메뉴 건너뛰기




Volumn 4, Issue JUL, 2013, Pages

Community composition of ammonia-oxidizing archaea from surface and anoxic depths of oceanic oxygen minimum zones

Author keywords

Ammonia Oxidizing archaea; Arabian sea; Community composition; Eastern Tropical South Pacific; Oxygen minimum zone; QPCR

Indexed keywords

DISSOLVED OXYGEN; SURFACE WATER;

EID: 84885342987     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2013.00177     Document Type: Article
Times cited : (42)

References (54)
  • 1
    • 57649114800 scopus 로고    scopus 로고
    • Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
    • doi: 10.1038/nature07535
    • Agogue, H., Brink, M., Dinasquet, J., and Herndl, G. J. (2008). Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456, 788-791. doi: 10.1038/nature07535
    • (2008) Nature , vol.456 , pp. 788-791
    • Agogue, H.1    Brink, M.2    Dinasquet, J.3    Herndl, G.J.4
  • 2
    • 33845520639 scopus 로고    scopus 로고
    • Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hyper nutrified subtropical estuary: Bahia del Tobari, Mexico
    • doi: 10.1128/AEM.00946-06
    • Beman, J. M., and Francis, C. A. (2006). Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hyper nutrified subtropical estuary: Bahia del Tobari, Mexico. Appl. Environ. Microbiol. 72(12), 7767-7777. doi: 10.1128/AEM.00946-06
    • (2006) Appl. Environ. Microbiol. , vol.72 , Issue.12 , pp. 7767-7777
    • Beman, J.M.1    Francis, C.A.2
  • 3
    • 42049122119 scopus 로고    scopus 로고
    • Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
    • doi: 10.1038/ismej.2007.118
    • Beman, J. M., Popp, B. N., and Francis, C. A. (2008). Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J. 2, 429-441. doi: 10.1038/ismej.2007.118
    • (2008) ISME J. , vol.2 , pp. 429-441
    • Beman, J.M.1    Popp, B.N.2    Francis, C.A.3
  • 4
    • 84874550637 scopus 로고    scopus 로고
    • Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat
    • doi: 10.3389/fmicb.2012.00252
    • Biller, S. J., Mosier, A. C., Wells, G. F., and Francis, C. A. (2012). Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat. Front. Aquat. Microbiol. 3:252. doi: 10.3389/fmicb.2012.00252
    • (2012) Front. Aquat. Microbiol. , vol.3 , pp. 252
    • Biller, S.J.1    Mosier, A.C.2    Wells, G.F.3    Francis, C.A.4
  • 5
    • 84857922921 scopus 로고    scopus 로고
    • Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments
    • doi: 10.1111/j.1462-2920.2011.02623.x
    • Bouskill, N. J., Eveillard, D., Chien, D., Jayakumar, A., and Ward, B. B. (2012). Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments. Environ. Microbiol. 14, 714-729. doi: 10.1111/j.1462-2920.2011.02623.x
    • (2012) Environ. Microbiol. , vol.14 , pp. 714-729
    • Bouskill, N.J.1    Eveillard, D.2    Chien, D.3    Jayakumar, A.4    Ward, B.B.5
  • 7
    • 52949152827 scopus 로고    scopus 로고
    • Sediment denitrifier community composition and nirS gene expression investigated with functional gene microarrays
    • doi: 10.1111/j.1462-2920.2008.01765.x
    • Bulow, S. E., Francis, C. A., Jackson, G. A., and Ward, B. B. (2008). Sediment denitrifier community composition and nirS gene expression investigated with functional gene microarrays. Environ. Microbiol. 10, 3057-3069. doi: 10.1111/j.1462-2920.2008.01765.x
    • (2008) Environ. Microbiol. , vol.10 , pp. 3057-3069
    • Bulow, S.E.1    Francis, C.A.2    Jackson, G.A.3    Ward, B.B.4
  • 8
    • 84874541871 scopus 로고    scopus 로고
    • Global ecological pattern of ammonia-oxidizing archaea
