메뉴 건너뛰기




Volumn 29, Issue 3, 2012, Pages 985-993

A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome

Author keywords

coelacanth; exaptation; genome evolution; harbinger; Latimeria

Indexed keywords

TRANSPOSASE;

EID: 84863135322     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr267     Document Type: Article
Times cited : (36)

References (46)
  • 1
    • 77649267002 scopus 로고    scopus 로고
    • Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome
    • (11 co-authors)
    • Amemiya CT, Powers TP, Prohaska SJ, et al. (11 co-authors). 2010. Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome. Proc Natl Acad Sci USA. 107:3622-3627.
    • (2010) Proc Natl Acad Sci USA. , vol.107 , pp. 3622-3627
    • Amemiya, C.T.1    Powers, T.P.2    Prohaska, S.J.3
  • 3
    • 23144452801 scopus 로고    scopus 로고
    • GeneMark: Web software for gene finding in prokaryotes, eukaryotes and viruses
    • DOI 10.1093/nar/gki487
    • Besemer J, Borodovsky M. 2005. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33:W451-W454. (Pubitemid 44529960)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Besemer, J.1    Borodovsky, M.2
  • 6
    • 0016332173 scopus 로고
    • The nuclear DNA content and chromatin ultrastructure of the coelacanth Latimeria chalumnae
    • Cimino MC, Bahr GF. 1974. The nuclear DNA content and chromatin ultrastructure of the coelacanth Latimeria chalumnae. Exp Cell Res. 88:263-272.
    • (1974) Exp Cell Res. , vol.88 , pp. 263-272
    • Cimino, M.C.1    Bahr, G.F.2
  • 8
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • Doolittle WF, Sapienza C. 1980. Selfish genes, the phenotype paradigm and genome evolution. Nature 284:601-603. (Pubitemid 10070865)
    • (1980) Nature , vol.284 , Issue.5757 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 9
    • 42249106065 scopus 로고    scopus 로고
    • Sequence and organization of coelacanth neurohypophysial hormone genes: Evolutionary history of the vertebrate neurohypophysial hormone gene locus
    • Gwee PC, Amemiya CT, Brenner S, Venkatesh B. 2008. Sequence and organization of coelacanth neurohypophysial hormone genes: evolutionary history of the vertebrate neurohypophysial hormone gene locus. BMC Evol Biol. 8:93.
    • (2008) BMC Evol Biol. , vol.8 , pp. 93
    • Gwee, P.C.1    Amemiya, C.T.2    Brenner, S.3    Venkatesh, B.4
  • 10
    • 0024234855 scopus 로고
    • CLUSTAL: A package for performing multiple sequence alignment on a microcomputer
    • DOI 10.1016/0378-1119(88)90330-7
    • Higgins DG, Sharp PM. 1988. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237-244. (Pubitemid 19033800)
    • (1988) Gene , vol.73 , Issue.1 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 12
    • 17044393500 scopus 로고    scopus 로고
    • The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths
    • Inoue JG, Miya M, Venkatesh B, Nishida M. 2005. The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths. Gene 349:227-235.
    • (2005) Gene , vol.349 , pp. 227-235
    • Inoue, J.G.1    Miya, M.2    Venkatesh, B.3    Nishida, M.4
  • 13
    • 34547596338 scopus 로고    scopus 로고
    • MiPred: Classification of real and pseudo microRNA precursors using random forest prediction model with combined features
    • Jiang P, Wu H, Wang W, Ma W, Sun X, Lu Z. 2007. MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res. 35:W339-W344.
    • (2007) Nucleic Acids Res. , vol.35
    • Jiang, P.1    Wu, H.2    Wang, W.3    Ma, W.4    Sun, X.5    Lu, Z.6
  • 16
    • 0033288597 scopus 로고    scopus 로고
    • Molecular paleontology of transposable elements from Arabidopsis thaliana
