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Volumn 4, Issue , 2013, Pages

Condensin i associates with structural and gene regulatory regions in vertebrate chromosomes

Author keywords

[No Author keywords available]

Indexed keywords

CONDENSIN; CONDENSIN I; UNCLASSIFIED DRUG;

EID: 84885135720     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms3537     Document Type: Article
Times cited : (59)

References (68)
  • 1
    • 33646177549 scopus 로고    scopus 로고
    • At the heart of the chromosome: SMC proteins in action
    • Hirano, T. At the heart of the chromosome: SMC proteins in action. Nat. Rev. Mol. Cell Biol. 7, 311-322 (2006).
    • (2006) Nat. Rev. Mol. Cell Biol. , vol.7 , pp. 311-322
    • Hirano, T.1
  • 2
    • 0029360376 scopus 로고
    • The SMC proteins and the coming of age of the chromosome scaffold hypothesis
    • Saitoh, N., Goldberg, I. & Earnshaw, W. C. The SMC proteins and the coming of age of the chromosome scaffold hypothesis. Bioessays 17, 759-766 (1995).
    • (1995) Bioessays , vol.17 , pp. 759-766
    • Saitoh, N.1    Goldberg, I.2    Earnshaw, W.C.3
  • 3
    • 84864752050 scopus 로고    scopus 로고
    • Universal organizers of chromosomes with diverse functions
    • Hirano, T. Condensins: Universal organizers of chromosomes with diverse functions. Genes Dev. 26, 1659-1678 (2012).
    • (2012) Genes Dev. , vol.26 , pp. 1659-1678
    • Condensins, H.T.1
  • 5
    • 17144390295 scopus 로고    scopus 로고
    • Organizing and segregating the genome
    • Hirano, T. C. Organizing and segregating the genome. Curr. Biol. 15, R265-r275 (2005).
    • (2005) Curr. Biol. , vol.15
    • Hirano, T.C.1
  • 6
    • 0035980681 scopus 로고    scopus 로고
    • Prokaryotic structural maintenance of chromosomes (SMC) proteins: Distribution, phylogeny, and comparison with MukBs and additional prokaryotic and eukaryotic coiled-coil proteins
    • Soppa, J. Prokaryotic structural maintenance of chromosomes (SMC) proteins: Distribution, phylogeny, and comparison with MukBs and additional prokaryotic and eukaryotic coiled-coil proteins. Gene 278, 253-264 (2001).
    • (2001) Gene , vol.278 , pp. 253-264
    • Soppa, J.1
  • 8
    • 84878533141 scopus 로고    scopus 로고
    • Crafting the chromosome landscape
    • Piazza, I., Haering, C. & Rutkowska, A. Condensin: Crafting the chromosome landscape. Chromosoma 122, 175-190 (2013).
    • (2013) Chromosoma , vol.122 , pp. 175-190
    • Piazza, I.1    Haering, C.2    Condensin, R.A.3
  • 9
    • 0041440100 scopus 로고    scopus 로고
    • Condensin is required for nonhistone protein assembly and structural integrity of vertebrate mitotic chromosomes
    • Hudson, D. F., Vagnarelli, P., Gassmann, R. & Earnshaw, W. C. Condensin is required for nonhistone protein assembly and structural integrity of vertebrate mitotic chromosomes. Dev. Cell 5, 323-336 (2003).
    • (2003) Dev. Cell , vol.5 , pp. 323-336
    • Hudson, D.F.1    Vagnarelli, P.2    Gassmann, R.3    Earnshaw, W.C.4
  • 10
    • 84870491262 scopus 로고    scopus 로고
    • Chromatin crossbarring and chromosome condensation
    • Thadani, R., Uhlmann, F. & Heeger, S. Condensin, chromatin crossbarring and chromosome condensation. Curr. Biol. 22, R1012-r1021 (2012).
    • (2012) Curr. Biol. , vol.22
    • Thadani, R.1    Uhlmann, F.2    Condensin, H.S.3
  • 11
    • 13444302537 scopus 로고    scopus 로고
    • Distinct functions of condensin i and II in mitotic chromosome assembly
    • Hirota, T., Gerlich, D., Koch, B., Ellenberg, J. & Peters, J.-m. Distinct functions of condensin I and II in mitotic chromosome assembly. J. Cell Sci. 117, 6435-6445 (2004).