    • doi: 10.1371/journal.pone.0052853
    • Cao, H., Auguet, J., and Gu, J. (2013). Global ecological pattern of ammonia-oxidizing archaea. PLoS ONE 8:e52853. doi: 10.1371/journal.pone.0052853
    • (2013) PLoS ONE , vol.8
    • Cao, H.1    Auguet, J.2    Gu, J.3
  • 9
    • 33947110858 scopus 로고    scopus 로고
    • Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids
    • doi: 10.1111/j.1462-2920.2006.01227.x
    • Coolen, M. J. L., Abbas, B., van Bleijswijk, J., Hopmans, E. C., Kuypers, M. M. M., Wakeham, S. G., et al. (2007). Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ. Microbiol. 9, 1001-1016. doi: 10.1111/j.1462-2920.2006.01227.x
    • (2007) Environ. Microbiol. , vol.9 , pp. 1001-1016
    • Coolen, M.J.L.1    Abbas, B.2    van Bleijswijk, J.3    Hopmans, E.C.4    Kuypers, M.M.M.5    Wakeham, S.G.6
  • 10
    • 84885336148 scopus 로고    scopus 로고
    • "The effects of oxygen on process rates and gene expression of anammox and denitrification in the Eastern South Pacific oxygen minimum zone
    • (New Orleans, LA) abstract ID: 10879
    • Dalsgaard, T., Stewart, F. J., De Brabandere, L., Thamdrup, B., Revsbech, N. P., Canfield, D. E., et al. (2013). "The effects of oxygen on process rates and gene expression of anammox and denitrification in the Eastern South Pacific oxygen minimum zone," in ASLO 2013 Aquatic Sciences Meeting, (New Orleans, LA) abstract ID: 10879.
    • (2013) ASLO 2013 Aquatic Sciences Meeting
    • Dalsgaard, T.1    Stewart, F.J.2    De Brabandere, L.3    Thamdrup, B.4    Revsbech, N.P.5    Canfield, D.E.6
  • 11
    • 0018730120 scopus 로고
    • Particulate organic matter flux and planktonic new production in the deep ocean
    • doi: 10.1038/282677a0
    • Eppley, R. W., and Peterson, B. J. (1979). Particulate organic matter flux and planktonic new production in the deep ocean. Nature 282, 677-680. doi: 10.1038/282677a0
    • (1979) Nature , vol.282 , pp. 677-680
    • Eppley, R.W.1    Peterson, B.J.2
  • 12
    • 32644477673 scopus 로고    scopus 로고
    • Hydrography of the eastern tropical Pacific: a review
    • doi: 10.1016/j.pocean.2006.03.008
    • Fiedler, P. C., and Talley, L. D. (2006). Hydrography of the eastern tropical Pacific: a review. Prog. Oceanogr. 69, 143-180. doi: 10.1016/j.pocean.2006.03.008
    • (2006) Prog. Oceanogr. , vol.69 , pp. 143-180
    • Fiedler, P.C.1    Talley, L.D.2
  • 13
    • 68549107702 scopus 로고    scopus 로고
    • The biogeography of ammonia of ammonia-oxidizing bacterial communities in soil
    • doi: 10.1007/s00248-009-9517-9
    • Fierer, N., Carney, K. M., Horner-Devine, M. C., and Megonigal, J. P. (2009). The biogeography of ammonia of ammonia-oxidizing bacterial communities in soil. Mirob. Ecol. 58, 435-445. doi: 10.1007/s00248-009-9517-9
    • (2009) Mirob. Ecol. , vol.58 , pp. 435-445
    • Fierer, N.1    Carney, K.M.2    Horner-Devine, M.C.3    Megonigal, J.P.4
  • 14
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
    • doi: 10.1073/pnas.0506625102
    • Francis, C. A., Roberts, K. J., Beman, J. M., Santoro, A. E., and Oakley, B. B. (2005). Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc. Natl. Acad. Sci. U.S.A. 102, 14683-14688. doi: 10.1073/pnas.0506625102
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 15
    • 0021613580 scopus 로고
    • Bacterial chemolithotrophy in the ocean is associated with sinking particles
    • doi: 10.1038/309054a0
    • Karl, D. M., Knauer, G. A., Martin, J. H., and Ward, B. B. (1984). Bacterial chemolithotrophy in the ocean is associated with sinking particles. Nature 309, 54-56. doi: 10.1038/309054a0