    • Kapitonov VV, Jurka J. 1999. Molecular paleontology of transposable elements from Arabidopsis thaliana. Genetica 107:27-37. (Pubitemid 129574948)
    • (1999) Genetica , vol.107 , Issue.1-3 , pp. 27-37
    • Kapitonov, V.V.1    Jurka, J.2
  • 17
    • 2542567200 scopus 로고    scopus 로고
    • Harbinger transposons and an ancient HARBI1 gene derived from a transposase
    • DOI 10.1089/104454904323090949
    • Kapitonov VV, Jurka J. 2004. Harbinger transposons and an ancient HARBI1 gene derived from a transposase. DNA Cell Biol. 23:311-324. (Pubitemid 38703708)
    • (2004) DNA and Cell Biology , vol.23 , Issue.5 , pp. 311-324
    • Kapitonov, V.V.1    Jurka, J.2
  • 18
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent WJ. 2002. BLAT-the BLAST-like alignment tool. Genome Res. 12:656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 20
    • 85157961642 scopus 로고    scopus 로고
    • The hAT and CACTA superfamilies of plant transposons
    • Craig N, Craigie R, Gellert M, Lambowitz A, editors Washington, DC: ASM Press.
    • Kunze R, Weil C. 2002. The hAT and CACTA superfamilies of plant transposons. In: Craig N, Craigie R, Gellert M, Lambowitz A, editors. Mobile DNA II. Washington, DC: ASM Press. p. 565-610.
    • (2002) Mobile DNA II , pp. 565-610
    • Kunze, R.1    Weil, C.2
  • 22
    • 29144453390 scopus 로고    scopus 로고
    • Gene identification in novel eukaryotic genomes by self-training algorithm
    • DOI 10.1093/nar/gki937
    • Lomsadze A, Ter-Hovhannisyan V, Chernoff YO, Borodovsky M. 2005. Gene identification in novel eukaryotic genomes by selftraining algorithm. Nucleic Acids Res. 33:6494-6506. (Pubitemid 41806413)
    • (2005) Nucleic Acids Research , vol.33 , Issue.20 , pp. 6494-6506
    • Lomsadze, A.1    Ter-Hovhannisyan, V.2    Chernoff, Y.O.3    Borodovsky, M.4
  • 24
  • 25
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • DOI 10.1126/science.1089370
    • Lynch M, Conery JS. 2003. The origins of genome complexity. Science 302:1401-1404. (Pubitemid 37452183)
    • (2003) Science , vol.302 , Issue.5649 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 27
    • 79957599226 scopus 로고    scopus 로고
    • Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the Medaka fish
    • Mongin E, Auer TO, Bourrat F, Gruhl F, Dewar K, Blanchette M, Wittbrodt J, Ettwiller L. 2011. Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the Medaka fish. PLoS One 6:e19747.
    • (2011) PLoS One , vol.6
    • Mongin, E.1    Auer, T.O.2    Bourrat, F.3    Gruhl, F.4    Dewar, K.5    Blanchette, M.6    Wittbrodt, J.7    Ettwiller, L.8
  • 28
    • 33745620751 scopus 로고    scopus 로고
    • Functional noncoding sequences derived from SINEs in the mammalian genome
    • DOI 10.1101/gr.5255506
    • Nishihara H, Smit AF, Okada N. 2006. Functional noncoding sequences derived from SINEs in the mammalian genome. Genome Res. 16:864-874. (Pubitemid 43992910)
    • (2006) Genome Research , vol.16 , Issue.7 , pp. 864-874
    • Nishihara, H.1    Smit, A.F.A.2    Okada, N.3
  • 29
  • 30
    • 0018857680 scopus 로고
    • Selfish DNA: The ultimate parasite
    • Orgel LE, Crick FH. 1980. Selfish DNA: the ultimate parasite. Nature 284:604-607. (Pubitemid 10070866)
    • (1980) Nature , vol.284 , Issue.5757 , pp. 604-607
    • Orgel, L.E.1    Crick, F.H.C.2
  • 31
    • 34250729886 scopus 로고    scopus 로고
    • Origin and evolution of human microRNAs from transposable elements
    • DOI 10.1534/genetics.107.072553
    • Piriyapongsa J, Marino-Ramirez L, Jordan IK. 2007. Origin and evolution of human microRNAs from transposable elements. Genetics 176:1323-1337. (Pubitemid 46961124)
