-
1
-
-
0033924053
-
Surface attachment of ammonia-oxidizing bacteria in soil
-
12035099 1:CAS:528:DC%2BD3cXlsFWjsr8%3D
-
Aakra A, Hesselsoe M, Bakken LR (2000) Surface attachment of ammonia-oxidizing bacteria in soil. Microb Ecol 39(3):222-235
-
(2000)
Microb Ecol
, vol.39
, Issue.3
, pp. 222-235
-
-
Aakra, A.1
Hesselsoe, M.2
Bakken, L.R.3
-
2
-
-
0032879040
-
The amo operon in marine, ammonia-oxidizing gamma-proteobacteria
-
10547440 1:CAS:528:DyaK1MXntVCiuro%3D
-
Alzerreca JJ, Norton JM, Klotz MG (1999) The amo operon in marine, ammonia-oxidizing gamma-proteobacteria. FEMS Microbiol Lett 180(1):21-29
-
(1999)
FEMS Microbiol Lett
, vol.180
, Issue.1
, pp. 21-29
-
-
Alzerreca, J.J.1
Norton, J.M.2
Klotz, M.G.3
-
3
-
-
50549085647
-
Recovery and quantification of bacterial cells associated with streambed sediments
-
18602952 10.1016/j.mimet.2008.06.004 1:CAS:528:DC%2BD1cXhtV2jsbfF
-
Amalfitano S, Fazi S (2008) Recovery and quantification of bacterial cells associated with streambed sediments. J Microbiol Methods 75(2):237-243
-
(2008)
J Microbiol Methods
, vol.75
, Issue.2
, pp. 237-243
-
-
Amalfitano, S.1
Fazi, S.2
-
5
-
-
84874541871
-
Global ecological pattern of ammonia-oxidizing archaea
-
doi: 10.1371/journal.pone.0052853
-
Cao H, Auguet J-C, Gu J-D (2013) Global ecological pattern of ammonia-oxidizing archaea. PLoS ONE 8: e52853. doi: 10.1371/journal.pone.0052853
-
(2013)
PLoS ONE
, vol.8
-
-
Cao, H.1
Auguet, J.-C.2
Gu, J.-D.3
-
6
-
-
80054098914
-
Diversity and abundance of ammonia-oxidizing prokaryotes in sediments from the coastal Pearl River estuary to the South China Sea
-
Cao H, Hong Y, Li M, Gu J-D (2011) Diversity and abundance of ammonia-oxidizing prokaryotes in sediments from the coastal Pearl River estuary to the South China Sea. Antonie van Leeuwenhoek 100(4):545-556
-
(2011)
Antonie Van Leeuwenhoek
, vol.100
, Issue.4
, pp. 545-556
-
-
Cao, H.1
Hong, Y.2
Li, M.3
Gu, J.-D.4
-
7
-
-
84858438521
-
Community shift of ammonia-oxidizing bacteria along an anthropogenic pollution gradient from the Pearl River Delta to the South China Sea
-
22005744 10.1007/s00253-011-3636-1 1:CAS:528:DC%2BC38XjvFKku78%3D
-
Cao H, Hong Y, Li M, Gu J-D (2012) Community shift of ammonia-oxidizing bacteria along an anthropogenic pollution gradient from the Pearl River Delta to the South China Sea. Appl Microbiol Biotechnol 94(1):247-259
-
(2012)
Appl Microbiol Biotechnol
, vol.94
, Issue.1
, pp. 247-259
-
-
Cao, H.1
Hong, Y.2
Li, M.3
Gu, J.-D.4
-
8
-
-
79952573590
-
Abundance and community structure of ammonia-oxidizing archaea and bacteria in an acid paddy soil
-
10.1007/s00374-011-0542-8 1:CAS:528:DC%2BC3MXjtVShs7o%3D
-
Chen X, Zhang LM, Shen JP, Wei WX, He JZ (2011) Abundance and community structure of ammonia-oxidizing archaea and bacteria in an acid paddy soil. Biol Fert Soils 47(3):323-331
-
(2011)
Biol Fert Soils
, vol.47
, Issue.3
, pp. 323-331
-
-
Chen, X.1
Zhang, L.M.2
Shen, J.P.3
Wei, W.X.4
He, J.Z.5
-
9
-
-
58149332207
-
Ammonia-oxidizing archaea: Important players in paddy rhizosphere soil?