    • (1984) Nature , vol.309 , pp. 54-56
    • Karl, D.M.1    Knauer, G.A.2    Martin, J.H.3    Ward, B.B.4
  • 16
    • 0001811221 scopus 로고    scopus 로고
    • "Tracing nitrogen sources and cycling in catchments
    • (Amsterdam: Elsevier Science), doi: 10.1016/B978-0-444-81546-0.50023-9
    • Kendall, C. (1998). "Tracing nitrogen sources and cycling in catchments," in Isotope Tracers in Catchment Hydrology, eds C. Kendall and J. J. McDonnell (Amsterdam: Elsevier Science), 519-576. doi: 10.1016/B978-0-444-81546-0.50023-9
    • (1998) Isotope Tracers in Catchment Hydrology, eds C. Kendall and J. J. McDonnell , pp. 519-576
    • Kendall, C.1
  • 17
    • 25644435673 scopus 로고    scopus 로고
    • Isolation of an autotrophic ammonia-oxidizing marine archaeon
    • doi: 10.1038/nature03911
    • Könneke, M., Bernhard, A. E., de la Torre, J. R., Walker, C. B., Waterbury, J. B., and Stahl, D. A. (2005). Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437, 543-546. doi: 10.1038/nature03911
    • (2005) Nature , vol.437 , pp. 543-546
    • Könneke, M.1    Bernhard, A.E.2    de la Torre, J.R.3    Walker, C.B.4    Waterbury, J.B.5    Stahl, D.A.6
  • 19
    • 0034782218 scopus 로고    scopus 로고
    • Ecologically meaningful transformations for ordination of species data
    • doi: 10.1007/s004420100716
    • Legendre, P., and Gallagher, E. D. (2001). Ecologically meaningful transformations for ordination of species data. Oecologia 129, 271-280. doi: 10.1007/s004420100716
    • (2001) Oecologia , vol.129 , pp. 271-280
    • Legendre, P.1    Gallagher, E.D.2
  • 20
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine nicheseparation of nitrifying Archaea and Bacteria
    • doi: 10.1038/nature08465
    • Martens-Habbena, W., Berube, P. M., Urakawa, H., de la Torre, J. R., and Stahl, D. (2009). Ammonia oxidation kinetics determine nicheseparation of nitrifying Archaea and Bacteria. Nature 461, 976-981. doi: 10.1038/nature08465
    • (2009) Nature , vol.461 , pp. 976-981
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    de la Torre, J.R.4    Stahl, D.5
  • 22
    • 84855511258 scopus 로고    scopus 로고
    • Differential photoinhibition of bacterial and archaeal ammonia oxidation
    • doi: 10.1111/j.1574-6968.2011.02457.x
    • Merbt, S. N., Stahl, D. A., Casamayor, E. O., Marti, E., Nicol, G. W., and Prosser, J. I. (2012). Differential photoinhibition of bacterial and archaeal ammonia oxidation. FEMS Microbiol. Lett. 327, 41-46. doi: 10.1111/j.1574-6968.2011.02457.x
    • (2012) FEMS Microbiol. Lett. , vol.327 , pp. 41-46
    • Merbt, S.N.1    Stahl, D.A.2    Casamayor, E.O.3    Marti, E.4    Nicol, G.W.5    Prosser, J.I.6
  • 23
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the NorthPacific Subtropical Gyre
    • doi: 10.1111/j.1462-2920.2007.01239.x
    • Mincer, T. J., Church, M. J., Taylor, L. T., Preston, C., Karl, D. M., and DeLong, E. F. (2007). Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the NorthPacific Subtropical Gyre. Environ. Microbiol. 9, 1162-1175. doi: 10.1111/j.1462-2920.2007.01239.x
    • (2007) Environ. Microbiol. , vol.9 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    DeLong, E.F.6
  • 24
    • 77956256740 scopus 로고    scopus 로고
    • High diversity of ammonia-oxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific
    • doi: 10.1111/j.1462-2920.2010.02218.x
    • Molina, V., Belmar, L., and Ulloa, O. (2010). High diversity of ammonia-oxidizing archaea in permanent and seasonal oxygen-deficient waters of the eastern South Pacific. Environ. Microbiol. 12, 2450-2465. doi: 10.1111/j.1462-2920.2010.02218.x
