메뉴 건너뛰기




Volumn 117, Issue 39, 2013, Pages 11541-11547

PH-induced conformational change and dimerization of DNA chains investigated by analytical ultracentrifugation

Author keywords

[No Author keywords available]

Indexed keywords

CENTRIFUGATION; CHAINS; DNA;

EID: 84885146608     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp405561f     Document Type: Article
Times cited : (12)

References (49)
  • 1
    • 0027278767 scopus 로고
    • A Tetrameric DNA Structure with Protonated Cytosine·Cytosine Base Pairs
    • Gehring, K.; Leroy, J. L.; Guéron, M. A Tetrameric DNA Structure with Protonated Cytosine·Cytosine Base Pairs Nature 1993, 363, 561-565
    • (1993) Nature , vol.363 , pp. 561-565
    • Gehring, K.1    Leroy, J.L.2    Guéron, M.3
  • 3
    • 0028988486 scopus 로고
    • St-1, a 39-Kilodalton Protein in Trypanosoma Brucei, Exhibits a Dual Affinity for the Duplex Form of the 29-Base-Pair Subtelomeric Repeat and Its C-Rich Strand
    • Eid, J. E.; Sollner-Webb, B. St-1, a 39-Kilodalton Protein in Trypanosoma Brucei, Exhibits a Dual Affinity for the Duplex Form of the 29-Base-Pair Subtelomeric Repeat and Its C-Rich Strand Mol. Cell. Biol. 1995, 15, 389-397
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 389-397
    • Eid, J.E.1    Sollner-Webb, B.2
  • 8
    • 0035997020 scopus 로고    scopus 로고
    • Participation of Yeast Inosine 5′-Monophosphate Dehydrogenase in an in Vitro Complex with a Fragment of the C-Rich Telomeric Strand
    • Cornuel, J. F.; Moraillon, A.; Guéron, M. Participation of Yeast Inosine 5′-Monophosphate Dehydrogenase in an in Vitro Complex with a Fragment of the C-Rich Telomeric Strand Biochimie 2002, 84, 279-289
    • (2002) Biochimie , vol.84 , pp. 279-289
    • Cornuel, J.F.1    Moraillon, A.2    Guéron, M.3
  • 10
    • 14744285972 scopus 로고    scopus 로고
    • From Genes to Machines: DNA Nanomechanical Devices
    • Seeman, N. C. From Genes to Machines: DNA Nanomechanical Devices Trends Biochem. Sci. 2005, 30, 119-125
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 119-125
    • Seeman, N.C.1
  • 12
    • 27544503005 scopus 로고    scopus 로고
    • Switching the Conformation of a DNA Molecule with a Chemical Oscillator
    • Liedl, T.; Simmel, F. C. Switching the Conformation of a DNA Molecule with a Chemical Oscillator Nano Lett. 2005, 5, 1894-1898
    • (2005) Nano Lett. , vol.5 , pp. 1894-1898
    • Liedl, T.1    Simmel, F.C.2
  • 17
    • 36649020260 scopus 로고    scopus 로고
    • Use of the Interparticle i-Motif for the Controlled Assembly of Gold Nanoparticles
    • Wang, W. X.; Liu, H. J.; Liu, D. S.; Xu, Y. R.; Yang, Y.; Zhou, D. J. Use of the Interparticle i-Motif for the Controlled Assembly of Gold Nanoparticles Langmuir 2007, 23, 11956-11959
    • (2007) Langmuir , vol.23 , pp. 11956-11959
    • Wang, W.X.1    Liu, H.J.2    Liu, D.S.3    Xu, Y.R.4    Yang, Y.5    Zhou, D.J.6
  • 18
  • 19
    • 78349303043 scopus 로고    scopus 로고
    • Reversible pH-Regulated Control of Photosensitized Singlet Oxygen Production Using a DNA i-Motif
    • Torring, T.; Toftegaard, R.; Arnbjerg, J.; Ogilby, P. R.; Gothelf, K. V. Reversible pH-Regulated Control of Photosensitized Singlet Oxygen Production Using a DNA i-Motif Angew. Chem., Int. Ed. 2010, 49, 7923-7925
