Influence of pH, temperature and the cationic porphyrin TMPyP4 on the stability of the i-motif formed by the 5'-(C3TA2)4-3' sequence of the human telomere

International Journal of Biological Macromolecules

Volumn 49, Issue 4, 2011, Pages 729-736

  Fernández, Sergio ^a   Eritja, Ramon ^b   Aviñó, Anna ^b   Jaumot, Joaquim ^a   Gargallo, Raimundo ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

^b BIOMATERIALES Y NANOMEDICINA CIBER BBN   (Spain)

Author keywords

Human telomere; I Motif; Loops; Multivariate analysis; TMPyP4 binding

Indexed keywords

5,10,15,20 TETRA(N METHYL 4 PYRIDYL)PORPHIN; ADENINE; CATION; CYTOSINE; PORPHYRIN; THYMINE; UNCLASSIFIED DRUG;

ARTICLE; DNA DETERMINATION; DNA SEQUENCE; DNA STRUCTURE; MOLECULAR INTERACTION; PH; PHYSICAL CHEMISTRY; PROTEIN CONFORMATION; PROTEIN MOTIF; PROTEIN STABILITY; STOICHIOMETRY; STRUCTURE ANALYSIS; TELOMERE; TEMPERATURE;

EID: 80052279156     PISSN: 01418130     EISSN: 18790003     Source Type: Journal    
DOI: 10.1016/j.ijbiomac.2011.07.004     Document Type: Article

References (42)

1. Gueron M., Leroy J.L. Current Opinion in Structural Biology 2000, 10:326-331.
2. Peng Y., Wang X., Xiao Y., Feng L., Zhao C., Ren J., Qu X. Journal of the American Chemical Society 2009, 131:13813-13818.
3. Sharma J., Chhabra R., Yan H., Liu Y. Chemical Communications 2007, 477-479.
4. Burge S., Parkinson G.N., Hazel P., Todd A.K., Neidle S. Nucleic Acids Research 2006, 34:5402-5415.
5. Guo K., Pourpak A., Beetz-Rogers K., Gokhale V., Sun D., Hurley L.H. Journal of the American Chemical Society 2007, 129:10220-10228.
6. Simonsson T., Pribylova M., Vorlickova M. Biochemical and Biophysical Research Communications 2000, 278:158-166.
7. Kumar P., Verma A., Maiti S., Gargallo R., Chowdhury S. Biochemistry 2005, 44:16426-16434.
8. Khan N., Avino A., Tauler R., Gonzalez C., Eritja R., Gargallo R. Biochimie 2007, 89:1562-1572.
9. Xu Y., Sugiyama H. Nucleic Acids Research 2006, 34:949-954.
10. Saxena S., Bansal A., Kukreti S. Archives of Biochemistry and Biophysics 2008, 471:95-108.
11. Fedoroff O.Y., Rangan A., Chemeris V.V., Hurley L.H. Biochemistry 2000, 39:15083-15090.
12. Cimino-Reale G., Pascale E., Alvino E., Starace G., D'Ambrosio E. Journal of Biological Chemistry 2003, 278:2136-2140.
13. Zhou J., Wei C., Jia G., Wang X., Feng Z., Li C. Biochimie 2009, 91:1104-1111.
14. Gehring K., Leroy J.-L., Gueron M. Nature 1993, 363:561-565.
15. Cortes A., Huertas D., Fanti L., Pimpinelli S., Marsellach F.X., Pina B., Azorin F. EMBO Journal 1999, 18:3820-3833.
16. Lacroix L., Lienard H., Labourier E., Djavaheri-Mergny M., Lacoste J., Leffers H., Tazi J., Helene C., Mergny J.-L. Nucleic Acids Research 2000, 28:1564-1575.
17. Marsich E., Xodo L.E., Manzini G. European Journal of Biochemistry 1998, 258:93-99.
18. Zeng Z.-X., Zhao Y., Hao Y.-H., Tan Z. Journal of Molecular Recognition 2005, 18:267-271.
19. Huppert J.L. Quadruplex Nucleic Acids 2006, 208-223. The Royal Society of Chemistry, Cambridge. S. Neidle, S. Balasubramanian (Eds.).
20. Kanaori K., Shibayama N., Gohda K., Tajima K., Makino K. Nucleic Acids Research 2001, 29:831-840.
21. Ahmed S., Kintanar A., Henderson E. Nature Structural Biology 1994, 1:83-88.
22. Leroy J.L., Gueron M., Mergny J.L., Helene C. Nucleic Acids Research 1994, 22:1600-1606.
23. Manzini G., Yathindra N., Xodo L.E. Nucleic Acids Research 1994, 22:4634-4640.
24. Phan A.T., Leroy J.L. Journal of Biomolecular Structure & Dynamics 2000, 245-251.
25. Kaushik M., Suehl N., Marky L.A. Biophysical Chemistry 2007, 126:154-164.
26. Zhao Y., Zeng Z.-x., Kan Z.-y., Hao Y.-h., Tan Z., The Folding ChemBioChem 2005, 6:1957-1960.
27. Kaushik M., Prasad M., Kaushik S., Singh A., Kukreti S. Biopolymers 2009, 93:150-160.
28. Mergny J.L., Lacroix L., Han X.G., Leroy J.L., Helene C. Journal of the American Chemical Society 1995, 117:8887-8898.
29. Bucek P., Jaumot J., Aviñó A., Eritja R. Chemistry - A European Journal 2009, 15:12663-12671.
30. Jaumot J., Eritja R., Tauler R., Gargallo R. Nucleic Acids Research 2006, 34:206-216.
31. Allawi H.T., SantaLucia J. Biochemistry 1997, 36:10581-10594.
32. Dyson R., Kaderli S., Lawrence G.A., Maeder M., Zuberbühler A.D. Analytica Chimica Acta 1997, 353:381-393.
33. Jaumot J., Gargallo R., de Juan A., Tauler R. Chemometrics and Intelligent Laboratory Systems 2005, 76:101-110.
34. Tauler R. Chemometrics and Intelligent Laboratory Systems 1995, 30:133-146.
35. Bloomfield V.A., Crothers D.M., Tinoco I.J. Nucleic acids. Structures, Properties and Functions 2000, University Science Books, Sausalito, CA.
36. Broido M.S., Kearns D.R. Journal of the American Chemical Society 1982, 104:5207-5216.
37. Phan A.T., Gueron M., Leroy J.L. Journal of Molecular Biology 2000, 299:123-144.
38. Nonin-Lecomte S., Leroy J.L. Journal of Molecular Biology 2001, 309:491-506.
39. Dawson R.M.C., Elliott D.C., Elliott W.H., Jones K.M. Data for Biochemical Research 1989, Clarendon Press, Oxford.
40. Guedin A., Alberti P., Mergny J.-L. Nucleic Acids Research 2009, 37:5559-5567.
41. Weil J., Min T.P., Yang C., Wang S.R., Sutherland C., Sinha N., Kang C.H. Acta Crystallographica D: Biological Crystallography 1999, 55:422-429.
42. Phan A.T., Mergny J.L. Nucleic Acids Research 2002, 30:4618-4625.