    • (2010) Environ. Microbiol. , vol.12 , pp. 2450-2465
    • Molina, V.1    Belmar, L.2    Ulloa, O.3
  • 25
    • 84867688970 scopus 로고    scopus 로고
    • Ecophisiology of an ammonia-oxidizing archaeon adapted to low-salinity habitats
    • doi: 10.1007/s00248-012-0075-1
    • Mosier, A. C., Lund, M. B., and Francis, C. A. (2012). Ecophisiology of an ammonia-oxidizing archaeon adapted to low-salinity habitats. Microb. Ecol. 64, 955-963. doi: 10.1007/s00248-012-0075-1
    • (2012) Microb. Ecol. , vol.64 , pp. 955-963
    • Mosier, A.C.1    Lund, M.B.2    Francis, C.A.3
  • 26
    • 84855266344 scopus 로고    scopus 로고
    • Ammonia oxidation rates and nitrification in the Arabian Sea
    • doi: 10.1029/2010GB003940
    • Newell, S. E., Babbin, A. R., Jayakumar, A., and Ward, B. B. (2011). Ammonia oxidation rates and nitrification in the Arabian Sea. Global Biogeochem. Cycle 25:GB4016. doi: 10.1029/2010GB003940
    • (2011) Global Biogeochem. Cycle , vol.25
    • Newell, S.E.1    Babbin, A.R.2    Jayakumar, A.3    Ward, B.B.4
  • 27
    • 78649703098 scopus 로고    scopus 로고
    • Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria
    • doi: 10.1128/AEM.01478-10
    • Park, B., Park, S., Yoon, D., Schouten, S., Sinninghe Damste, J. S., and Rhee, S. (2010). Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria. Appl. Environ. Microbiol. 76, 7575-7587. doi: 10.1128/AEM.01478-10
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 7575-7587
    • Park, B.1    Park, S.2    Yoon, D.3    Schouten, S.4    Sinninghe Damste, J.S.5    Rhee, S.6
  • 28
    • 84856577796 scopus 로고    scopus 로고
    • amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
    • doi: 10.1111/j.1462-2920.2011.02666.x
    • Pester, M., Rattei, T., Flechl, S., Grongroft, A., Richter, A., Overmann, J., et al. (2012). amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions. Environ. Microbiol. 14, 525-539. doi: 10.1111/j.1462-2920.2011.02666.x
    • (2012) Environ. Microbiol. , vol.14 , pp. 525-539
    • Pester, M.1    Rattei, T.2    Flechl, S.3    Grongroft, A.4    Richter, A.5    Overmann, J.6
  • 29
    • 81855185502 scopus 로고    scopus 로고
    • Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone
    • doi: 10.1038/ismej.2011.60
    • Pitcher, A., Villanueva, L., Hopmans, E. C., Schouten, S., Reichart, G., and Damste, J. S. S. (2011). Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone. ISME J. 5, 1896-1904. doi: 10.1038/ismej.2011.60
    • (2011) ISME J. , vol.5 , pp. 1896-1904
    • Pitcher, A.1    Villanueva, L.2    Hopmans, E.C.3    Schouten, S.4    Reichart, G.5    Damste, J.S.S.6
  • 30
    • 33846914243 scopus 로고    scopus 로고
    • Global patterns of diversity and community structure in marine bacterioplankton
    • doi: 10.1111/j.1365-294X.2006.03189.x
    • Pommier, T., Canback, B., Riemann, L., Bostrom, K. H., Simu, K., Lundberg, P., et al. (2007). Global patterns of diversity and community structure in marine bacterioplankton. Mol. Ecol. 16, 867-880. doi: 10.1111/j.1365-294X.2006.03189.x
    • (2007) Mol. Ecol. , vol.16 , pp. 867-880
    • Pommier, T.1    Canback, B.2    Riemann, L.3    Bostrom, K.H.4    Simu, K.5    Lundberg, P.6
  • 31
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team, Vienna: R Foundation for Statistical Computing. ISBN 3-900051-07-0, URL
    • R Core Team. (2012). R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing. ISBN 3-900051-07-0, URL http://www.R-project.org/
