메뉴 건너뛰기




Volumn 6, Issue 5, 2013, Pages 1646-1660

Diversification of SUMO-activating enzyme in arabidopsis: Implications in SUMO conjugation

Author keywords

abiotic stress; conjugation rate; E1 activating enzyme; gene duplication; regulation; subcellular localization

Indexed keywords

ARABIDOPSIS;

EID: 84885038791     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1093/mp/sst049     Document Type: Article
Times cited : (42)

References (53)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal, F., Zardoya, R., and Posada, D. (2005). ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 21, 2104-2105.
    • (2005) Bioinformatics. , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 4
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihoodratio test for branches: A fast, accurate, and powerful alternative
    • Anisimova, M., and Gascuel, O. (2006). Approximate likelihoodratio test for branches: a fast, accurate, and powerful alternative. Syst. Biol. 55, 539-552.
    • (2006) Syst. Biol. , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 5
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
    • Arnold, K., Bordoli, L., Kopp, J., and Schwede, T. (2006). The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics. 22, 195-201.
    • (2006) Bioinformatics. , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 6
    • 2442713832 scopus 로고    scopus 로고
    • GeneWise and Genomewise
    • Birney, E., Clamp, M., and Durbin, R. (2004). GeneWise and Genomewise. Genome Res. 14, 988-995.
    • (2004) Genome Res. , vol.14 , pp. 988-995
    • Birney, E.1    Clamp, M.2    Durbin, R.3
  • 7
    • 0037313579 scopus 로고    scopus 로고
    • A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
    • Blanc, G., Hokamp, K., and Wolfe, K.H. (2003). A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13, 137-144.
    • (2003) Genome Res. , vol.13 , pp. 137-144
    • Blanc, G.1    Hokamp, K.2    Wolfe, K.H.3
  • 8
    • 31544432283 scopus 로고    scopus 로고
    • Regulation of SUMOylation by reversible oxidation of SUMO conjugating enzymes
    • Bossis, G., and Melchior, F. (2006). Regulation of SUMOylation by reversible oxidation of SUMO conjugating enzymes. Mol. Cell. 21, 349-357.
    • (2006) Mol. Cell. , vol.21 , pp. 349-357
    • Bossis, G.1    Melchior, F.2
  • 9
    • 79957704504 scopus 로고    scopus 로고
    • Distinctive properties of Arabidopsis SUMO paralogues support the in vivo predominant role of AtSUMO1/2 isoforms
    • Castaño-Miquel, L., Seguí, J., and Lois, L.M. (2011). Distinctive properties of Arabidopsis SUMO paralogues support the in vivo predominant role of AtSUMO1/2 isoforms. Biochem. J. 436, 581-590.
    • (2011) Biochem. J. , vol.436 , pp. 581-590
    • Castaño-Miquel, L.1    Seguí, J.2    Lois, L.M.3
  • 10
    • 35748968208 scopus 로고    scopus 로고
    • The Arabidopsis E3 SUMO ligase SIZ1 regulates plant growth and drought responses
    • Catala, R., Ouyang, J., Abreu, I.A., Hu, Y., Seo, H., Zhang, X., and Chua, N.H. (2007). The Arabidopsis E3 SUMO ligase SIZ1 regulates plant growth and drought responses. Plant Cell. 19, 2952-2966.
    • (2007) Plant Cell. , vol.19 , pp. 2952-2966
    • Catala, R.1    Ouyang, J.2    Abreu, I.A.3    Hu, Y.4    Seo, H.5    Zhang, X.6    Chua, N.H.7
  • 11
    • 77952538007 scopus 로고    scopus 로고
    • Response and transcriptional regulation of rice SUMOylation system during development and stress conditions
    • Chaikam, V., and Karlson, D.T. (2010). Response and transcriptional regulation of rice SUMOylation system during development and stress conditions. BMB Rep. 43, 103-109.
    • (2010) BMB Rep. , vol.43 , pp. 103-109
    • Chaikam, V.1    Karlson, D.T.2
  • 13
    • 72649096546 scopus 로고    scopus 로고
    • Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae)
    • Couvreur, T.L., Franzke, A., Al-Shehbaz, I.A., Bakker, F.T., Koch, M.A., and Mummenhoff, K. (2010). Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae). Mol. Biol. Evol. 27, 55-71.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 55-71