-
18430011 10.1111/j.1462-2920.2008.01613.x 1:CAS:528:DC%2BD1cXpsFOqtrs%3D
-
Chen XP, Zhu YG, Xia Y, Shen JP, He JZ (2008) Ammonia-oxidizing archaea: important players in paddy rhizosphere soil? Environ Microbiol 10(8):1978-1987
-
(2008)
Environ Microbiol
, vol.10
, Issue.8
, pp. 1978-1987
-
-
Chen, X.P.1
Zhu, Y.G.2
Xia, Y.3
Shen, J.P.4
He, J.Z.5
-
10
-
-
0024558335
-
One-step preparation of competent Escherichia coli: Transformation and storage of bacterial cells in the same solution
-
2648393 10.1073/pnas.86.7.2172 1:CAS:528:DyaL1MXitV2iurY%3D
-
Chung CT, Niemela SL, Miller RH (1989) One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci U S A 86(7):2172-2175
-
(1989)
Proc Natl Acad Sci U S A
, vol.86
, Issue.7
, pp. 2172-2175
-
-
Chung, C.T.1
Niemela, S.L.2
Miller, R.H.3
-
11
-
-
0035206784
-
Quantification of bacterial subgroups in soil: Comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation
-
11553233 10.1046/j.1462-2920.2001.00208.x 1:CAS:528:DC%2BD3MXntVOjs70%3D
-
Courtois S, Frostegard A, Goransson P, Depret G, Jeannin P, Simonet P (2001) Quantification of bacterial subgroups in soil: comparison of DNA extracted directly from soil or from cells previously released by density gradient centrifugation. Environ Microbiol 3(7):431-439
-
(2001)
Environ Microbiol
, vol.3
, Issue.7
, pp. 431-439
-
-
Courtois, S.1
Frostegard, A.2
Goransson, P.3
Depret, G.4
Jeannin, P.5
Simonet, P.6
-
12
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
16186488 10.1073/pnas.0506625102 1:CAS:528:DC%2BD2MXhtFKjsb7J
-
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci U S A 102(41):14683-14688
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.41
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
13
-
-
85056045969
-
Black Box Chimera Check (B2C2): A Windows-based software for batch depletion of chimeras from bacterial 16S rRNA gene datasets
-
21339894 10.2174/1874285801004010047 1:CAS:528:DC%2BC3cXhtVCitbrF
-
Gontcharova V, Youn E, Wolcott RD, Hollister EB, Gentry TJ, Dowd SE (2010) Black Box Chimera Check (B2C2): a Windows-based software for batch depletion of chimeras from bacterial 16S rRNA gene datasets. Open Microbiol J 4:47-52
-
(2010)
Open Microbiol J
, vol.4
, pp. 47-52
-
-
Gontcharova, V.1
Youn, E.2
Wolcott, R.D.3
Hollister, E.B.4
Gentry, T.J.5
Dowd, S.E.6
-
14
-
-
8944232117
-
The pure culture isolation of ammonia-oxidizing bacteria
-
16559981 1:CAS:528:DyaA2sXhtVKisA%3D%3D
-
Hanks JH, Weintraub RL (1936) The pure culture isolation of ammonia-oxidizing bacteria. J Bacteriol 32(6):653-670
-
(1936)
J Bacteriol
, vol.32
, Issue.6
, pp. 653-670
-
-
Hanks, J.H.1
Weintraub, R.L.2
-
15
-
-
79953216030
-
Ammonium availability affects the ratio of ammonia-oxidizing bacteria to ammonia-oxidizing archaea in simulated creek ecosystems
-
21239545 10.1128/AEM.02879-10 1:CAS:528:DC%2BC3MXhtVWktbnP
-
Herrmann M, Scheibe A, Avrahami S, Kusel K (2011) Ammonium availability affects the ratio of ammonia-oxidizing bacteria to ammonia-oxidizing archaea in simulated creek ecosystems. Appl Environ Microbiol 77(5):1896-1899
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.5
, pp. 1896-1899
-
-
Herrmann, M.1
Scheibe, A.2
Avrahami, S.3
Kusel, K.4
-
16
-
-
80051671305
-
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil
-
1:CAS:528:DC%2BC3MXhtVWku7%2FI
-
Holmsgaard PN, Norman A, Hede SC, Poulsen PHB, Abu Al-Soud W, Hansen LH, Sorensen SJ (2011) Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil. Soil Biol Biochem 43(10):2152-2159
-
(2011)
Soil Biol Biochem
, vol.43
, Issue.10
, pp. 2152-2159
-
-
Holmsgaard, P.N.1
Norman, A.2