    • (2012) R: A Language and Environment for Statistical Computing
  • 32
    • 0024813669 scopus 로고
    • Evolution of the climatological near-surface thermal structure of the tropical Indian Ocean 1. Description of mean monthly mixed layer depth, and sea surface temperature, surface current, and surface meteorological fields
    • doi: 10.1029/JC094iC08p10801
    • Rao, R. R., Molinari, R. L., and Festa, J. F. (1989). Evolution of the climatological near-surface thermal structure of the tropical Indian Ocean 1. Description of mean monthly mixed layer depth, and sea surface temperature, surface current, and surface meteorological fields. J. Geophys. Res. 94, 10801-10815. doi: 10.1029/JC094iC08p10801
    • (1989) J. Geophys. Res. , vol.94 , pp. 10801-10815
    • Rao, R.R.1    Molinari, R.L.2    Festa, J.F.3
  • 33
    • 40949097432 scopus 로고    scopus 로고
    • Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary
    • doi: 10.1111/j.1462-2920.2007.01547.x
    • Santoro, A. E., Francis, C. A., de Sieyes, N. R., and Boehm, A. B. (2008). Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environ. Microbiol. 10, 1068-1079. doi: 10.1111/j.1462-2920.2007.01547.x
    • (2008) Environ. Microbiol. , vol.10 , pp. 1068-1079
    • Santoro, A.E.1    Francis, C.A.2    de Sieyes, N.R.3    Boehm, A.B.4
  • 34
    • 78049432317 scopus 로고    scopus 로고
    • Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current
    • doi: 10.1111/j.1462-2920.2010.02205.x
    • Santoro, A. E., Casciotti, K. L., and Francis, C. A. (2010). Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current. Environ. Microbiol. 12, 1989-2006. doi: 10.1111/j.1462-2920.2010.02205.x
    • (2010) Environ. Microbiol. , vol.12 , pp. 1989-2006
    • Santoro, A.E.1    Casciotti, K.L.2    Francis, C.A.3
  • 35
    • 80054738892 scopus 로고    scopus 로고
    • Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation
    • doi: 10.1038/ismej.2011.58
    • Santoro, A. E., and Casciotti, K. L. (2011). Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation. ISME J. 5, 1796-1808. doi: 10.1038/ismej.2011.58
    • (2011) ISME J. , vol.5 , pp. 1796-1808
    • Santoro, A.E.1    Casciotti, K.L.2
  • 37
    • 41849142283 scopus 로고    scopus 로고
    • Bacterial diversity in the oxygen minimum zone of the Eastern Tropical South Pacific
    • doi: 10.1111/j.1462-2920.2007.01539.x
    • Stevens, H., and Ulloa, O. (2008). Bacterial diversity in the oxygen minimum zone of the Eastern Tropical South Pacific. Environ. Microbiol. 10, 1244-1259. doi: 10.1111/j.1462-2920.2007.01539.x
    • (2008) Environ. Microbiol. , vol.10 , pp. 1244-1259
    • Stevens, H.1    Ulloa, O.2
  • 38
    • 44449085974 scopus 로고    scopus 로고
    • Microbial ecology of ocean biogeochemistry: a community perspective
    • doi: 10.1126/science.1153527
    • Strom, S. L. (2008). Microbial ecology of ocean biogeochemistry: a community perspective. Science 320, 1043-1045. doi: 10.1126/science.1153527
    • (2008) Science , vol.320 , pp. 1043-1045
    • Strom, S.L.1
  • 39
    • 0037316061 scopus 로고    scopus 로고
    • Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment
    • doi: 10.1128/AEM.69.2.1159-1171.2003
    • Taroncher-Oldenburg, G., Griner, E., Francis, C. A., and Ward, B. B. (2003). Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Appl. Environ. Microbiol. 69, 1159-1171. doi: 10.1128/AEM.69.2.1159-1171.2003
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1159-1171
    • Taroncher-Oldenburg, G.1    Griner, E.2    Francis, C.A.3    Ward, B.B.4
