Structure of a bifunctional alcohol dehydrogenase involved in bioethanol generation in Geobacillus thermoglucosidasius

Acta Crystallographica Section D: Biological Crystallography

Volumn 69, Issue 10, 2013, Pages 2104-2115

  Extance, Jonathan ^a   Crennell, Susan J ^a   Eley, Kirstin ^b   Cripps, Roger ^b   Hough, David W ^a   Danson, Michael J ^a  

^a University of Bath   (United Kingdom)

^b TMO Renewables Ltd   (United Kingdom)

Author keywords

ADH domain; ADHE; bioethanol; Geobacillus thermoglucosidasius

Indexed keywords

ALCOHOL; ALCOHOL DEHYDROGENASE; BIOETHANOL; BIOFUEL; MULTIENZYME COMPLEX;

ADH DOMAIN; ADHE; AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; FERMENTATION; GENETICS; GEOBACILLUS; GEOBACILLUS THERMOGLUCOSIDASIUS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; X RAY CRYSTALLOGRAPHY;

ADH DOMAIN; ADHE; BIOETHANOL; GEOBACILLUS THERMOGLUCOSIDASIUS;

ALCOHOL DEHYDROGENASE; AMINO ACID SEQUENCE; BIOFUELS; CRYSTALLOGRAPHY, X-RAY; ETHANOL; FERMENTATION; GEOBACILLUS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MULTIENZYME COMPLEXES;

EID: 84885460780     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444913020349     Document Type: Article

References (47)

1. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
2. Arnau, J., JØrgensen, F., Madsen, S. M., Vrang, A. & Israelsen, H. (1998). J. Bacteriol. 180, 3049-3055.
3. Asanuma, N., Yoshii, T. & Hino, T. (2004). Arch. Microbiol. 181, 122-128.
4. Atteia, A., van Lis, R., Mendoza-Hernández, G., Henze, K., Martin, W., Riveros-Rosas, H. & González-Halphen, D. (2003). Plant Mol. Biol. 53, 175-188.
5. Braberg, H., Webb, B. M., Tjioe, E., Pieper, U., Sali, A. & Madhusudhan, M. S. (2012). Bioinformatics, 28, 2072-2073.
6. Bradford, M. M. (1976). Anal. Biochem. 72, 248-254.
7. Bruchhaus, I. & Tannich, E. (1994). Biochem. J. 303, 743-748.
8. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
9. Chen, M., Li, E. &stanley, S. L. (2004). Mol. Biochem. Parasitol. 137, 201-205.
10. Comeau, S. R., Gatchell, D. W., Vajda, S. & Camacho, C. J. (2004). Nucleic Acids Res. 32, W96-W99.
11. Cripps, R. E., Eley, K., Leak, D. J., Rudd, B., Taylor, M., Todd, M., Boakes, S., Martin, S. & Atkinson, T. (2009). Metab. Eng. 11, 398-408.
12. Dan, M. & Wang, C. C. (2000). Mol. Biochem. Parasitol. 109, 25-36.
13. Eisenthal, R. & Cornish-Bowden, A. (1974). Biochem. J. 139, 715-720.
14. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
15. Espinosa, A. (2001). J. Biol. Chem. 276, 20136-20143.
16. Espinosa, A., Perdrizet, G., Paz-y-Mino C., G., Lanfranchi, R. & Phay, M. (2009). J. Antimicrob. Chemother. 63, 675-678.
17. Evers, T. H., Appelhof, M. A., Meijer, E. W. & Merkx, M. (2008). Protein Eng. Des. Sel. 21, 529-536.
18. Filipe, V., Hawe, A. & Jiskoot, W. (2010). Pharm. Res. 27, 796-810.
19. Fontaine, L., Meynial-Salles, I., Girbal, L., Yang, X., Croux, C. &soucaille, P. (2002). J. Bacteriol. 184, 821-830.
20. Gouet, P., Courcelle, E., Stuart, D. I. & Métoz, F. (1999). Bioinformatics, 15, 305-308.
21. Kessler, D., Herth,W. & Knappe, J. (1992). J. Biol. Chem. 267, 18073-18079.
22. Kessler, D., Leibrecht, I. & Knappe, J. (1991). FEBS Lett. 281, 59-63.
23. Koo, O. K., Jeong, D.-W., Lee, J. M., Kim, M. J., Lee, J.-H., Chang, H. C., Kim, J. H. & Lee, H. J. (2005). Biotechnol. Lett. 27, 505-510.
24. Krissinel, E. & Henrick, K. (2007). J. Mol. Biol. 372, 774-797.
25. Langer, G., Cohen, S. X., Lamzin, V. S. & Perrakis, A. (2008). Nature Protoc. 3, 1171-1179.
26. Lee, B. & Richards, F. (1971). J. Mol. Biol. 55, 379-400.
27. Long, F., Vagin, A. A., Young, P. & Murshudov, G. N. (2008). Acta Cryst. D64, 125-132.
28. Marçal D., Rêgo, A. T., Carrondo, M. A. & Enguita, F. J. (2009). J. Bacteriol. 191, 1143-1151.
29. Membrillo-Hernandez, J., Echave, P., Cabiscol, E., Tamarit, J., Ros, J. & Lin, E. C. (2000). J. Biol. Chem. 275, 33869-33875.
30. Montella, C., Bellsolell, L., Pérez-Luque, R., Badía, J., Baldoma, L., Coll, M. & Aguilar, J. (2005). J. Bacteriol. 187, 4957-4966.
31. Moon, J.-H., Lee, H.-J., Park, S.-Y., Song, J.-M., Park, M.-Y., Park, H.-M., Sun, J., Park, J.-H., Kim, B. Y. & Kim, J.-S. (2011). J. Mol. Biol. 407, 413-424.
32. Murshudov, G. N., Skubák, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F. & Vagin, A. A. (2011). Acta Cryst. D67, 355-367.
33. Nagi, A. D. & Regan, L. (1997). Fold. Des. 2, 67-75.
34. Otwinowski, Z. & Minor,W. (1997). Methods Enzymol. 276, 307-326.
35. Pei, J., Zhou, Q., Jiang, Y., Le, Y., Li, H., Shao,W. &Wiegel, J. (2010). Metab. Eng. 12, 420-428.
36. Peng, H., Wu, G. &shao, W. (2008). Anaerobe, 14, 125-127.
37. Potterton, E., Briggs, P., Turkenburg, M. & Dodson, E. (2003). Acta Cryst. D59, 1131-1137.
38. Ritchie, D. W. & Kemp, G. J. L. (1999). J. Comput. Chem. 20, 383-395.
39. Rossmann, M. G.,Moras, D. & Olsen, K.W. (1974). Nature (London), 250, 194-199.
40. Russell, R. J., Ferguson, J. M., Hough, D. W., Danson, M. J. & Taylor, G. L. (1997). Biochemistry, 36, 9983-9994.
41. Sali, A. & Blundell, T. L. (1993). J. Mol. Biol. 234, 779-815.
42. Sánchez, L. B. (1998). Arch. Biochem. Biophys. 354, 57-64.
43. Schwarzenbacher, R. et al. (2004). Proteins, 54, 174-177.
44. Shaw, A. J., Jenney, F. E. Jr, Adams, M. W. W. & Lynd, L. R. (2008). Enzyme. Microb. Tech. 42, 453-458.
45. Vieille, C. & Zeikus, G. J. (2001). Microbiol. Mol. Biol. Rev. 65, 1-43.
46. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
47. Zhang, Y.-H. P. (2011). Biotechnol. Adv. 29, 715-725.