Hede, S.C.3
Poulsen, P.H.B.4
Abu Al-Soud, W.5
Hansen, L.H.6
Sorensen, S.J.7
-
17
-
-
79952535981
-
Diversity and abundance of anammox bacterial community in the deep-ocean surface sediment from equatorial Pacific
-
20949269 10.1007/s00253-010-2925-4 1:CAS:528:DC%2BC3MXhs1GhsL0%3D
-
Hong YG, Yin B, Zheng TL (2011) Diversity and abundance of anammox bacterial community in the deep-ocean surface sediment from equatorial Pacific. Appl Microbiol Biotechnol 89(4):1233-1241
-
(2011)
Appl Microbiol Biotechnol
, vol.89
, Issue.4
, pp. 1233-1241
-
-
Hong, Y.G.1
Yin, B.2
Zheng, T.L.3
-
18
-
-
84865614961
-
Effect of different ammonia concentrations on community succession of ammonia-oxidizing microorganisms in a simulated paddy soil column
-
10.1371/journal.pone.0044122 1:CAS:528:DC%2BC38XhtlSjs7rE
-
Hu BL, Liu S, Shen L, Zheng P, Xu X, Lou L (2012) Effect of different ammonia concentrations on community succession of ammonia-oxidizing microorganisms in a simulated paddy soil column. PLoS One 7(8):e44122
-
(2012)
PLoS One
, vol.7
, Issue.8
, pp. 44122
-
-
Hu, B.L.1
Liu, S.2
Shen, L.3
Zheng, P.4
Xu, X.5
Lou, L.6
-
19
-
-
79551497912
-
New anaerobic, ammonium-oxidizing community enriched from peat soil
-
21148690 10.1128/AEM.02402-10 1:CAS:528:DC%2BC3MXisVOrurc%3D
-
Hu BL, Rush D, van der Biezen E, Zheng P, van Mullekom M, Schouten S, Sinninghe Damste JS, Smolders AJ, Jetten MS, Kartal B (2011) New anaerobic, ammonium-oxidizing community enriched from peat soil. Appl Environ Microbiol 77(3):966-971
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.3
, pp. 966-971
-
-
Hu, B.L.1
Rush, D.2
Van Der Biezen, E.3
Zheng, P.4
Van Mullekom, M.5
Schouten, S.6
Sinninghe Damste, J.S.7
Smolders, A.J.8
Jetten, M.S.9
Kartal, B.10
-
20
-
-
73349110436
-
Development of a bacterial cell enrichment method and its application to the community analysis in soybean stems
-
19662454 10.1007/s00248-009-9566-0 1:CAS:528:DC%2BD1MXhtlKitLbF
-
Ikeda S, Kaneko T, Okubo T, Rallos LE, Eda S, Mitsui H, Sato S, Nakamura Y, Tabata S, Minamisawa K (2009) Development of a bacterial cell enrichment method and its application to the community analysis in soybean stems. Microb Ecol 58(4):703-714
-
(2009)
Microb Ecol
, vol.58
, Issue.4
, pp. 703-714
-
-
Ikeda, S.1
Kaneko, T.2
Okubo, T.3
Rallos, L.E.4
Eda, S.5
Mitsui, H.6
Sato, S.7
Nakamura, Y.8
Tabata, S.9
Minamisawa, K.10
-
21
-
-
33845714911
-
Candidatus "anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria
-
16644170 10.1016/j.syapm.2006.03.004 1:CAS:528:DC%2BD2sXjt1SntLc%3D
-
Kartal B, Rattray J, van Niftrik LA, van de Vossenberg J, Schmid MC, Webb RI, Schouten S, Fuerst JA, Damste JS, Jetten MS, Strous M (2007) Candidatus "Anammoxoglobus propionicus" a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. Syst Appl Microbiol 30(1):39-49
-
(2007)
Syst Appl Microbiol
, vol.30
, Issue.1
, pp. 39-49
-
-
Kartal, B.1
Rattray, J.2
Van Niftrik, L.A.3
Van De Vossenberg, J.4
Schmid, M.C.5
Webb, R.I.6
Schouten, S.7
Fuerst, J.A.8
Damste, J.S.9
Jetten, M.S.10
Strous, M.11
-
22
-
-
36849017908
-
Candidatus 'Brocadia fulgida': An autofluorescent anaerobic ammonium oxidizing bacterium
-
18081590 10.1111/j.1574-6941.2007.00408.x 1:CAS:528:DC%2BD1cXhvVOnurc%3D
-
Kartal B, van Niftrik L, Rattray J, van de Vossenberg JL, Schmid MC, Sinninghe Damste J, Jetten MS, Strous M (2008) Candidatus 'Brocadia fulgida': an autofluorescent anaerobic ammonium oxidizing bacterium. FEMS Microbiology Ecology 63(1):46-55
-
(2008)
FEMS Microbiology Ecology
, vol.63
, Issue.1
, pp. 46-55
-
-
Kartal, B.1
Van Niftrik, L.2
Rattray, J.3
Van De Vossenberg, J.L.4