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1323-1337
    • Piriyapongsa, J.1    Marino-Ramirez, L.2    Jordan, I.K.3
  • 32
    • 1842485064 scopus 로고    scopus 로고
    • Evidence for a Hox14 paralog group in vertebrates [2]
    • DOI 10.1016/j.cub.2004.02.015, PII S0960982204001150
    • Powers TP, Amemiya CT. 2004. Evidence for a Hox14 paralog group in vertebrates. Curr Biol. 14:R183-R184. (Pubitemid 38431157)
    • (2004) Current Biology , vol.14 , Issue.5
    • Powers, T.P.1    Amemiya, C.T.2
  • 33
    • 29144455282 scopus 로고    scopus 로고
    • De novo identification of repeat families in large genomes
    • DOI 10.1093/bioinformatics/bti1018
    • Price AL, Jones NC, Pevzner PA. 2005. De novo identification of repeat families in large genomes. Bioinformatics 21(Suppl 1):i351-i358. (Pubitemid 41794508)
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Price, A.L.1    Jones, N.C.2    Pevzner, P.A.3
  • 34
    • 84863179416 scopus 로고    scopus 로고
    • MapToGenome: A comparative genomic tool that aligns transcript maps to sequenced genomes
    • Putta S, Smith JJ, Staben C, Voss SR. 2007. MapToGenome: a comparative genomic tool that aligns transcript maps to sequenced genomes. Evol Bioinform Online. 3:15-25.
    • (2007) Evol Bioinform Online. , vol.3 , pp. 15-25
    • Putta, S.1    Smith, J.J.2    Staben, C.3    Voss, S.R.4
  • 35
    • 77952844078 scopus 로고    scopus 로고
    • The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates
    • Sela N, Kim E, Ast G. 2010. The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates. Genome Biol. 11:R59.
    • (2010) Genome Biol. , vol.11
    • Sela, N.1    Kim, E.2    Ast, G.3
  • 40
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL̈X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882. (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 41
    • 0015921241 scopus 로고
    • Nuclear DNA contents of coelacanth erythrocytes
    • Thomson KS, Gall JG, Coggins LW. 1973. Nuclear DNA contents of coelacanth erythrocytes. Nature 241:126.
    • (1973) Nature , vol.241 , pp. 126
    • Thomson, K.S.1    Gall, J.G.2    Coggins, L.W.3
  • 42
    • 33748936552 scopus 로고    scopus 로고
    • Turning junk into gold: Domestication of transposable elements and the creation of new genes in eukaryotes
    • Volff JN. 2006. Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes. Bioessays 28:913-922.
    • (2006) Bioessays , vol.28 , pp. 913-922
    • Volff, J.N.1
  • 43
    • 85158023800 scopus 로고    scopus 로고
    • MuDR/Mu transposable elements of maize
    • Craig N, Craigie R, Gellert M, Lambowitz A, editors Washington (DC): ASM Press
    • Walbot V, Rudenko G. 2002. MuDR/Mu transposable elements of maize. In: Craig N, Craigie R, Gellert M, Lambowitz A, editors. Mobile DNA II. Washington (DC): ASM Press. p. 533-564.
    • (2002) Mobile DNA II , pp. 533-564
    • Walbot, V.1    Rudenko, G.2
  • 45
    • 33751009398 scopus 로고    scopus 로고
    • SnoSeeker: An advanced computational package for screening of guide and orphan snoRNA genes in the human genome
    • DOI 10.1093/nar/gkl672
    • Yang JH, Zhang XC, Huang ZP, Zhou H, Huang MB, Zhang S, Chen YQ, Qu LH. 2006. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. Nucleic Acids Res. 34:5112-5123. (Pubitemid 44742476)
    • (2006) Nucleic Acids Research , vol.34 , Issue.18 , pp. 5112-5123
    • Yang, J.-H.1    Zhang, X.-C.2    Huang, Z.-P.3    Zhou, H.4    Huang, M.-B.5    Zhang, S.6    Chen, Y.-Q.7    Qu, L.-H.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.