  • 40
    • 84859794545 scopus 로고    scopus 로고
    • Widespread functional anoxia in the oxygen minimum zone of the Eastern South Pacific
    • doi: 10.1016/j.dsr.2012.03.001
    • Thamdrup, B., Dalsgaaard, T., and Revsbech, N. P. (2012). Widespread functional anoxia in the oxygen minimum zone of the Eastern South Pacific. Deep Sea Res. Pt. I 65, 36-45. doi: 10.1016/j.dsr.2012.03.001
    • (2012) Deep Sea Res. Pt. I , vol.65 , pp. 36-45
    • Thamdrup, B.1    Dalsgaaard, T.2    Revsbech, N.P.3
  • 42
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-relatedproteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • doi: 10.1111/j.1462-2920.2005.00906.x
    • Treusch, A. H., Leininger, S., Kletzin, A., Schuster, S. C., Klenk, H., and Schleper, C. (2005). Novel genes for nitrite reductase and Amo-relatedproteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol. 7, 1985-1995. doi: 10.1111/j.1462-2920.2005.00906.x
    • (2005) Environ. Microbiol. , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, S.C.4    Klenk, H.5    Schleper, C.6
  • 43
    • 11144354360 scopus 로고    scopus 로고
    • Environmental genome shotgun sequencing of the Sargasso Sea
    • doi: 10.1126/science.1093857
    • Venter, J. C., Remington, K., Heidelberg, J. F., Halpern, A. L., Rusch, D., Eisen, J. A., et al. (2004). Environmental genome shotgun sequencing of the Sargasso Sea. Science 304, 66-74. doi: 10.1126/science.1093857
    • (2004) Science , vol.304 , pp. 66-74
    • Venter, J.C.1    Remington, K.2    Heidelberg, J.F.3    Halpern, A.L.4    Rusch, D.5    Eisen, J.A.6
  • 44
    • 0023495837 scopus 로고
    • Nitrogen transformations in the Southern California Bight
    • doi: 10.1016/0198-0149(87)90037-9
    • Ward, B. B. (1987). Nitrogen transformations in the Southern California Bight. Deep-Sea Res. 34, 785-805. doi: 10.1016/0198-0149(87)90037-9
    • (1987) Deep-Sea Res. , vol.34 , pp. 785-805
    • Ward, B.B.1
  • 45
    • 52949112412 scopus 로고    scopus 로고
    • Phytoplankton community composition and gene expression of functional genes involved in carbon and nitrogen assimilation
    • doi: 10.1111/j.1529-8817.2008.00594.x
    • Ward, B. B. (2008). Phytoplankton community composition and gene expression of functional genes involved in carbon and nitrogen assimilation. J. Phycol. 44, 1490-1503. doi: 10.1111/j.1529-8817.2008.00594.x
    • (2008) J. Phycol. , vol.44 , pp. 1490-1503
    • Ward, B.B.1
  • 46
    • 69949108471 scopus 로고    scopus 로고
    • Denitrification as the dominant nitrogen loss process in the Arabian Sea
    • doi: 10.1038/nature08276
    • Ward, B. B., Devol, A. H., Rich, J. J., Chang, B. X., Bulow, S. E., Naik, H., et al. (2009). Denitrification as the dominant nitrogen loss process in the Arabian Sea. Nature 461, 78-82. doi: 10.1038/nature08276
    • (2009) Nature , vol.461 , pp. 78-82
    • Ward, B.B.1    Devol, A.H.2    Rich, J.J.3    Chang, B.X.4    Bulow, S.E.5    Naik, H.6
  • 47
    • 79955498225 scopus 로고    scopus 로고
    • "The utility of functional gene arrays for assessing community composition, relative abundance, and distribution of ammonia-oxidizing bacteria and archaea
    • eds M. G. Klotz and L. Y. Stein, (Burlington: Academic Press)
    • Ward, B. B., and Bouskill, N. J. (2011). "The utility of functional gene arrays for assessing community composition, relative abundance, and distribution of ammonia-oxidizing bacteria and archaea," in Methods in Enzymology, Vol. 496, eds M. G. Klotz and L. Y. Stein, (Burlington: Academic Press), 373-396.
