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Volumn 194, Issue 24, 2012, Pages 7018-

Genome sequence of Afipia birgiae, a rare bacterium associated with amoebae

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RIBOSOME RNA;

EID: 84870667817     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01918-12     Document Type: Article
Times cited : (3)

References (15)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
    • (1997) Nucleic Acids Res. , vol.25
    • Altschul, S.F.1
  • 2
    • 40549120596 scopus 로고    scopus 로고
    • The RAST Server: rapid annotations using subsystems technology
    • doi:10.1186/1471-2164-9-75
    • Aziz RK, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. doi:10.1186/1471-2164-9-75.
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1
  • 3
    • 84862591603 scopus 로고    scopus 로고
    • Toward almost closed genomes with GapFiller
    • Boetzer M, Pirovano W. 2012. Toward almost closed genomes with GapFiller. Genome Biol. 13:R56.
    • (2012) Genome Biol. , vol.13
    • Boetzer, M.1    Pirovano, W.2
  • 4
    • 80955159932 scopus 로고    scopus 로고
    • Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences
    • Gao S, Sung W, Nagarajan N. 2011. Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences. J. Com-put. Biol. 18:1681-1691.
    • (2011) J. Com-put. Biol. , vol.18 , pp. 1681-1691
    • Gao, S.1    Sung, W.2    Nagarajan, N.3
  • 5
    • 77952299957 scopus 로고    scopus 로고
    • Prodigal: prokaryotic gene recognition and translation initiation site identification
    • doi: 10.1186/1471-2105-11-119
    • Hyatt D, et al. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. doi: 10.1186/1471-2105-11-119.
    • (2010) BMC Bioinformatics , vol.11 , pp. 119
    • Hyatt, D.1
  • 6
    • 34250665888 scopus 로고    scopus 로고
    • RNAmmer: consistent and rapid annotation of ribosomal RNA genes
    • Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3100-3108
    • Lagesen, K.1
  • 7
    • 77950403767 scopus 로고    scopus 로고
    • Amoebal pathogens as emerging causal agents of pneumonia
    • Lamoth F, Greub G. 2010. Amoebal pathogens as emerging causal agents of pneumonia. FEMS Microbiol. Rev. 34:260-280.
    • (2010) FEMS Microbiol. Rev. , vol.34 , pp. 260-280
    • Lamoth, F.1    Greub, G.2
  • 8
    • 0033709018 scopus 로고    scopus 로고
    • Isolation of new fastidious alpha Proteobacteria and Afipia felis from hospital water supplies by direct plating and amoebal co-culture procedures
    • La Scola B, Barrassi L, Raoult D. 2000. Isolation of new fastidious alpha Proteobacteria and Afipia felis from hospital water supplies by direct plating and amoebal co-culture procedures. FEMS Microbiol. Ecol. 34:129-137.
    • (2000) FEMS Microbiol. Ecol. , vol.34 , pp. 129-137
    • Scola, B.L.1    Barrassi, L.2    Raoult, D.3
  • 9
    • 0036737844 scopus 로고    scopus 로고
    • Description of Afipia birgiae sp. nov. and Afipia massiliensis sp. nov. and recognition of Afipia felis genospecies A
    • La Scola B, Mallet M, Grimont PAD, Raoult D. 2002. Description of Afipia birgiae sp. nov. and Afipia massiliensis sp. nov. and recognition of Afipia felis genospecies A. Int. J. Syst. Evol. Microbiol. 52:1773-1782.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1773-1782
    • Scola, B.L.1    Mallet, M.2    Grimont, P.A.D.3    Raoult, D.4
  • 10
    • 1242297827 scopus 로고    scopus 로고
    • ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
    • Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32:11-16.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 11-16
    • Laslett, D.1    Canback, B.2
  • 11
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1
  • 12
    • 84858077472 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Punta M, et al. 2012. The Pfam protein families database. Nucleic Acids Res. 40:D290-D301.
    • (2012) Nucleic Acids Res. , vol.40
    • Punta, M.1
  • 13
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov RL, Galperin MY, Natale DA, Koonin EV. 2000. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28:33-36.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 14
    • 0030660581 scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, Lipman DJ. 1977. A genomic perspective on protein families. Science 278:631-637.
    • (1977) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 15
    • 34848876370 scopus 로고    scopus 로고
    • New Afipia and Bosea strains isolated from various water sources by amoebal co-culture
    • Thomas V, Casson N, Greub G. 2007. New Afipia and Bosea strains isolated from various water sources by amoebal co-culture. Syst. Appl. Microbiol. 30:572-579.
    • (2007) Syst. Appl. Microbiol. , vol.30 , pp. 572-579
    • Thomas, V.1    Casson, N.2    Greub, G.3


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