Development of a Cost-Effective Method for Capripoxvirus Genotyping Using Snapback Primer and dsDNA Intercalating Dye

PLoS ONE

Volumn 8, Issue 10, 2013, Pages

  Gelaye, Esayas ^a,e,f   Lamien, Charles Euloge ^a   Silber, Roland ^b   Tuppurainen, Eeva S M ^c   Grabherr, Reingard ^d   Diallo, Adama ^a  

^a INTERNATIONAL ATOMIC ENERGY AGENCY   (Austria)

^b AUSTRIAN AGENCY FOR HEALTH AND FOOD SAFETY   (Austria)

^c INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

^d UNIVERSITY OF AGRICULTURAL SCIENCES   (Austria)

^e UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

^f NATIONAL VETERINARY INSTITUTE   (Ethiopia)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; EVAGREEN DYE; INTERCALATING AGENT; PRIMER DNA; SNAPBACK PRIMER; UNCLASSIFIED DRUG;

AMPLICON; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CAPRIPOXVIRUS; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; DNA DETERMINATION; DNA HAIRPIN; DNA PROBE; GENOTYPE; HIGH RESOLUTION MELTING ANALYSIS; MELTING POINT; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; SENSITIVITY AND SPECIFICITY; VIRUS DETECTION;

ANIMALS; CAPRIPOXVIRUS; CATTLE; CATTLE DISEASES; COST-BENEFIT ANALYSIS; DNA; DNA, VIRAL; GENOME, VIRAL; GENOTYPING TECHNIQUES; GOAT DISEASES; GOATS; POXVIRIDAE INFECTIONS; SENSITIVITY AND SPECIFICITY; SHEEP; SHEEP DISEASES;

EID: 84885079288     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0075971     Document Type: Article

References (29)