    • (2011) Methods in Enzymology , vol.496 , pp. 373-396
    • Ward, B.B.1    Bouskill, N.J.2
  • 48
    • 34547201959 scopus 로고    scopus 로고
    • Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system
    • doi: 10.1128/AEM.02774-06
    • Woebken, D., Fuchs, B. M., Kuypers, M. M. M., and Amann, R. (2007). Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl. Environ. Microbiol. 73, 4648-4657. doi: 10.1128/AEM.02774-06
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 4648-4657
    • Woebken, D.1    Fuchs, B.M.2    Kuypers, M.M.M.3    Amann, R.4
  • 50
    • 34250369150 scopus 로고    scopus 로고
    • Archaeal tetraether membrane lipid fluxes in the northeastern Pacific and the Arabian Sea: Implications for TEX86 paleothermometry
    • doi: 10.1029/2006PA001279
    • Wuchter, C., Schouten, S., Wakeham, S. G., and Sinninghe Damste, J. S. (2006b). Archaeal tetraether membrane lipid fluxes in the northeastern Pacific and the Arabian Sea: Implications for TEX86 paleothermometry. Paleoceanography 21:PA4208. doi: 10.1029/2006PA001279
    • (2006) Paleoceanography , vol.21
    • Wuchter, C.1    Schouten, S.2    Wakeham, S.G.3    Sinninghe Damste, J.S.4
  • 51
    • 84870493927 scopus 로고    scopus 로고
    • Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system
    • doi: 10.1111/j.1462-2920.2012.02894.x
    • Yan, J., Haaijer, S. C. M., Camp, H. J. M. O., van Niftrik, L., Stahl, D. A., Könneke, M., et al. (2012). Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system. Environ. Microbiol. 14, 3146-3158. doi: 10.1111/j.1462-2920.2012.02894.x
    • (2012) Environ. Microbiol. , vol.14 , pp. 3146-3158
    • Yan, J.1    Haaijer, S.C.M.2    Camp, H.J.M.O.3    van Niftrik, L.4    Stahl, D.A.5    Könneke, M.6
  • 52
    • 34250896177 scopus 로고    scopus 로고
    • The significance of nitrification for oceanic new production
    • doi: 10.1038/nature05885
    • Yool, A., Martin, A. P., Fernandez, C., and Clark, D. R. (2007). The significance of nitrification for oceanic new production. Nature 447, 999-1002. doi: 10.1038/nature05885
    • (2007) Nature , vol.447 , pp. 999-1002
    • Yool, A.1    Martin, A.P.2    Fernandez, C.3    Clark, D.R.4
  • 53
    • 54949087158 scopus 로고    scopus 로고
    • Global occurrence of archaeal amoA genes in terrestrial hot springs
    • doi: 10.1128/AEM.00843-08
    • Zhang, C. L., Ye, Q., Huang, Z., Li, W., Chen, J., Song, Z., et al. (2008). Global occurrence of archaeal amoA genes in terrestrial hot springs. Appl. Environ. Microbiol. 74, 6417-6426. doi: 10.1128/AEM.00843-08
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 6417-6426
    • Zhang, C.L.1    Ye, Q.2    Huang, Z.3    Li, W.4    Chen, J.5    Song, Z.6
  • 54
    • 0000856509 scopus 로고
    • Use of an improved statistical method for group comparisons to study effects of prairie fire
    • doi: 10.2307/1940409
    • Zimmerman, G. M., Goetz, H., and Mielke, P. W. (1985). Use of an improved statistical method for group comparisons to study effects of prairie fire. Ecology 66, 606-611 doi: 10.2307/1940409
    • (1985) Ecology , vol.66 , pp. 606-611
    • Zimmerman, G.M.1    Goetz, H.2    Mielke, P.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.