    • (2004) J. Cell Sci. , vol.117 , pp. 6435-6445
    • Hirota, T.1    Gerlich, D.2    Koch, B.3    Ellenberg, J.4    Peters, J.-M.5
  • 12
    • 32944477078 scopus 로고    scopus 로고
    • Condensin i stabilizes chromosomes mechanically through a dynamic interaction in live cells
    • Gerlich, D., Hirota, T., Koch, B., Peters, J.-m. & Ellenberg, J. Condensin I stabilizes chromosomes mechanically through a dynamic interaction in live cells. Curr. Biol. 16, 333-344 (2006).
    • (2006) Curr. Biol. , vol.16 , pp. 333-344
    • Gerlich, D.1    Hirota, T.2    Koch, B.3    Peters, J.-M.4    Ellenberg, J.5
  • 13
    • 0141987890 scopus 로고    scopus 로고
    • Differential contributions of condensin i and condensin II to mitotic chromosome architecture in vertebrate cells
    • Ono, T. et al. differential contributions of condensin I and condensin II to mitotic chromosome architecture in vertebrate cells. Cell 115, 109-121 (2003).
    • (2003) Cell , vol.115 , pp. 109-121
    • Ono, T.1
  • 14
    • 84879154670 scopus 로고    scopus 로고
    • Mitotic chromosomes are compacted laterally by KIF4 and condensin and axially by topoisomerase IIa
    • Samejima, K. et al. Mitotic chromosomes are compacted laterally by KIF4 and condensin and axially by topoisomerase IIa. J. Cell Biol. 199, 755-770 (2012).
    • (2012) J. Cell Biol. , vol.199 , pp. 755-770
    • Samejima, K.1
  • 15
    • 65549135760 scopus 로고    scopus 로고
    • Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. Subtilis
    • Gruber, S. & Errington, J. Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. subtilis. Cell 137, 685-696 (2009).
    • (2009) Cell , vol.137 , pp. 685-696
    • Gruber, S.1    Errington, J.2
  • 16
    • 65549115959 scopus 로고    scopus 로고
    • Closing the ring: A new twist to bacterial chromosome condensation
    • Thanbichler, M. Closing the ring: A new twist to bacterial chromosome condensation. Cell 137, 598-600 (2009).
    • (2009) Cell , vol.137 , pp. 598-600
    • Thanbichler, M.1
  • 17
    • 50049126078 scopus 로고    scopus 로고
    • Identification of cis-acting sites for condensin loading onto budding yeast chromosomes
    • D?Ambrosio, C. et al. Identification of cis-acting sites for condensin loading onto budding yeast chromosomes. Genes Dev. 22, 2215-2227 (2008).
    • (2008) Genes Dev. , vol.22 , pp. 2215-2227
    • Dambrosio, C.1
  • 18
    • 23344442664 scopus 로고    scopus 로고
    • Condensin binding at distinct and specific chromosomal sites in the Saccharomyces cerevisiae genome
    • Wang, B.-D., Eyre, D., Basrai, M., Lichten, M. & Strunnikov, A. condensin binding at distinct and specific chromosomal sites in the Saccharomyces cerevisiae genome. Mol. Cell Biol. 25, 7216-7225 (2005).
    • (2005) Mol. Cell Biol. , vol.25 , pp. 7216-7225
    • Wang, B.-D.1    Eyre, D.2    Basrai, M.3    Lichten, M.4    Strunnikov, A.5
  • 19
    • 1142290088 scopus 로고    scopus 로고
    • Condensin regulates rDNA silencing by modulating nucleolar Sir2p
    • Mach?́n, F. et al. Condensin regulates rDNA silencing by modulating nucleolar Sir2p. Curr. Biol. 14, 125-130 (2004).
    • (2004) Curr. Biol. , vol.14 , pp. 125-130
    • Mach́n, F.1
  • 20
    • 8544277216 scopus 로고    scopus 로고
    • Mutations in the Drosophila condensin subunit dCAP-g: Defining the role of condensin for chromosome condensation in mitosis and gene expression in interphase
    • Dej, K. J., Ahn, C. & Orr-weaver, T. L. Mutations in the Drosophila condensin subunit dCAP-g: Defining the role of condensin for chromosome condensation in mitosis and gene expression in interphase. Genetics 168, 895-906 (2004).
