-
1
-
-
0242384034
-
Review and reanalysis of domain-specific 16S primers
-
Baker, G. C., Smith, J. J. & Cowan, D. A. (2003). Review and reanalysis of domain-specific 16S primers. J Microbiol Methods 55, 541-555.
-
(2003)
J Microbiol Methods
, vol.55
, pp. 541-555
-
-
Baker, G.C.1
Smith, J.J.2
Cowan, D.A.3
-
2
-
-
0017682064
-
Distribution of menaquinones in actinomycetes and corynebacteria
-
Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
-
(1977)
J Gen Microbiol
, vol.100
, pp. 221-230
-
-
Collins, M.D.1
Pirouz, T.2
Goodfellow, M.3
Minnikin, D.E.4
-
3
-
-
48349094114
-
Phylogenetic diversity of thermophilic carbohydrate degrading bacilli from Bulgarian hot springs
-
Derekova, A., Mandeva, R. & Kambourova, M. (2008). Phylogenetic diversity of thermophilic carbohydrate degrading bacilli from Bulgarian hot springs. World J Microbiol Biotechnol 24, 1697-1702.
-
(2008)
World J Microbiol Biotechnol
, vol.24
, pp. 1697-1702
-
-
Derekova, A.1
Mandeva, R.2
Kambourova, M.3
-
4
-
-
0021798488
-
The DNA base composition of the type strains of the genus Bacillus
-
Fahmy, F., Flossdorf, J. & Claus, D. (1985). The DNA base composition of the type strains of the genus Bacillus. Syst Appl Microbiol 6, 60-65.
-
(1985)
Syst Appl Microbiol
, vol.6
, pp. 60-65
-
-
Fahmy, F.1
Flossdorf, J.2
Claus, D.3
-
5
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
6
-
-
27644580671
-
Microbial redox reactions mediated by humus and structurally related quinones
-
In, (NATO Science Series, vol. 52), Edited by I. V. Perminova, K. Hatfield & N. Hertkorn. Dordrecht: Springer
-
Field, J. A. & Cervantes, F. J. (2005). Microbial redox reactions mediated by humus and structurally related quinones. In Use of Humic Substances to Remediate Polluted Environments: From Theory to Practice (NATO Science Series, vol. 52), pp. 343-352. Edited by I. V. Perminova, K. Hatfield & N. Hertkorn. Dordrecht: Springer.
-
(2005)
Use of Humic Substances to Remediate Polluted Environments: From Theory to Practice
, pp. 343-352
-
-
Field, J.A.1
Cervantes, F.J.2
-
7
-
-
13344250396
-
Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil
-
Heyrman, J., Rodríguez-Díaz, M., Devos, J., Felske, A., Logan, N. A. & De Vos, P. (2005). Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil. Int J Syst Evol Microbiol 55, 111-117.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 111-117
-
-
Heyrman, J.1
Rodríguez-Díaz, M.2
Devos, J.3
Felske, A.4
Logan, N.A.5
De Vos, P.6
-
8
-
-
0028272429
-
Limits and possibilities of total fatty acid analysis for classification and identification of Bacillis species
-
Kämpfer, P. (1994). Limits and possibilities of total fatty acid analysis for classification and identification of Bacillis species. Syst Appl Microbiol 17, 86-98.
-
(1994)
Syst Appl Microbiol
, vol.17
, pp. 86-98
-
-
Kämpfer, P.1
-
9
-
-
84863230041
-
Introducing EzTaxon-e: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
-
other authors
-
Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 716-721
-
-
Kim, O.S.1
Cho, Y.J.2
Lee, K.3
Yoon, S.H.4
Kim, M.5
Na, H.6
Park, S.C.7
Jeon, Y.S.8
Lee, J.H.9
-
10
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
11
-
-
0000978501
-
Determination of carbohydrate metabolism of marine bacteria
-
Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
-
(1963)
J Bacteriol
, vol.85
, pp. 1183-1184
-
-
Leifson, E.1
-
12
-
-
0029790133
-
Humic substances as electron acceptors for microbial respiration
-
Lovley, D. R., Coates, J. D., Blunt-Harris, E. L., Phillips, E. J. P. & Woodward, J. C. (1996). Humic substances as electron acceptors for microbial respiration. Nature 382, 445-448.