    • (2010) Angew. Chem., Int. Ed. , vol.49 , pp. 7923-7925
    • Torring, T.1    Toftegaard, R.2    Arnbjerg, J.3    Ogilby, P.R.4    Gothelf, K.V.5
  • 20
    • 84865797783 scopus 로고    scopus 로고
    • A Photon-Fueled Gate-Like Delivery System Using i-Motif DNA Functionalized Mesoporous Silica Nanoparticles
    • He, D. G.; He, X. X.; Wang, K. M.; Cao, J.; Zhao, Y. X. A Photon-Fueled Gate-Like Delivery System Using i-Motif DNA Functionalized Mesoporous Silica Nanoparticles Adv. Funct. Mater. 2012, 22, 4704-4710
    • (2012) Adv. Funct. Mater. , vol.22 , pp. 4704-4710
    • He, D.G.1    He, X.X.2    Wang, K.M.3    Cao, J.4    Zhao, Y.X.5
  • 21
    • 84872574947 scopus 로고    scopus 로고
    • Reversible Plasmonic Probe Sensitive for pH in Micro/Nanospaces Based on i-Motif-Modulated Morpholino-Gold Nanoparticle Assembly
    • Zhao, Y.; Cao, L.; Ouyang, J.; Wang, M.; Wang, K.; Xia, X. H. Reversible Plasmonic Probe Sensitive for pH in Micro/Nanospaces Based on i-Motif-Modulated Morpholino-Gold Nanoparticle Assembly Anal. Chem. 2013, 85, 1053-1057
    • (2013) Anal. Chem. , vol.85 , pp. 1053-1057
    • Zhao, Y.1    Cao, L.2    Ouyang, J.3    Wang, M.4    Wang, K.5    Xia, X.H.6
  • 22
    • 84878628254 scopus 로고    scopus 로고
    • Stimuli-Responsive Plasmonic Core-Satellite Assemblies: I-Motif DNA Linker Enabled Intracellular pH Sensing
    • Wang, C. X.; Du, Y.; Wu, Q.; Xuan, S. G.; Zhou, J. J.; Song, J. B.; Shao, F. W.; Duan, H. W. Stimuli-Responsive Plasmonic Core-Satellite Assemblies: i-Motif DNA Linker Enabled Intracellular pH Sensing Chem. Commun. 2013, 49, 5739-5741
    • (2013) Chem. Commun. , vol.49 , pp. 5739-5741
    • Wang, C.X.1    Du, Y.2    Wu, Q.3    Xuan, S.G.4    Zhou, J.J.5    Song, J.B.6    Shao, F.W.7    Duan, H.W.8
  • 23
    • 84873827171 scopus 로고    scopus 로고
    • I-Motif-Programmed Functionalization of DNA Nanocircles
    • Li, T.; Famulok, M. i-Motif-Programmed Functionalization of DNA Nanocircles J. Am. Chem. Soc. 2013, 135, 1593-1599
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 1593-1599
    • Li, T.1    Famulok, M.2
  • 24
    • 0026512728 scopus 로고
    • Formation of Novel Hairpin Structures by Telomeric C-Strand Oligonucleotides
    • Ahmed, S.; Henderson, E. Formation of Novel Hairpin Structures by Telomeric C-Strand Oligonucleotides Nucleic Acids Res. 1992, 20, 507-511
    • (1992) Nucleic Acids Res. , vol.20 , pp. 507-511
    • Ahmed, S.1    Henderson, E.2
  • 25
    • 0028364089 scopus 로고
    • Intramolecular Folding of a Fragment of the Cytosine-Rich Strand of Telomeric DNA into an i-Motif
    • Leroy, J. L.; Guéron, M.; Mergny, J. L.; Hélène, C. Intramolecular Folding of a Fragment of the Cytosine-Rich Strand of Telomeric DNA into an i-Motif Nucleic Acids Res. 1994, 22, 1600-1606
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1600-1606
    • Leroy, J.L.1    Guéron, M.2    Mergny, J.L.3    Hélène, C.4
  • 27
    • 77951088589 scopus 로고    scopus 로고
    • An Electrochemically Actuated Reversible DNA Switch
    • Yang, Y.; Liu, G.; Liu, H. J.; Li, D.; Fan, C. H.; Liu, D. S. An Electrochemically Actuated Reversible DNA Switch Nano Lett. 2010, 10, 1393-1397
    • (2010) Nano Lett. , vol.10 , pp. 1393-1397