    • (2004) Genetics , vol.168 , pp. 895-906
    • Dej, K.J.1    Ahn, C.2    Orr-Weaver, T.L.3
  • 21
    • 42149095961 scopus 로고    scopus 로고
    • RBF1 promotes chromatin condensation through a conserved interaction with the Condensin II protein dCAP-D3
    • Longworth, M. S., Herr, A., Ji, J.-y. & Dyson, N. J. RBF1 promotes chromatin condensation through a conserved interaction with the Condensin II protein dCAP-D3. Genes Dev. 22, 1011-1024 (2008).
    • (2008) Genes Dev. , vol.22 , pp. 1011-1024
    • Longworth, M.S.1    Herr, A.2    Ji, J.-y.3    Dyson, N.J.4
  • 22
    • 84860577638 scopus 로고    scopus 로고
    • A shared role for RBF1 and dCAP-D3 in the regulation of transcription with consequences for innate immunity
    • Longworth, M. S. et al. A shared role for RBF1 and dCAP-D3 in the regulation of transcription with consequences for innate immunity. PLoS Genet. 8, e1002618 (2012).
    • (2012) PLoS Genet. , vol.8 , pp. 1002618
    • Longworth, M.S.1
  • 23
    • 12344307185 scopus 로고    scopus 로고
    • Mechanism of hsp70i gene bookmarking
    • Xing, H. et al. Mechanism of hsp70i gene bookmarking. Science 307, 421-423 (2005).
    • (2005) Science , vol.307 , pp. 421-423
    • Xing, H.1
  • 24
    • 55549118184 scopus 로고    scopus 로고
    • The TBP-pP2A mitotic complex bookmarks genes by preventing condensin action
    • Xing, H., Vanderford, N. L. & Sarge, K. D. The TBP-pP2A mitotic complex bookmarks genes by preventing condensin action. Nat. Cell Biol. 10, 1318-1323 (2008).
    • (2008) Nat. Cell Biol. , vol.10 , pp. 1318-1323
    • Xing, H.1    Vanderford, N.L.2    Sarge, K.D.3
  • 25
    • 0030930170 scopus 로고    scopus 로고
    • Marking of active genes on mitotic chromosomes
    • Michelotti, E. F., Sanford, S. & Levens, D. Marking of active genes on mitotic chromosomes. Nature 388, 895-899 (1997).
    • (1997) Nature , vol.388 , pp. 895-899
    • Michelotti, E.F.1    Sanford, S.2    Levens, D.3
  • 26
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-seq (MACS
    • Zhang, Y. et al. Model-based analysis of ChIP-seq (MACS). Genome Biol. 9, R137 (2008).
    • (2008) Genome Biol. , vol.9
    • Zhang, Y.1
  • 27
    • 84859436530 scopus 로고    scopus 로고
    • NCBI Reference Sequences (RefSeq): Current status new features and genome annotation policy
    • Pruitt, K. D., Tatusova, T., Brown, G. R. & Maglott, D. R. NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy. Nucleic Acids Res. 40, D130-D135 (2012).
    • (2012) Nucleic Acids Res. , vol.40
    • Pruitt, K.D.1    Tatusova, T.2    Brown, G.R.3    Maglott, D.R.4
  • 28
    • 58149189877 scopus 로고    scopus 로고
    • GtRNAdb: A database of transfer RNA genes detected in genomic sequence
    • Chan, P. P. & Lowe, T. M. GtRNAdb: A database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 37, D93-D97 (2009).
    • (2009) Nucleic Acids Res. , vol.37
    • Chan, P.P.1    Lowe, T.M.2
  • 29
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • Jurka, J. et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462-467 (2005).
    • (2005) Cytogenet. Genome Res. , vol.110 , pp. 462-467
    • Jurka, J.1
  • 30
    • 66249086197 scopus 로고    scopus 로고
    • Conserved features of cohesin binding along fission yeast chromosomes
    • Schmidt, C., Brookes, N. & Uhlmann, F. Conserved features of cohesin binding along fission yeast chromosomes. Genome Biol. 10, R52 (2009).