-
(1996)
Nature
, vol.382
, pp. 445-448
-
-
Lovley, D.R.1
Coates, J.D.2
Blunt-Harris, E.L.3
Phillips, E.J.P.4
Woodward, J.C.5
-
13
-
-
84859597334
-
Alkaline extracellular reduction: Isolation and characterization of an alkaliphilic and halotolerant bacterium, Bacillus pseudofirmus MC02
-
Ma, C., Zhuang, L., Zhou, S. G., Yang, G. Q., Yuan, Y. & Xu, R. X. (2012). Alkaline extracellular reduction: isolation and characterization of an alkaliphilic and halotolerant bacterium, Bacillus pseudofirmus MC02. J Appl Microbiol 112, 883-891.
-
(2012)
J Appl Microbiol
, vol.112
, pp. 883-891
-
-
Ma, C.1
Zhuang, L.2
Zhou, S.G.3
Yang, G.Q.4
Yuan, Y.5
Xu, R.X.6
-
14
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography
-
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
15
-
-
0021182575
-
An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids
-
Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
-
(1984)
J Microbiol Methods
, vol.2
, pp. 233-241
-
-
Minnikin, D.E.1
O'Donnell, A.G.2
Goodfellow, M.3
Alderson, G.4
Athalye, M.5
Schaal, A.6
Parlett, J.H.7
-
16
-
-
0034802284
-
Bacillus sonorensis sp. nov., a close relative of Bacillus licheniformis, isolated from soil in the Sonoran Desert, Arizona
-
Palmisano, M. M., Nakamura, L. K., Duncan, K. E., Istock, C. A. & Cohan, F. M. (2001). Bacillus sonorensis sp. nov., a close relative of Bacillus licheniformis, isolated from soil in the Sonoran Desert, Arizona. Int J Syst Evol Microbiol 51, 1671-1679.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 1671-1679
-
-
Palmisano, M.M.1
Nakamura, L.K.2
Duncan, K.E.3
Istock, C.A.4
Cohan, F.M.5
-
17
-
-
0344780789
-
Bacillus silvestris sp. nov., a new member of the genus Bacillus that contains lysine in its cell wall
-
Rheims, H., Frühling, A., Schumann, P., Rohde, M. & Stackebrandt, E. (1999). Bacillus silvestris sp. nov., a new member of the genus Bacillus that contains lysine in its cell wall. Int J Syst Bacteriol 49, 795-802.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 795-802
-
-
Rheims, H.1
Frühling, A.2
Schumann, P.3
Rohde, M.4
Stackebrandt, E.5
-
18
-
-
0027185401
-
Theoretical foundation of the minimum-evolution method of phylogenetic inference
-
Rzhetsky, A. & Nei, M. (1993). Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol Biol Evol 10, 1073-1095.
-
(1993)
Mol Biol Evol
, vol.10
, pp. 1073-1095
-
-
Rzhetsky, A.1
Nei, M.2
-
19
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
21
-
-
0000612080
-
Phenotypic characterization
-
In, Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
-
Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
-
(1994)
Methods for General and Molecular Bacteriology
, pp. 607-654
-
-
Smibert, R.M.1
Krieg, N.R.2
-
22
-
-
27644542792
-
Enrichment and isolation of ferric-iron-and humic-acid-reducing bacteria
-
Straub, K. L., Kappler, A. & Schink, B. (2005). Enrichment and isolation of ferric-iron-and humic-acid-reducing bacteria. Methods Enzymol 397, 58-77.