Schmid, M.C.5
Sinninghe Damste, J.6
Jetten, M.S.7
Strous, M.8
-
23
-
-
84881233786
-
Niche differentiation of ammonia oxidizers and nitrite oxidizers in rice paddy soil
-
10.1111/1462-2920.12098 23437806
-
Ke X, Angel R, Lu Y, Conrad R (2013) Niche differentiation of ammonia oxidizers and nitrite oxidizers in rice paddy soil. Environ Microbiol. doi: 10.1111/1462-2920.12098
-
(2013)
Environ Microbiol
-
-
Ke, X.1
Angel, R.2
Lu, Y.3
Conrad, R.4
-
24
-
-
84862822281
-
Adaptation of ammonia-oxidizing microorganisms to environment shift of paddy field soil
-
22145990 10.1111/j.1574-6941.2011.01271.x 1:CAS:528:DC%2BC38XltFSmtbk%3D
-
Ke X, Lu Y (2012) Adaptation of ammonia-oxidizing microorganisms to environment shift of paddy field soil. FEMS Microbiol Ecol 80(1):87-97
-
(2012)
FEMS Microbiol Ecol
, vol.80
, Issue.1
, pp. 87-97
-
-
Ke, X.1
Lu, Y.2
-
25
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
16177789 10.1038/nature03911
-
Konneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, Stahl DA (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437(7058):543-546
-
(2005)
Nature
, vol.437
, Issue.7058
, pp. 543-546
-
-
Konneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
26
-
-
0034775280
-
Ammonia-oxidizing bacteria: A model for molecular microbial ecology
-
11544365 10.1146/annurev.micro.55.1.485 1:CAS:528:DC%2BD3MXnslKjtLs%3D
-
Kowalchuk GA, Stephen JR (2001) Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55:485-529
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
27
-
-
77951623596
-
Co-existence of anammox and denitrification for simultaneous nitrogen and carbon removal - Strategies and issues
-
20138428 10.1016/j.jhazmat.2010.01.077 1:CAS:528:DC%2BC3cXksV2qt74%3D
-
Kumar M, Lin JG (2010) Co-existence of anammox and denitrification for simultaneous nitrogen and carbon removal - strategies and issues. J Hazard Mater 178(1-3):1-9
-
(2010)
J Hazard Mater
, vol.178
, Issue.1-3
, pp. 1-9
-
-
Kumar, M.1
Lin, J.G.2
-
28
-
-
0242515747
-
Anaerobic ammonium oxidation by anammox bacteria in the Black Sea
-
12686999 10.1038/nature01472 1:CAS:528:DC%2BD3sXislCgt7Y%3D
-
Kuypers MM, Sliekers AO, Lavik G, Schmid M, Jorgensen BB, Kuenen JG, Sinninghe Damste JS, Strous M, Jetten MS (2003) Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature 422(6932):608-611
-
(2003)
Nature
, vol.422
, Issue.6932
, pp. 608-611
-
-
Kuypers, M.M.1
Sliekers, A.O.2
Lavik, G.3
Schmid, M.4
Jorgensen, B.B.5
Kuenen, J.G.6
Sinninghe Damste, J.S.7
Strous, M.8
Jetten, M.S.9
-
29
-
-
80053158633
-
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil
-
21896746 10.1073/pnas.1107196108 1:CAS:528:DC%2BC3MXht1emtbzK
-
Lehtovirta-Morley LE, Stoecker K, Vilcinskas A, Prosser JI, Nicol GW (2011) Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil. Proc Natl Acad Sci U S A 108(38):15892-15897
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.38
, pp. 15892-15897
-
-
Lehtovirta-Morley, L.E.1
Stoecker, K.2
Vilcinskas, A.3
Prosser, J.I.4
Nicol, G.W.5
-
30
-
-
33747479446
-
Archaea predominate among ammonia-oxidizing prokaryotes in soils
-
16915287 10.1038/nature04983 1:CAS:528:DC%2BD28XotFKmtrs%3D
-
Leininger S, Urich T, Schloter M, Schwark L, Qi J, Nicol GW, Prosser JI, Schuster SC, Schleper C (2006) Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442(7104):806-809
-
(2006)
Nature
, vol.442
, Issue.7104
, pp. 806-809
-
-
Leininger, S.1
Urich, T.2
Schloter, M.3
Schwark, L.4
Qi, J.5
Nicol, G.W.6
Prosser, J.I.7
Schuster, S.C.8
Schleper, C.9
-
31
-
-
79952532923
-
Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments
-