    • (2009) Genome Biol. , vol.10
    • Schmidt, C.1    Brookes, N.2    Uhlmann, F.3
  • 31
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M. D., McCarthy, D. J. & Smyth, G. K. edgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 32
    • 77956285927 scopus 로고    scopus 로고
    • Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences
    • Shang, W.-h. et al. Chickens possess centromeres with both extended tandem repeats and short non-tandem-repetitive sequences. Genome Res. 20, 1219-1228 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1219-1228
    • Shang, W.-H.1
  • 33
    • 65649107604 scopus 로고    scopus 로고
    • Condensin regulates the stiffness of vertebrate centromeres
    • Ribeiro, S. A. et al. Condensin regulates the stiffness of vertebrate centromeres. Mol. Biol. Cell 20, 2371-2380 (2009).
    • (2009) Mol. Biol. Cell , vol.20 , pp. 2371-2380
    • Ribeiro, S.A.1
  • 34
    • 77949357585 scopus 로고    scopus 로고
    • Kinetochore alignment within the metaphase plate is regulated by centromere stiffness and microtubule depolymerases
    • Jaqaman, K. et al. Kinetochore alignment within the metaphase plate is regulated by centromere stiffness and microtubule depolymerases. J. Cell Biol. 188, 665-679 (2010).
    • (2010) J. Cell Biol. , vol.188 , pp. 665-679
    • Jaqaman, K.1
  • 35
    • 84868534644 scopus 로고    scopus 로고
    • A role for CTCF and cohesin in subtelomere chromatin organization TERRA transcription and telomere end protection
    • Deng, Z. et al. A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection. EMBO J. 31, 4165-4178 (2012).
    • (2012) EMBO J. , vol.31 , pp. 4165-4178
    • Deng, Z.1
  • 36
    • 0036871217 scopus 로고    scopus 로고
    • Distribution of telomeric (TTAGGG)(n) sequences in avian chromosomes
    • Nanda, I. et al. Distribution of telomeric (TTAGGG)(n) sequences in avian chromosomes. Chromosoma 111, 215-227 (2002).
    • (2002) Chromosoma , vol.111 , pp. 215-227
    • Nanda, I.1
  • 37
    • 0030980312 scopus 로고    scopus 로고
    • Mitotic repression of the transcriptional machinery
    • Gottesfeld, J. M. & Forbes, D. J. Mitotic repression of the transcriptional machinery. Trends Biochem. Sci. 22, 197-202 (1997).
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 197-202
    • Gottesfeld, J.M.1    Forbes, D.J.2
  • 38
    • 84861204882 scopus 로고    scopus 로고
    • Contrasting roles of condensin i and condensin II in mitotic chromosome formation
    • Green, L. C. et al. Contrasting roles of condensin I and condensin II in mitotic chromosome formation. J. Cell Sci. 125, 1591-1604 (2012).
    • (2012) J. Cell Sci. , vol.125 , pp. 1591-1604
    • Green, L.C.1
  • 39
    • 50049112678 scopus 로고    scopus 로고
    • Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes
    • Haeusler, R. A., Pratt-hyatt, M., Good, P. D., Gipson, T. A. & Engelke, D. R. Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes. Genes Dev. 22, 2204-2214 (2008).
    • (2008) Genes Dev. , vol.22 , pp. 2204-2214
    • Haeusler, R.A.1    Pratt-Hyatt, M.2    Good, P.D.3    Gipson, T.A.4    Engelke, D.R.5
  • 40
    • 77954954200 scopus 로고    scopus 로고
    • PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression
    • Liu, W. et al. PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression. Nature 466, 508-512 (2010).
    • (2010) Nature , vol.466 , pp. 508-512
    • Liu, W.1
  • 41
    • 79959549133 scopus 로고    scopus 로고
    • Condensin association with histone H2A shapes mitotic chromosomes
    • Tada, K., Susumu, H., Sakuno, T. & Watanabe, Y. Condensin association with histone H2A shapes mitotic chromosomes. Nature 474, 477-483 (2011).
    • (2011) Nature , vol.474 , pp. 477-483
    • Tada, K.1    Susumu, H.2    Sakuno, T.3    Watanabe, Y.4
  • 42
    • 77957139539 scopus 로고    scopus 로고
    • Mediator and cohesin connect gene expression and chromatin architecture
    • Kagey, M. H. et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 467, 430-435 (2010).
