메뉴 건너뛰기




Volumn 8, Issue 10, 2013, Pages

Isolation of Novel Afipia septicemium and Identification of Previously Unknown Bacteria Bradyrhizobium sp. OHSU_III from Blood of Patients with Poorly Defined Illnesses

Author keywords

[No Author keywords available]

Indexed keywords

AZITHROMYCIN; GOLD; METHOTREXATE; MINOCYCLINE;

EID: 84885404504     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0076142     Document Type: Article
Times cited : (10)

References (29)
  • 1
    • 80051929350 scopus 로고    scopus 로고
    • Death of a pathology centre: Shelved
    • McCook A, (2011) Death of a pathology centre: Shelved. Nature 476: 270-272 476270a;10.1038/476270a.
    • (2011) Nature , vol.476 , pp. 270-272
    • McCook, A.1
  • 2
    • 0025952631 scopus 로고
    • Recovery from fulminant infection with Mycoplasma fermentans (incognitus strain) in non-immunocompromised host
    • Beecham HJ III, Lo SC, Lewis DE, Comer SW, Riley KJ, et al. (1991) Recovery from fulminant infection with Mycoplasma fermentans (incognitus strain) in non-immunocompromised host. Lancet 338: 1014-1015.
    • (1991) Lancet , vol.338 , pp. 1014-1015
    • Beecham III, H.J.1    Lo, S.C.2    Lewis, D.E.3    Comer, S.W.4    Riley, K.J.5
  • 3
    • 0025718524 scopus 로고
    • Newly discovered mycoplasma isolated from patients infected with HIV
    • 0140-6736(91)92721-D
    • Lo SC, Hayes MM, Wang RY, Pierce PF, Kotani H, et al. (1991) Newly discovered mycoplasma isolated from patients infected with HIV. Lancet 338 1415-1418: 0140-6736(91)92721-D.
    • (1991) Lancet 338 , vol.1415-1418
    • Lo, S.C.1    Hayes, M.M.2    Wang, R.Y.3    Pierce, P.F.4    Kotani, H.5
  • 4
    • 0026441033 scopus 로고
    • High frequency of antibodies to Mycoplasma penetrans in HIV-infected patients
    • 0140-6736(92)92493-Y
    • Wang RY, Shih JW, Grandinetti T, Pierce PF, Hayes MM, et al. (1992) High frequency of antibodies to Mycoplasma penetrans in HIV-infected patients. Lancet 340 1312-1316: 0140-6736(92)92493-Y.
    • (1992) Lancet 340 , vol.1312-1316
    • Wang, R.Y.1    Shih, J.W.2    Grandinetti, T.3    Pierce, P.F.4    Hayes, M.M.5
  • 5
    • 0026774007 scopus 로고
    • Mycoplasma penetrans sp. nov., from the urogenital tract of patients with AIDS
    • Lo SC, Hayes MM, Tully JG, Wang RY, Kotani H, et al. (1992) Mycoplasma penetrans sp. nov., from the urogenital tract of patients with AIDS. Int J Syst Bacteriol 42: 357-364.
    • (1992) Int J Syst Bacteriol , vol.42 , pp. 357-364
    • Lo, S.C.1    Hayes, M.M.2    Tully, J.G.3    Wang, R.Y.4    Kotani, H.5
  • 6
    • 0019473954 scopus 로고
    • A newly discovered mycoplasma in the human urogenital tract
    • Tully JG, Taylor-Robinson D, Cole RM, Rose DL, (1981) A newly discovered mycoplasma in the human urogenital tract. Lancet 1: 1288-1291.
    • (1981) Lancet , vol.1 , pp. 1288-1291
    • Tully, J.G.1    Taylor-Robinson, D.2    Cole, R.M.3    Rose, D.L.4
  • 7
    • 84859583108 scopus 로고    scopus 로고
    • Opportunities and challenges for the integration of massively parallel genomic sequencing into clinical practice: lessons from the ClinSeq project
    • Biesecker LG, (2012) Opportunities and challenges for the integration of massively parallel genomic sequencing into clinical practice: lessons from the ClinSeq project. Genet Med 14: 393-398 gim201178;10.1038/gim.2011.78.
    • (2012) Genet Med , vol.14 , pp. 393-398
    • Biesecker, L.G.1
  • 8
    • 84865231395 scopus 로고    scopus 로고
    • Transforming clinical microbiology with bacterial genome sequencing
    • Didelot X, Bowden R, Wilson DJ, Peto TE, Crook DW, (2012) Transforming clinical microbiology with bacterial genome sequencing. Nat Rev Genet 13: 601-612 nrg3226;10.1038/nrg3226.
    • (2012) Nat Rev Genet , vol.13 , pp. 601-612
    • Didelot, X.1    Bowden, R.2    Wilson, D.J.3    Peto, T.E.4    Crook, D.W.5
  • 10
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599 msm092;10.1093/molbev/msm092.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 11
    • 79959240236 scopus 로고    scopus 로고
    • CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes
    • Galardini M, Biondi EG, Bazzicalupo M, Mengoni A, (2011) CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes. Source Code Biol Med 6: 11 1751-0473-6-11;10.1186/1751-0473-6-11.
    • (2011) Source Code Biol Med , vol.6 , pp. 11
    • Galardini, M.1    Biondi, E.G.2    Bazzicalupo, M.3    Mengoni, A.4
  • 12
    • 77956193448 scopus 로고    scopus 로고
    • progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT, (2010) progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5: e11147 10.1371/journal.pone.0011147.
    • (2010) PLoS One , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 13
    • 0025951320 scopus 로고
    • Proposal of Afipia gen. nov., with Afipia felis sp. nov. (formerly the cat scratch disease bacillus), Afipia clevelandensis sp. nov. (formerly the Cleveland Clinic Foundation strain), Afipia broomeae sp. nov., and three unnamed genospecies
    • Brenner DJ, Hollis DG, Moss CW, English CK, Hall GS, et al. (1991) Proposal of Afipia gen. nov., with Afipia felis sp. nov. (formerly the cat scratch disease bacillus), Afipia clevelandensis sp. nov. (formerly the Cleveland Clinic Foundation strain), Afipia broomeae sp. nov., and three unnamed genospecies. J Clin Microbiol 29: 2450-2460.
    • (1991) J Clin Microbiol , vol.29 , pp. 2450-2460
    • Brenner, D.J.1    Hollis, D.G.2    Moss, C.W.3    English, C.K.4    Hall, G.S.5
  • 14
    • 80052524229 scopus 로고    scopus 로고
    • Genome sequence of the newly isolated chemolithoautotrophic Bradyrhizobiaceae strain SG-6C
    • Pearce SL, Pandey R, Dorrian SJ, Russell RJ, Oakeshott JG, et al. (2011) Genome sequence of the newly isolated chemolithoautotrophic Bradyrhizobiaceae strain SG-6C. J Bacteriol 193: 5057 JB.05647-11;10.1128/JB.05647-11.
    • (2011) J Bacteriol , vol.193 , pp. 5057
    • Pearce, S.L.1    Pandey, R.2    Dorrian, S.J.3    Russell, R.J.4    Oakeshott, J.G.5
  • 15
    • 84885409554 scopus 로고    scopus 로고
    • Available:. Accessed 2013 Sept 4
    • Afipia broomeae ATCC 49717 RefSeq Genome. Available: http://www.ncbi.nlm.nih.gov/bioproject/179398. Accessed 2013 Sept 4.
    • Afipia broomeae ATCC 49717 RefSeq Genome
  • 16
    • 48449095609 scopus 로고    scopus 로고
    • The CGView Server: a comparative genomics tool for circular genomes
    • Grant J, Stothard P, (2008) The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res 36: 181-184.
    • (2008) Nucleic Acids Res , vol.36 , pp. 181-184
    • Grant, J.1    Stothard, P.2
  • 17
    • 84870667817 scopus 로고    scopus 로고
    • Genome sequence of Afipia birgiae, a rare bacterium associated with Amoebae
    • Pagnier I, Croce O, Robert C, Raoult D, La SB, (2012) Genome sequence of Afipia birgiae, a rare bacterium associated with Amoebae. J Bacteriol 194: 7018 194/24/7018;10.1128/JB.01918-12.
    • (2012) J Bacteriol , vol.194 , pp. 7018
    • Pagnier, I.1    Croce, O.2    Robert, C.3    Raoult, D.4    La, S.B.5
  • 18
    • 0036928484 scopus 로고    scopus 로고
    • Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110
    • Kaneko T, Nakamura Y, Sato S, Minamisawa K, Uchiumi T, et al. (2002) Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res 9: 189-197.
    • (2002) DNA Res , vol.9 , pp. 189-197
    • Kaneko, T.1    Nakamura, Y.2    Sato, S.3    Minamisawa, K.4    Uchiumi, T.5
  • 19
    • 9444254183 scopus 로고    scopus 로고
    • The evolution of chronic infection strategies in the alpha-proteobacteria
    • Batut J, Andersson SG, O'Callaghan D, (2004) The evolution of chronic infection strategies in the alpha-proteobacteria. Nat Rev Microbiol 2: 933-945 nrmicro1044;10.1038/nrmicro1044.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 933-945
    • Batut, J.1    Andersson, S.G.2    O'Callaghan, D.3
  • 20
    • 39049089300 scopus 로고    scopus 로고
    • Introduction to the Proteobacteria
    • In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, and Stackebrandt E, editors. New York: New York, Springer
    • Kersters K, Devos P, Gillis M, Swings J, Vandamme P, et al. (2006) Introduction to the Proteobacteria. In The Prokaryotes: A Handbook on the Biology of Bacteria. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, and Stackebrandt E, editors. New York: New York, Springer. pp. 3-37.