20953601 10.1007/s00253-010-2929-0 1:CAS:528:DC%2BC3MXhs1GhsLo%3D
-
Li M, Cao H, Hong Y, Gu J-D (2011a) Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments. Appl Microbiol Biotechnol 89(4):1243-1254
-
(2011)
Appl Microbiol Biotechnol
, vol.89
, Issue.4
, pp. 1243-1254
-
-
Li, M.1
Cao, H.2
Hong, Y.3
Gu, J.-D.4
-
32
-
-
79952996497
-
Seasonal dynamics of anammox bacteria in estuarial sediment of the Mai Po Nature Reserve revealed by analyzing the 16S rRNA and hydrazine oxidoreductase (hzo) genes
-
21487198 10.1264/jsme2.ME10131 1:CAS:528:DC%2BC3MXhsVCru7nP
-
Li M, Cao H, Hong YG, Gu J-D (2011b) Seasonal dynamics of anammox bacteria in estuarial sediment of the Mai Po Nature Reserve revealed by analyzing the 16S rRNA and hydrazine oxidoreductase (hzo) genes. Microbes Environ 26(1):15-22
-
(2011)
Microbes Environ
, vol.26
, Issue.1
, pp. 15-22
-
-
Li, M.1
Cao, H.2
Hong, Y.G.3
Gu, J.-D.4
-
33
-
-
78651338362
-
An improved method for extracting bacteria from soil for high molecular weight DNA recovery and BAC library construction
-
21221926 10.1007/s12275-010-0139-1 1:CAS:528:DC%2BC3MXkt1ajtw%3D%3D
-
Liu J, Li J, Feng L, Cao H, Cui Z (2010) An improved method for extracting bacteria from soil for high molecular weight DNA recovery and BAC library construction. J Microbiol 48(6):728-733
-
(2010)
J Microbiol
, vol.48
, Issue.6
, pp. 728-733
-
-
Liu, J.1
Li, J.2
Feng, L.3
Cao, H.4
Cui, Z.5
-
34
-
-
84885380338
-
Study on physical characteristics of planosol III. Microstructure and porosity features
-
Liu TT, Gao ZC, Kuang EJ, Liu F. (2012) Study on physical characteristics of planosol III. Microstructure and porosity features. Heilongjiang Agricultural Sciences (6):45-48
-
(2012)
Heilongjiang Agricultural Sciences
, Issue.6
, pp. 45-48
-
-
Liu, T.T.1
Gao, Z.C.2
Kuang, E.J.3
Liu, F.4
-
35
-
-
84871905021
-
Co-occurring anammox, denitrification, and codenitrification in agricultural soils
-
23087029 10.1128/AEM.02520-12 1:CAS:528:DC%2BC3sXkvVKjsLo%3D
-
Long A, Heitman J, Tobias C, Philips R, Song B (2013) Co-occurring anammox, denitrification, and codenitrification in agricultural soils. Appl Environ Microbiol 79(1):168-176
-
(2013)
Appl Environ Microbiol
, vol.79
, Issue.1
, pp. 168-176
-
-
Long, A.1
Heitman, J.2
Tobias, C.3
Philips, R.4
Song, B.5
-
36
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
16332807 10.1128/AEM.71.12.8228-8235.2005 1:CAS:528:DC%2BD2MXhtlehtb7K
-
Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71(12):8228-8235
-
(2005)
Appl Environ Microbiol
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
37
-
-
84867744801
-
Nitrification of archaeal ammonia oxidizers in acid soils is supported by hydrolysis of urea
-
22592820 10.1038/ismej.2012.45 1:CAS:528:DC%2BC38Xhtlynt7rO
-
Lu L, Han W, Zhang J, Wu Y, Wang B, Lin X, Zhu J, Cai Z, Jia Z (2012) Nitrification of archaeal ammonia oxidizers in acid soils is supported by hydrolysis of urea. ISME J 6(10):1978-1984
-
(2012)
ISME J
, vol.6
, Issue.10
, pp. 1978-1984
-
-
Lu, L.1
Han, W.2
Zhang, J.3
Wu, Y.4
Wang, B.5
Lin, X.6
Zhu, J.7
Cai, Z.8
Jia, Z.9
-
38
-
-
34247847886
-
Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
-
17472632 10.1111/j.1462-2920.2007.01239.x 1:CAS:528:DC%2BD2sXlsFWntbY%3D
-
Mincer TJ, Church MJ, Taylor LT, Preston C, Karl DM, DeLong EF (2007) Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ Microbiol 9(5):1162-1175
-
(2007)
Environ Microbiol
, vol.9
, Issue.5
, pp. 1162-1175
-
-
Mincer, T.J.1
Church, M.J.2
Taylor, L.T.3
Preston, C.4
Karl, D.M.5
Delong, E.F.6
-
39
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