    • (2010) Nature , vol.467 , pp. 430-435
    • Kagey, M.H.1
  • 43
    • 12644270188 scopus 로고    scopus 로고
    • Immunolocalization of CENP- A suggests a distinct nucleosome structure at the inner kinetochore plate of active centromeres
    • Warburton, P. E. et al. Immunolocalization of CENP-a suggests a distinct nucleosome structure at the inner kinetochore plate of active centromeres. Curr. Biol. 7, 901-904 (1997).
    • (1997) Curr. Biol. , vol.7 , pp. 901-904
    • Warburton, P.E.1
  • 44
    • 77953801741 scopus 로고    scopus 로고
    • A super-resolution map of the vertebrate kinetochore
    • Ribeiro, S. A. et al. A super-resolution map of the vertebrate kinetochore. Proc. Natl Acad. Sci. USA 107, 10484-10489 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 10484-10489
    • Ribeiro, S.A.1
  • 45
    • 77957779210 scopus 로고    scopus 로고
    • Ccq1p and the condensin proteins Cut3p and Cut14p prevent telomere entanglements in the fission yeast Schizosaccharomyces pombe
    • Motwani, T., Doris, R., Holmes, S. G. & Flory, M. R. Ccq1p and the condensin proteins Cut3p and Cut14p prevent telomere entanglements in the fission yeast Schizosaccharomyces pombe. Eukaryot. Cell 9, 1612-1621 (2010).
    • (2010) Eukaryot. Cell , vol.9 , pp. 1612-1621
    • Motwani, T.1    Doris, R.2    Holmes, S.G.3    Flory, M.R.4
  • 46
    • 40349097863 scopus 로고    scopus 로고
    • Condensin i reveals new insights on mouse meiotic chromosome structure and dynamics
    • Viera, Aet al. Condensin I reveals new insights on mouse meiotic chromosome structure and dynamics. PLoS One 2, e783 (2007).
    • (2007) PLoS One , vol.2 , pp. 783
    • Viera, A.1
  • 47
    • 33745045163 scopus 로고    scopus 로고
    • Mouse telocentric sequences reveal a high rate of homogenization and possible role in Robertsonian translocation
    • Kalitsis, P., Griffiths, B. & Choo, K. H. A. Mouse telocentric sequences reveal a high rate of homogenization and possible role in Robertsonian translocation. Proc. Natl Acad. Sci. USA 103, 8786-8791 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 8786-8791
    • Kalitsis, P.1    Griffiths, B.2    Choo, K.H.A.3
  • 48
    • 0017652886 scopus 로고
    • The structure of histone-Depleted metaphase chromosomes
    • Paulson, J. R. & Laemmli, U. K. The structure of histone-Depleted metaphase chromosomes. Cell 12, 817-828 (1977).
    • (1977) Cell , vol.12 , pp. 817-828
    • Paulson, J.R.1    Laemmli, U.K.2
  • 49
    • 0020681351 scopus 로고
    • Architecture of metaphase chromosomes and chromosome scaffolds
    • Earnshaw, W. C. & Laemmli, U. K. Architecture of metaphase chromosomes and chromosome scaffolds. J. Cell Biol. 96, 84-93 (1983).
    • (1983) J. Cell Biol. , vol.96 , pp. 84-93
    • Earnshaw, W.C.1    Laemmli, U.K.2
  • 50
    • 77956167600 scopus 로고    scopus 로고
    • The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics
    • Ohta, S. et al. The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics. Cell 142, 810-821 (2010).
    • (2010) Cell , vol.142 , pp. 810-821
    • Ohta, S.1
  • 51
    • 0013462065 scopus 로고
    • A highly conserved repetitive DNA sequence TTAGGG)n. Present at the telomeres of human chromosomes
    • Moyzis, R. K. et al. A highly conserved repetitive DNA sequence, (TTAGGG)n. present at the telomeres of human chromosomesProc. Natl Acad. Sci. USA 85, 6622-6626 (1988).
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 6622-6626
    • Moyzis, R.K.1
  • 52
    • 0025329846 scopus 로고
    • Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes
    • Meyne, J. et al. Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes. Chromosoma 99, 3-10 (1990).
    • (1990) Chromosoma , vol.99 , pp. 3-10
    • Meyne, J.1
  • 53
    • 0030874421 scopus 로고    scopus 로고
    • ATP-Dependent positive supercoiling of DNA by 13S condensin: A biochemical implication for chromosome condensation
    • Kimura, K. & Hirano, T. ATP-Dependent positive supercoiling of DNA by 13S condensin: A biochemical implication for chromosome condensation. Cell 90, 625-634 (1997).
