and response regulator proteins in two-component signaling systems
-
West, A.H., and Stock, A.M. (2001) Histidine kinases and response regulator proteins in two-component signaling systems. Trends Biochem Sci 26: 369-376.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 369-376
-
-
West, A.H.1
Stock, A.M.2
-
44
-
-
0027447019
-
Function of the Escherichia coli nucleoid protein, H-NS: Molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant
-
Yoshida, T., Ueguchi, C., Yamada, H., and Mizuno, T. (1993a) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant. Mol Gen Genet 237: 113-122.
-
(1993)
Mol Gen Genet
, vol.237
, pp. 113-122
-
-
Yoshida, T.1
Ueguchi, C.2
Yamada, H.3
Mizuno, T.4
-
45
-
-
0027666044
-
Expression of the Escherichia coli dimorphic glutamic acid decarboxylases is regulated by the nucleoid protein H-NS
-
Yoshida, T., Yamashimo, T., Ueguchi, C., and Mizuno, T. (1993b) Expression of the Escherichia coli dimorphic glutamic acid decarboxylases is regulated by the nucleoid protein H-NS. Biosci Biotechnol Biochem 57: 1568-1569.
-
(1993)
Biosci Biotechnol Biochem
, vol.57
, pp. 1568-1569
-
-
Yoshida, T.1
Yamashimo, T.2
Ueguchi, C.3
Mizuno, T.4
-
46
-
-
0027374131
-
Physical map location of a set of Escherichia coli genes (hde) whose expression is affected by the nucleoid protein H-NS
-
Yoshida, T., Ueguchi, C., and Mizuno, T. (1993c) Physical map location of a set of Escherichia coli genes (hde) whose expression is affected by the nucleoid protein H-NS. J Bacteriol 175: 7747-7748.
-
(1993)
J Bacteriol
, vol.175
, pp. 7747-7748
-
-
Yoshida, T.1
Ueguchi, C.2
Mizuno, T.3
|