    • Yang, Y.1    Liu, G.2    Liu, H.J.3    Li, D.4    Fan, C.H.5    Liu, D.S.6
  • 28
    • 0033514429 scopus 로고    scopus 로고
    • Fluorescence Energy Transfer as a Probe for Tetraplex Formation: The i-Motif
    • Mergny, J. L. Fluorescence Energy Transfer as a Probe for Tetraplex Formation: The i-Motif Biochemistry 1999, 38, 1573-1581
    • (1999) Biochemistry , vol.38 , pp. 1573-1581
    • Mergny, J.L.1
  • 30
    • 77249123847 scopus 로고    scopus 로고
    • Formation of i-Motif Structure at Neutral and Slightly Alkaline pH
    • Zhou, J.; Wei, C. Y.; Jia, G. Q.; Wang, X. L.; Feng, Z. C.; Li, C. Formation of i-Motif Structure at Neutral and Slightly Alkaline pH Mol. BioSyst. 2010, 6, 580-586
    • (2010) Mol. BioSyst. , vol.6 , pp. 580-586
    • Zhou, J.1    Wei, C.Y.2    Jia, G.Q.3    Wang, X.L.4    Feng, Z.C.5    Li, C.6
  • 31
    • 84871604349 scopus 로고    scopus 로고
    • Study of pH-Induced Folding and Unfolding Kinetics of the DNA i-Motif by Stopped-Flow Circular Dichroism
    • Chen, C.; Li, M.; Xing, Y. Z.; Li, Y. M.; Joedecke, C. C.; Jin, J.; Yang, Z. Q.; Liu, D. S. Study of pH-Induced Folding and Unfolding Kinetics of the DNA i-Motif by Stopped-Flow Circular Dichroism Langmuir 2012, 28, 17743-17748
    • (2012) Langmuir , vol.28 , pp. 17743-17748
    • Chen, C.1    Li, M.2    Xing, Y.Z.3    Li, Y.M.4    Joedecke, C.C.5    Jin, J.6    Yang, Z.Q.7    Liu, D.S.8
  • 32
  • 35
    • 0034009520 scopus 로고    scopus 로고
    • Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling
    • Schuck, P. Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling Biophys. J. 2000, 78, 1606-1619
    • (2000) Biophys. J. , vol.78 , pp. 1606-1619
    • Schuck, P.1
  • 36
    • 0036707991 scopus 로고    scopus 로고
    • Modern Analytical Ultracentrifugation in Protein Science: A Tutorial Review
    • Lebowitz, J.; Lewis, M. S.; Schuck, P. Modern Analytical Ultracentrifugation in Protein Science: A Tutorial Review Protein Sci. 2002, 11, 2067-2079
    • (2002) Protein Sci. , vol.11 , pp. 2067-2079
    • Lebowitz, J.1    Lewis, M.S.2    Schuck, P.3
  • 38
    • 84855261964 scopus 로고    scopus 로고
    • Time-Resolved NMR Spectroscopic Studies of DNA i-Motif Folding Reveal Kinetic Partitioning
    • Lieblein, A. L.; Buck, J.; Schlepckow, K.; Fürtig, B.; Schwalbe, H. Time-Resolved NMR Spectroscopic Studies of DNA i-Motif Folding Reveal Kinetic Partitioning Angew. Chem., Int. Ed. 2012, 51, 250-253
    • (2012) Angew. Chem., Int. Ed. , vol.51 , pp. 250-253
    • Lieblein, A.L.1    Buck, J.2    Schlepckow, K.3    Fürtig, B.4    Schwalbe, H.5
  • 39
    • 0020176542 scopus 로고
    • A Constrained Regularization Method for Inverting Data Represented by Linear Algebraic or Integral Equations
    • Provencher, S. W. A Constrained Regularization Method for Inverting Data Represented by Linear Algebraic or Integral Equations Comput. Phys. Commun. 1982, 27, 213-227
    • (1982) Comput. Phys. Commun. , vol.27 , pp. 213-227
    • Provencher, S.W.1
  • 40
    • 0020176708 scopus 로고
    • Contin: A General Purpose Constrained Regularization Program for Inverting Noisy Linear Algebraic and Integral Equations