    • (1997) Cell , vol.90 , pp. 625-634
    • Kimura, K.1    Hirano, T.2
  • 54
    • 51349084053 scopus 로고    scopus 로고
    • Molecular and genetic analysis of condensin function in vertebrate cells
    • Hudson, D. F. et al. Molecular and genetic analysis of condensin function in vertebrate cells. Mol. Biol. Cell 19, 3070-3079 (2008).
    • (2008) Mol. Biol. Cell , vol.19 , pp. 3070-3079
    • Hudson, D.F.1
  • 55
    • 78650673361 scopus 로고    scopus 로고
    • Streptavidin-binding peptide (SBP)-tagged SMC2 allows singlestep affinity fluorescence, blotting or purification of the condensin complex
    • Kim, J. H. et al. Streptavidin-binding peptide (SBP)-tagged SMC2 allows singlestep affinity fluorescence, blotting or purification of the condensin complex. BMC Biochem. 11, 50 (2010).
    • (2010) BMC Biochem. , vol.11 , pp. 50
    • Kim, J.H.1
  • 56
    • 81755171935 scopus 로고    scopus 로고
    • Global mapping of H3K4me1 and H3K4me3 reveals the chromatin state-based cell type-specific gene regulation in human Treg cells
    • Tian, Y. et al. Global mapping of H3K4me1 and H3K4me3 reveals the chromatin state-based cell type-specific gene regulation in human Treg cells. PLoS One 6, e27770 (2011).
    • (2011) PLoS One , vol.6 , pp. 27770
    • Tian, Y.1
  • 57
    • 10644268435 scopus 로고    scopus 로고
    • A physical map of the chicken genome
    • Wallis, J. W. et al. A physical map of the chicken genome. Nature 432, 761-764 (2004).
    • (2004) Nature , vol.432 , pp. 761-764
    • Wallis, J.W.1
  • 58
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 59
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.4
  • 60
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 61
    • 77951947707 scopus 로고    scopus 로고
    • ChIPpeakAnno: A Bioconductor package to annotate ChIP-seq and ChIP-chip data
    • Zhu, L. J. et al. ChIPpeakAnno: A Bioconductor package to annotate ChIP-seq and ChIP-chip data. BMC Bioinformatics 11, 237 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 237
    • Zhu, L.J.1
  • 62
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D. W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4, 44-57 (2008).
    • (2008) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 63
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R. & Hall, I. M. BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 64
    • 80052022462 scopus 로고    scopus 로고
    • Cistrome: An integrative platform for transcriptional regulation studies
    • Liu, T. et al. Cistrome: An integrative platform for transcriptional regulation studies. Genome Biol. 12, R83 (2011).
    • (2011) Genome Biol. , vol.12
    • Liu, T.1
  • 65
    • 0347755531 scopus 로고    scopus 로고
    • The UCSC Table Browser data retrieval tool
    • Karolchik, D. et al. The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 32, D493-D496 (2004).
    • (2004) Nucleic Acids Res. , vol.32
    • Karolchik, D.1
  • 66
    • 79953152547 scopus 로고    scopus 로고
    • EpiChIP: Gene-by-gene quantification of epigenetic modification levels
    • Hebenstreit, D. et al. EpiChIP: Gene-by-gene quantification of epigenetic modification levels. Nucleic Acids Res. 39, e27 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. 27
    • Hebenstreit, D.1
  • 67
    • 42649118131 scopus 로고    scopus 로고
    • Proteomic analysis of cartilage proteins
    • Wilson, R., Belluoccio, D. & Bateman, J. F. Proteomic analysis of cartilage proteins. Methods 45, 22-31 (2008).
    • (2008) Methods , vol.45 , pp. 22-31
    • Wilson, R.1    Belluoccio, D.2    Bateman, J.F.3
  • 68
    • 73249134322 scopus 로고    scopus 로고
    • Rapid evolution of mouse y centromere repeat DNA belies recent sequence stability
    • Pertile, M. D., Graham, A. N., Choo, K. H. A. & Kalitsis, P. Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability. Genome Res. 19, 2202-2213 (2009).
    • (2009) Genome Res. , vol.19 , pp. 2202-2213
    • Pertile, M.D.1    Graham, A.N.2    Choo, K.H.A.3    Kalitsis, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.