7683183 1:CAS:528:DyaK3sXit1Kktrk%3D
-
Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59(3):695-700
-
(1993)
Appl Environ Microbiol
, vol.59
, Issue.3
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
40
-
-
79958106145
-
Physiological characteristics of the anaerobic ammonium-oxidizing bacterium 'Candidatus Brocadia sinica'
-
21474538 10.1099/mic.0.048595-0 1:CAS:528:DC%2BC3MXosVSlsbY%3D
-
Oshiki M, Shimokawa M, Fujii N, Satoh H, Okabe S (2011) Physiological characteristics of the anaerobic ammonium-oxidizing bacterium 'Candidatus Brocadia sinica'. Microbiology 157(Pt 6):1706-1713
-
(2011)
Microbiology
, vol.157
, Issue.PART 6
, pp. 1706-1713
-
-
Oshiki, M.1
Shimokawa, M.2
Fujii, N.3
Satoh, H.4
Okabe, S.5
-
41
-
-
33750042897
-
Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments
-
17021238 10.1128/AEM.01254-06 1:CAS:528:DC%2BD28XhtFalsLbN
-
Penton CR, Devol AH, Tiedje JM (2006) Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments. Appl Environ Microbiol 72(10):6829-6832
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.10
, pp. 6829-6832
-
-
Penton, C.R.1
Devol, A.H.2
Tiedje, J.M.3
-
42
-
-
0034466757
-
Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
-
11097916 10.1128/AEM.66.12.5368-5382.2000 1:CAS:528:DC%2BD3MXjsVygsro%3D
-
Purkhold U, Pommerening-Roser A, Juretschko S, Schmid MC, Koops HP, Wagner M (2000) Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66(12):5368-5382
-
(2000)
Appl Environ Microbiol
, vol.66
, Issue.12
, pp. 5368-5382
-
-
Purkhold, U.1
Pommerening-Roser, A.2
Juretschko, S.3
Schmid, M.C.4
Koops, H.P.5
Wagner, M.6
-
43
-
-
52949144536
-
Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor
-
18479446 10.1111/j.1462-2920.2008.01642.x 1:CAS:528:DC%2BD1cXhtlGitrfP
-
Quan ZX, Rhee SK, Zuo JE, Yang Y, Bae JW, Park JR, Lee ST, Park YH (2008) Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor. Environ Microbiol 10(11):3130-3139
-
(2008)
Environ Microbiol
, vol.10
, Issue.11
, pp. 3130-3139
-
-
Quan, Z.X.1
Rhee, S.K.2
Zuo, J.E.3
Yang, Y.4
Bae, J.W.5
Park, J.R.6
Lee, S.T.7
Park, Y.H.8
-
44
-
-
0030814870
-
The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
-
9406389 1:CAS:528:DyaK2sXnvV2rtr0%3D
-
Rotthauwe JH, Witzel KP, Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63(12):4704-4712
-
(1997)
Appl Environ Microbiol
, vol.63
, Issue.12
, pp. 4704-4712
-
-
Rotthauwe, J.H.1
Witzel, K.P.2
Liesack, W.3
-
45
-
-
78049432317
-
Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current
-
20345944 10.1111/j.1462-2920.2010.02205.x 1:CAS:528:DC%2BC3cXhtVegsLnF
-
Santoro AE, Casciotti KL, Francis CA (2010) Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current. Environ Microbiol 12(7):1989-2006
-
(2010)
Environ Microbiol
, vol.12
, Issue.7
, pp. 1989-2006
-
-
Santoro, A.E.1
Casciotti, K.L.2
Francis, C.A.3
-
46
-
-
84867880366
-
Detection of anammox activity and 16S rRNA genes in ravine paddy field soil
-
22353769 10.1264/jsme2.ME11330
-
Sato Y, Ohta H, Yamagishi T, Guo Y, Nishizawa T, Rahman MH, Kuroda H, Kato T, Saito M, Yoshinaga I, Inubushi K, Suwa Y (2012) Detection of anammox activity and 16S rRNA genes in ravine paddy field soil. Microbes Environ 27(3):316-319
-
(2012)
Microbes Environ
, vol.27
, Issue.3
, pp. 316-319
-
-
Sato, Y.1
Ohta, H.2
Yamagishi, T.3
Guo, Y.4
Nishizawa, T.5
Rahman, M.H.6
Kuroda, H.7
Kato, T.8
Saito, M.9
Yoshinaga, I.10
Inubushi, K.11
Suwa, Y.12
-
47
-
-
0034096495
-
Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation
-
10879983 10.1016/S0723-2020(00)80050-8 1:CAS:528:DC%2BD3cXksFShsbY%3D
-