    • (2006) The Prokaryotes: A Handbook on the Biology of Bacteria , pp. 3-37
    • Kersters, K.1    Devos, P.2    Gillis, M.3    Swings, J.4    Vandamme, P.5
  • 21
    • 0033709018 scopus 로고    scopus 로고
    • Isolation of new fastidious alpha Proteobacteria and Afipia felis from hospital water supplies by direct plating and amoebal co-culture procedures
    • S0168649600000842
    • La SB, Barrassi L, Raoult D, (2000) Isolation of new fastidious alpha Proteobacteria and Afipia felis from hospital water supplies by direct plating and amoebal co-culture procedures. FEMS Microbiol Ecol 34 129-137: S0168649600000842.
    • (2000) FEMS Microbiol Ecol 34 , vol.129-137
    • La, S.B.1    Barrassi, L.2    Raoult, D.3
  • 22
    • 0016784591 scopus 로고
    • Corn stunt spiroplasma: isolation, cultivation, and proof of pathogenicity
    • Chen TA, Liao CH, (1975) Corn stunt spiroplasma: isolation, cultivation, and proof of pathogenicity. Science 188: 1015-1017 188/4192/1015;10.1126/science.188.4192.1015.
    • (1975) Science , vol.188 , pp. 1015-1017
    • Chen, T.A.1    Liao, C.H.2
  • 23
    • 0016737122 scopus 로고
    • Plant mycoplasmas: a cultivable spiroplasma causes corn stunt disease
    • Williamson DL, Whitcomb RF, (1975) Plant mycoplasmas: a cultivable spiroplasma causes corn stunt disease. Science 188: 1018-1020 188/4192/1018;10.1126/science.188.4192.1018.
    • (1975) Science , vol.188 , pp. 1018-1020
    • Williamson, D.L.1    Whitcomb, R.F.2
  • 24
    • 84959786871 scopus 로고
    • Enhanced isolation of Mycoplasma pneumoniae from throat washings with a newly-modified culture medium
    • Tully JG, Rose DL, Whitcomb RF, Wenzel RP, (1979) Enhanced isolation of Mycoplasma pneumoniae from throat washings with a newly-modified culture medium. J Infect Dis 139: 478-482.
    • (1979) J Infect Dis , vol.139 , pp. 478-482
    • Tully, J.G.1    Rose, D.L.2    Whitcomb, R.F.3    Wenzel, R.P.4
  • 25
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox GE, Wisotzkey JD, Jurtshuk P Jr, (1992) How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol 42: 166-170.
    • (1992) Int J Syst Bacteriol , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk Jr., P.3
  • 26
    • 77956884098 scopus 로고    scopus 로고
    • Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses
    • Yarza P, Ludwig W, Euzeby J, Amann R, Schleifer KH, et al. (2010) Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol 33: 291-299 S0723-2020(10)00102-5;10.1016/j.syapm.2010.08.001.
    • (2010) Syst Appl Microbiol , vol.33 , pp. 291-299
    • Yarza, P.1    Ludwig, W.2    Euzeby, J.3    Amann, R.4    Schleifer, K.H.5
  • 27
    • 0035151510 scopus 로고    scopus 로고
    • Phylogenetic and DNA-DNA hybridization analyses of Bradyrhizobium species
    • Willems A, Coopman R, Gillis M, (2001) Phylogenetic and DNA-DNA hybridization analyses of Bradyrhizobium species. Int J Syst Evol Microbiol 51: 111-117.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 111-117
    • Willems, A.1    Coopman, R.2    Gillis, M.3
  • 28
    • 84864016937 scopus 로고    scopus 로고
    • Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587
    • de Souza JA, Tieppo E, Magnani GS, Alves LM, Cardoso RL, et al. (2012) Draft genome sequence of the nitrogen-fixing symbiotic bacterium Bradyrhizobium elkanii 587. J Bacteriol 194: 3547-3548 194/13/3547;10.1128/JB.00563-12.
    • (2012) J Bacteriol , vol.194 , pp. 3547-3548
    • de Souza, J.A.1    Tieppo, E.2    Magnani, G.S.3    Alves, L.M.4    Cardoso, R.L.5
  • 29
    • 84881260064 scopus 로고    scopus 로고
    • Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome
    • Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, et al. (2013) Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome. New Eng J Med 369: 517-528.
    • (2013) New Eng J Med , vol.369 , pp. 517-528
    • Bhatt, A.S.1    Freeman, S.S.2    Herrera, A.F.3    Pedamallu, C.S.4    Gevers, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.