-
(2005)
Methods Enzymol
, vol.397
, pp. 58-77
-
-
Straub, K.L.1
Kappler, A.2
Schink, B.3
-
23
-
-
0020638681
-
Analysis of bacterial menaquinone mixtures by high performance liquid chromatography
-
Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
-
(1983)
J Appl Bacteriol
, vol.54
, pp. 31-36
-
-
Tamaoka, J.1
Katayama-Fujimura, Y.2
Kuraishi, H.3
-
24
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
25
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
26
-
-
33751208027
-
Bacillus foraminis sp. nov., isolated from a nonsaline alkaline groundwater
-
Tiago, I., Pires, C., Mendes, V., Morais, P. V., da Costa, M. S. & Veríssimo, A. (2006). Bacillus foraminis sp. nov., isolated from a nonsaline alkaline groundwater. Int J Syst Evol Microbiol 56, 2571-2574.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 2571-2574
-
-
Tiago, I.1
Pires, C.2
Mendes, V.3
Morais, P.V.4
da Costa, M.S.5
Veríssimo, A.6
-
27
-
-
84855715940
-
Bacillus purgationiresistans sp. nov., isolated from a drinking-water treatment plant
-
Vaz-Moreira, I., Figueira, V., Lopes, A. R., Lobo-da-Cunha, A., Spröer, C., Schumann, P., Nunes, O. C. & Manaia, C. M. (2012). Bacillus purgationiresistans sp. nov., isolated from a drinking-water treatment plant. Int J Syst Evol Microbiol 62, 71-77.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 71-77
-
-
Vaz-Moreira, I.1
Figueira, V.2
Lopes, A.R.3
Lobo-da-Cunha, A.4
Spröer, C.5
Schumann, P.6
Nunes, O.C.7
Manaia, C.M.8
-
28
-
-
34548173505
-
Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group
-
Wang, L. T., Lee, F. L., Tai, C. J. & Kasai, H. (2007). Comparison of gyrB gene sequences, 16S rRNA gene sequences and DNA-DNA hybridization in the Bacillus subtilis group. Int J Syst Evol Microbiol 57, 1846-1850.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 1846-1850
-
-
Wang, L.T.1
Lee, F.L.2
Tai, C.J.3
Kasai, H.4
-
29
-
-
79955377383
-
Corynebacterium humireducens sp. nov., an alkaliphilic, humic acidreducing bacterium isolated from a microbial fuel cell
-
Wu, C. Y., Zhuang, L., Zhou, S. G., Li, F. B. & He, J. (2011). Corynebacterium humireducens sp. nov., an alkaliphilic, humic acidreducing bacterium isolated from a microbial fuel cell. Int J Syst Evol Microbiol 61, 882-887.
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 882-887
-
-
Wu, C.Y.1
Zhuang, L.2
Zhou, S.G.3
Li, F.B.4
He, J.5
-
30
-
-
0028948030
-
PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
-
Yamamoto, S. & Harayama, S. (1995). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl Environ Microbiol 61, 1104-1109.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1104-1109
-
-
Yamamoto, S.1
Harayama, S.2
-
31
-
-
0033764790
-
Phylogeny of the genus Pseudomonas: Intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes
-
Yamamoto, S., Kasai, H., Arnold, D. L., Jackson, R. W., Vivian, A. & Harayama, S. (2000). Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146, 2385-2394.
-
(2000)
Microbiology
, vol.146
, pp. 2385-2394
-
-
Yamamoto, S.1
Kasai, H.2
Arnold, D.L.3
Jackson, R.W.4
Vivian, A.5
Harayama, S.6
-
32
-
-
49749087966
-
Removal of arsenic from contaminated soils by microbial reduction of arsenate and quinone
-
Yamamura, S., Watanabe, M., Kanzaki, M., Soda, S. & Ike, M. (2008). Removal of arsenic from contaminated soils by microbial reduction of arsenate and quinone. Environ Sci Technol 42, 6154-6159.
-
(2008)
Environ Sci Technol
, vol.42
, pp. 6154-6159
-
-
Yamamura, S.1
Watanabe, M.2
Kanzaki, M.3
Soda, S.4
Ike, M.5
-
34
-
-
78650224483
-
Bacillus oceanisediminis sp. nov., isolated from marine sediment
-
Zhang, J., Wang, J., Fang, C., Song, F., Xin, Y., Qu, L. & Ding, K. (2010). Bacillus oceanisediminis sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 60, 2924-2929.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 2924-2929
-
-
Zhang, J.1
Wang, J.2
Fang, C.3
Song, F.4
Xin, Y.5
Qu, L.6
Ding, K.7
|