Schmid M, Twachtmann U, Klein M, Strous M, Juretschko S, Jetten M, Metzger JW, Schleifer KH, Wagner M (2000) Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation. Syst Appl Microbiol 23(1):93-106
-
(2000)
Syst Appl Microbiol
, vol.23
, Issue.1
, pp. 93-106
-
-
Schmid, M.1
Twachtmann, U.2
Klein, M.3
Strous, M.4
Juretschko, S.5
Jetten, M.6
Metzger, J.W.7
Schleifer, K.H.8
Wagner, M.9
-
48
-
-
10744230197
-
Candidatus "scalindua brodae", sp. nov., Candidatus "scalindua wagneri", sp. nov., two new species of anaerobic ammonium oxidizing bacteria
-
14666981 10.1078/072320203770865837 1:CAS:528:DC%2BD2cXls1OltQ%3D%3D
-
Schmid M, Walsh K, Webb R, Rijpstra WI, van de Pas-Schoonen K, Verbruggen MJ, Hill T, Moffett B, Fuerst J, Schouten S, Damste JS, Harris J, Shaw P, Jetten M, Strous M (2003) Candidatus "Scalindua brodae", sp. nov., Candidatus "Scalindua wagneri", sp. nov., two new species of anaerobic ammonium oxidizing bacteria. Syst Appl Microbiol 26(4):529-538
-
(2003)
Syst Appl Microbiol
, vol.26
, Issue.4
, pp. 529-538
-
-
Schmid, M.1
Walsh, K.2
Webb, R.3
Rijpstra, W.I.4
Van De Pas-Schoonen, K.5
Verbruggen, M.J.6
Hill, T.7
Moffett, B.8
Fuerst, J.9
Schouten, S.10
Damste, J.S.11
Harris, J.12
Shaw, P.13
Jetten, M.14
Strous, M.15
-
49
-
-
33645741019
-
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
-
16598256 10.1038/nature04647
-
Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, Taylor MW, Horn M, Daims H, Bartol-Mavel D, Wincker P, Barbe V, Fonknechten N, Vallenet D, Segurens B, Schenowitz-Truong C, Medigue C, Collingro A, Snel B, Dutilh BE, Op den Camp HJ, van der Drift C, Cirpus I, van de Pas-Schoonen KT, Harhangi HR, van Niftrik L, Schmid M, Keltjens J, van de Vossenberg J, Kartal B, Meier H, Frishman D, Huynen MA, Mewes HW, Weissenbach J, Jetten MS, Wagner M, Le Paslier D (2006) Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440(7085):790-794
-
(2006)
Nature
, vol.440
, Issue.7085
, pp. 790-794
-
-
Strous, M.1
Pelletier, E.2
Mangenot, S.3
Rattei, T.4
Lehner, A.5
Taylor, M.W.6
Horn, M.7
Daims, H.8
Bartol-Mavel, D.9
Wincker, P.10
Barbe, V.11
Fonknechten, N.12
Vallenet, D.13
Segurens, B.14
Schenowitz-Truong, C.15
Medigue, C.16
Collingro, A.17
Snel, B.18
Dutilh, B.E.19
Op Den Camp, H.J.20
Van Der Drift, C.21
Cirpus, I.22
Van De Pas-Schoonen, K.T.23
Harhangi, H.R.24
Van Niftrik, L.25
Schmid, M.26
Keltjens, J.27
Van De Vossenberg, J.28
Kartal, B.29
Meier, H.30
Frishman, D.31
Huynen, M.A.32
Mewes, H.W.33
Weissenbach, J.34
Jetten, M.S.35
Wagner, M.36
Le Paslier, D.37
more..
-
50
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
21546353 10.1093/molbev/msr121 1:CAS:528:DC%2BC3MXht1eiu73K
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731-2739
-
(2011)
Mol Biol Evol
, vol.28
, Issue.10
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
51
-
-
0028935825
-
Anaerobic oxidation of ammonium is a biologically mediated process
-
7747947
-
van de Graaf AA, Mulder A, de Bruijn P, Jetten MS, Robertson LA, Kuenen JG (1995) Anaerobic oxidation of ammonium is a biologically mediated process. Appl Environ Microbiol 61(4):1246-1251
-
(1995)
Appl Environ Microbiol
, vol.61
, Issue.4
, pp. 1246-1251
-
-
Van De Graaf, A.A.1
Mulder, A.2
De Bruijn, P.3
Jetten, M.S.4
Robertson, L.A.5
Kuenen, J.G.6
-
52
-
-
52949118049
-
Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production
-
18462401 10.1111/j.1462-2920.2008.01643.x
-
van de Vossenberg J, Rattray JE, Geerts W, Kartal B, van Niftrik L, van Donselaar EG, Sinninghe Damste JS, Strous M, Jetten MS (2008) Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production. Environ Microbiol 10(11):3120-3129
-
(2008)