1. Prozesky L, Barnard BJ, (1982) A study of the pathology of lumpy skin disease in cattle. Onderstepoort J Vet Res 49: 167-175.
2. Babiuk S, Bowden TR, Boyle DB, Wallace DB, Kitching RP, (2008) Capripoxviruses: an emerging worldwide threat to sheep, goats and cattle. Transbound Emerg Dis 55: 263-272.
3. The World Organisation for Animal Health (OIE) (2012) Manual of Diagnostic Tests and Vaccines for Terrestrial Animals. Paris: The World Organisation for Animal Health (OIE).
4. Tuppurainen ES, Oura CA, (2012) Review: lumpy skin disease: an emerging threat to Europe, the Middle East and Asia. Transbound Emerg Dis 59: 40-48.
5. Yan XM, Chu YF, Wu GH, Zhao ZX, Li J, et al. (2012) An outbreak of sheep pox associated with goat poxvirus in Gansu province of China. Vet Microbiol 156: 425-428.
6. Zhou T, Jia H, Chen G, He X, Fang Y, et al. (2012) Phylogenetic analysis of Chinese sheeppox and goatpox virus isolates. Virol J 9: 25.
7. Verma S, Verma LK, Gupta VK, Katoch VC, Dogra V, et al. (2011) Emerging Capripoxvirus disease outbreaks in Himachal Pradesh, a northern state of India. Transbound Emerg Dis 58: 79-85.
8. Oguzoglu TC, Alkan F, Ozkul A, Vural SA, Gungor AB, et al. (2006) A sheeppox virus outbreak in Central Turkey in 2003: isolation and identification of capripoxvirus ovis. Vet Res Commun 30: 965-971.
9. Tantawi HH, Shony MO, Hassan FK, (1979) Isolation and identification of the Sersenk strain of goat pox virus in Iraq. Trop Anim Health Prod 11: 208-210.
10. Stram Y, Kuznetzova L, Friedgut O, Gelman B, Yadin H, et al. (2008) The use of lumpy skin disease virus genome termini for detection and phylogenetic analysis. J Virol Methods 151: 225-229.
11. Yeruham I, Nir O, Braverman Y, Davidson M, Grinstein H, et al. (1995) Spread of lumpy skin disease in Israeli dairy herds. Vet Rec 137: 91-93.
12. Nawathe DR, Asagba MO, Abegunde A, Ajayi SA, Durkwa L, (1982) Some observations on the occurrence of lumpy skin disease in Nigeria. Zentralbl Veterinarmed B 29: 31-36.
13. Lamien CE, Le Goff C, Silber R, Wallace DB, Gulyaz V, et al. (2011) Use of the Capripoxvirus homologue of Vaccinia virus 30 kDa RNA polymerase subunit (RPO30) gene as a novel diagnostic and genotyping target: development of a classical PCR method to differentiate Goat poxvirus from Sheep poxvirus. Vet Microbiol 149: 30-39.
14. Lamien CE, Lelenta M, Goger W, Silber R, Tuppurainen E, et al. (2011) Real time PCR method for simultaneous detection, quantitation and differentiation of capripoxviruses. J Virol Methods 171: 134-140.
15. Le Goff C, Lamien CE, Fakhfakh E, Chadeyras A, Aba-Adulugba E, et al. (2009) Capripoxvirus G-protein-coupled chemokine receptor: a host-range gene suitable for virus animal origin discrimination. J Gen Virol 90: 1967-1977.
16. Bhanuprakash V, Indrani BK, Hosamani M, Singh RK, (2006) The current status of sheep pox disease. Comp Immunol Microbiol Infect Dis 29: 27-60.
17. Tulman ER, Afonso CL, Lu Z, Zsak L, Sur JH, et al. (2002) The genomes of sheeppox and goatpox viruses. J Virol 76: 6054-6061.
18. Kitching RP, Bhat PP, Black DN, (1989) The characterization of African strains of capripoxvirus. Epidemiol Infect 102: 335-343.
19. Hosamani M, Mondal B, Tembhurne PA, Bandyopadhyay SK, Singh RK, et al. (2004) Differentiation of sheep pox and goat poxviruses by sequence analysis and PCR-RFLP of P32 gene. Virus Genes 29: 73-80.
20. Wu Z, Yuan H, Zhang X, Liu W, Xu J, et al. (2011) Development and inter-laboratory validation of unlabeled probe melting curve analysis for detection of JAK2 V617F mutation in polycythemia vera. PLoS One 6: e26534.
21. Dames S, Pattison DC, Bromley LK, Wittwer CT, Voelkerding KV, (2007) Unlabeled probes for the detection and typing of herpes simplex virus. Clin Chem 53: 1847-1854.
22. Liew M, Pryor R, Palais R, Meadows C, Erali M, et al. (2004) Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin Chem 50: 1156-1164.
23. Wittwer CT, Reed GH, Gundry CN, Vandersteen JG, Pryor RJ, (2003) High-resolution genotyping by amplicon melting analysis using LCGreen. Clin Chem 49: 853-860.
24. Farrar JS, Palais RA, Wittwer CT, (2011) Snapback primer genotyping of the Gilbert syndrome UGT1A1 (TA)(n) promoter polymorphism by high-resolution melting. Clin Chem 57: 1303-1310.
25. Zhou L, Palais RA, Smith GD, Anderson D, Rowe LR, et al. (2010) Enrichment and detection of rare alleles by means of snapback primers and rapid-cycle PCR. Clin Chem 56: 814-822.
26. Zhou L, Errigo RJ, Lu H, Poritz MA, Seipp MT, et al. (2008) Snapback primer genotyping with saturating DNA dye and melting analysis. Clin Chem 54: 1648-1656.
27. Tulman ER, Afonso CL, Lu Z, Zsak L, Kutish GF, et al. (2001) Genome of lumpy skin disease virus. J Virol 75: 7122-7130.
28. Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
29. Diallo A, Viljoen GJ (2007) Genus Capripoxvirus. In: Mercer A., Schmidt A., Weber O. editors. Poxviruses. Basel, Switzerland: Birkhäuser. 167-181.