    • Provencher, S. W. Contin: a General Purpose Constrained Regularization Program for Inverting Noisy Linear Algebraic and Integral Equations Comput. Phys. Commun. 1982, 27, 229-242
    • (1982) Comput. Phys. Commun. , vol.27 , pp. 229-242
    • Provencher, S.W.1
  • 41
    • 0014231119 scopus 로고
    • Deoxyribonucleate Solutions: Sedimentation in a Density Gradient Partial Specific Volumes Density and Refractive Index Increments and Preferential Interactions
    • Cohen, G.; Eisenberg, H. Deoxyribonucleate Solutions: Sedimentation in a Density Gradient Partial Specific Volumes Density and Refractive Index Increments and Preferential Interactions Biopolymers 1968, 6, 1077-1100
    • (1968) Biopolymers , vol.6 , pp. 1077-1100
    • Cohen, G.1    Eisenberg, H.2
  • 43
    • 33645571094 scopus 로고    scopus 로고
    • Protein S Multimers and Monomers Each Have Direct Anticoagulant Activity
    • Heeb, M. J.; Schuck, P.; Xu, X. Protein S Multimers and Monomers Each Have Direct Anticoagulant Activity J. Thromb. Haemost. 2006, 4, 385-391
    • (2006) J. Thromb. Haemost. , vol.4 , pp. 385-391
    • Heeb, M.J.1    Schuck, P.2    Xu, X.3
  • 45
    • 0037452595 scopus 로고    scopus 로고
    • DNA Duplex-Quadruplex Exchange as the Basis for a Nanomolecular Machine
    • Alberti, P.; Mergny, J. L. DNA Duplex-Quadruplex Exchange as the Basis for a Nanomolecular Machine Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 1569-1573
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 1569-1573
    • Alberti, P.1    Mergny, J.L.2
  • 46
    • 0028028058 scopus 로고
    • Evidence for Intramolecularly Folded i-DNA Structures in Biologically Relevant CCC-Repeat Sequences
    • Manzini, G.; Yathindra, N.; Xodo, L. E. Evidence for Intramolecularly Folded i-DNA Structures in Biologically Relevant CCC-Repeat Sequences Nucleic Acids Res. 1994, 22, 4634-4640
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4634-4640
    • Manzini, G.1    Yathindra, N.2    Xodo, L.E.3
  • 47
    • 77955834763 scopus 로고    scopus 로고
    • Resolution and Characterization of the Structural Polymorphism of a Single Quadruplex-Forming Sequence
    • Dailey, M. M.; Miller, M. C.; Bates, P. J.; Lane, A. N.; Trent, J. O. Resolution and Characterization of the Structural Polymorphism of a Single Quadruplex-Forming Sequence Nucleic Acids Res. 2010, 38, 4877-4888
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4877-4888
    • Dailey, M.M.1    Miller, M.C.2    Bates, P.J.3    Lane, A.N.4    Trent, J.O.5
  • 48
    • 0034716937 scopus 로고    scopus 로고
    • The Solution Structure and Internal Motions of a Fragment of the Cytidine-Rich Strand of the Human Telomere
    • Phan, A. T.; Guéron, M.; Leroy, J. L. The Solution Structure and Internal Motions of a Fragment of the Cytidine-Rich Strand of the Human Telomere J. Mol. Biol. 2000, 299, 123-144
    • (2000) J. Mol. Biol. , vol.299 , pp. 123-144
    • Phan, A.T.1    Guéron, M.2    Leroy, J.L.3
  • 49
    • 0023788886 scopus 로고
    • Formation of Parallel Four-Stranded Complexes by Guanine-Rich Motifs in DNA and Its Implications for Meiosis
    • Sen, D.; Gilbert, W. Formation of Parallel Four-Stranded Complexes by Guanine-Rich Motifs in DNA and Its Implications for Meiosis Nature 1988, 334, 364-366
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.