Environ Microbiol
, vol.10
, Issue.11
, pp. 3120-3129
-
-
Van De Vossenberg, J.1
Rattray, J.E.2
Geerts, W.3
Kartal, B.4
Van Niftrik, L.5
Van Donselaar, E.G.6
Sinninghe Damste, J.S.7
Strous, M.8
Jetten, M.S.9
-
54
-
-
84874354885
-
Dominance of Candidatus Scalindua species in anammox community revealed in soils with different duration of rice paddy cultivation in Northeast China
-
22526793 10.1007/s00253-012-4036-x 1:CAS:528:DC%2BC3sXhvFGhurs%3D
-
Wang J, Gu J-D (2013) Dominance of Candidatus Scalindua species in anammox community revealed in soils with different duration of rice paddy cultivation in Northeast China. Appl Microbiol Biotechnol 97(4):1785-1798
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, Issue.4
, pp. 1785-1798
-
-
Wang, J.1
Gu, J.-D.2
-
55
-
-
84892369224
-
Seasonal dynamics of ammonia/ammonium-oxidizing prokaryotes in oxic and anoxic wetland sediments of subtropical coastal mangrove
-
10.1007/s00253-012-4510-5
-
Wang YF, Feng YY, Ma X, Gu J-D (2012) Seasonal dynamics of ammonia/ammonium-oxidizing prokaryotes in oxic and anoxic wetland sediments of subtropical coastal mangrove. Appl Microbiol Biotechnol. doi: 10.1007/s00253-012-4510-5
-
(2012)
Appl Microbiol Biotechnol
-
-
Wang, Y.F.1
Feng, Y.Y.2
Ma, X.3
Gu, J.-D.4
-
56
-
-
0029668450
-
Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
-
8975607 1:CAS:528:DyaK28XhsVWru7c%3D
-
Weidner S, Arnold W, Puhler A (1996) Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl Environ Microbiol 62(3):766-771
-
(1996)
Appl Environ Microbiol
, vol.62
, Issue.3
, pp. 766-771
-
-
Weidner, S.1
Arnold, W.2
Puhler, A.3
-
57
-
-
79959596861
-
Autotrophic growth of nitrifying community in an agricultural soil
-
21326337 10.1038/ismej.2011.5 1:CAS:528:DC%2BC3MXnvVaqsLs%3D
-
Xia W, Zhang C, Zeng X, Feng Y, Weng J, Lin X, Zhu J, Xiong Z, Xu J, Cai Z, Jia Z (2011) Autotrophic growth of nitrifying community in an agricultural soil. ISME J 5(7):1226-1236
-
(2011)
ISME J
, vol.5
, Issue.7
, pp. 1226-1236
-
-
Xia, W.1
Zhang, C.2
Zeng, X.3
Feng, Y.4
Weng, J.5
Lin, X.6
Zhu, J.7
Xiong, Z.8
Xu, J.9
Cai, Z.10
Jia, Z.11
-
58
-
-
84874372449
-
Pedogenetic characteristics of albic soils in the Three River Plain, Heilongjiang province
-
Xing BS, Dudas MJ, Zhang ZY, Xu Q (1994) Pedogenetic characteristics of albic soils in the Three River Plain, Heilongjiang province. Acta Pedologica Sinica 31:95-104
-
(1994)
Acta Pedologica Sinica
, vol.31
, pp. 95-104
-
-
Xing, B.S.1
Dudas, M.J.2
Zhang, Z.Y.3
Xu, Q.4
-
59
-
-
80052352490
-
Relative contributions of archaea and bacteria to microbial ammonia oxidation differ under different conditions during agricultural waste composting
-
21843932 10.1016/j.biortech.2011.07.076 1:CAS:528:DC%2BC3MXhtV2qtL7F
-
Zeng G, Zhang J, Chen Y, Yu Z, Yu M, Li H, Liu Z, Chen M, Lu L, Hu C (2011) Relative contributions of archaea and bacteria to microbial ammonia oxidation differ under different conditions during agricultural waste composting. Bioresour Technol 102(19):9026-9032
-
(2011)
Bioresour Technol
, vol.102
, Issue.19
, pp. 9026-9032
-
-
Zeng, G.1
Zhang, J.2
Chen, Y.3
Yu, Z.4
Yu, M.5
Li, H.6
Liu, Z.7
Chen, M.8
Lu, L.9
Hu, C.10
-
60
-
-
81855194039
-
Anaerobic ammonia oxidation in a fertilized paddy soil
-
21593796 10.1038/ismej.2011.63 1:CAS:528:DC%2BC3MXhsV2isLvN
-
Zhu G, Wang S, Wang Y, Wang C, Risgaard-Petersen N, Jetten MS, Yin C (2011) Anaerobic ammonia oxidation in a fertilized paddy soil. ISME J 5(12):1905-1912
-
(2011)
ISME J
, vol.5
, Issue.12
, pp. 1905-1912
-
-
Zhu, G.1
Wang, S.2
Wang, Y.3
Wang, C.4
Risgaard-Petersen, N.5
Jetten, M.S.6
Yin, C.7
|