    • Couvreur, T.L.1    Franzke, A.2    Al-Shehbaz, I.A.3    Bakker, F.T.4    Koch, M.A.5    Mummenhoff, K.6
  • 14
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski, T., Stitt, M., Altmann, T., Udvardi, M.K., and Scheible, W.R. (2005). Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139, 5-17.
    • (2005) Plant Physiol. , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 15
  • 16
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 0035231610 scopus 로고    scopus 로고
    • The thermodynamic linkage between protein structure, stability, and function
    • Freire, E. (2001). The thermodynamic linkage between protein structure, stability, and function. Methods Mol. Biol. 168, 37-68.
    • (2001) Methods Mol. Biol. , vol.168 , pp. 37-68
    • Freire, E.1
  • 18
    • 78649396592 scopus 로고    scopus 로고
    • The SUMO pathway: Emerging mechanisms that shape specificity, conjugation and recognition
    • Gareau, J.R., and Lima, C.D. (2010). The SUMO pathway: emerging mechanisms that shape specificity, conjugation and recognition. Nat. Rev. Mol. Cell Biol. 11, 861-871.
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 861-871
    • Gareau, J.R.1    Lima, C.D.2
  • 20
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., and Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 21
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W., and Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 23
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J.P., and Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 17, 754-755.
    • (2001) Bioinformatics. , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 24
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones, D.T., Taylor, W.R., and Thornton, J.M. (1992). The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8, 275-282.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 25
    • 57749115920 scopus 로고    scopus 로고
    • XopD SUMO protease affects host transcription, promotes pathogen growth, and delays symptom development in Xanthomonas-infected tomato leaves
    • Kim, J.G., Taylor, K.W., Hotson, A., Keegan, M., Schmelz, E.A., and Mudgett, M.B. (2008). XopD SUMO protease affects host transcription, promotes pathogen growth, and delays symptom development in Xanthomonas-infected tomato leaves. Plant Cell. 20, 1915-1929.
    • (2008) Plant Cell. , vol.20 , pp. 1915-1929
    • Kim, J.G.1    Taylor, K.W.2    Hotson, A.3    Keegan, M.4    Schmelz, E.A.5    Mudgett, M.B.6
  • 26
    • 0037470238 scopus 로고    scopus 로고
    • The small ubiquitin-like modifier (SUMO) protein modification system in Arabidopsis: Accumulation of SUMO1 and -2 conjugates is increased by stress
    • Kurepa, J., Walker, J.M., Smalle, J., Gosink, M.M., Davis, S.J., Durham, T.L., Sung, D.Y., and Vierstra, R.D. (2003). The small ubiquitin-like modifier (SUMO) protein modification system in Arabidopsis: accumulation of SUMO1 and -2 conjugates is increased by stress. J. Biol. Chem. 278, 6862-6872.
    • (2003) J. Biol. Chem. , vol.278 , pp. 6862-6872
    • Kurepa, J.1    Walker, J.M.2    Smalle, J.3    Gosink, M.M.4    Davis, S.J.5    Durham, T.L.6    Sung, D.Y.7    Vierstra, R.D.8
  • 27
    • 47549111312 scopus 로고    scopus 로고
    • Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes
    • Lee, I., and Schindelin, H. (2008). Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes. Cell. 134, 268-278.
    • (2008) Cell. , vol.134 , pp. 268-278
    • Lee, I.1    Schindelin, H.2
  • 28
    • 76449110686 scopus 로고    scopus 로고
    • Diversity of the SUMOylation machinery in plants
    • Lois, L.M. (2010). Diversity of the SUMOylation machinery in plants. Biochem. Soc. Trans. 38, 60-64.
    • (2010) Biochem. Soc. Trans. , vol.38 , pp. 60-64
    • Lois, L.M.1
  • 29
    • 14844291338 scopus 로고    scopus 로고
    • Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1
    • Lois, L.M., and Lima, C.D. (2005). Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1. EMBO J. 24, 439-451.
    • (2005) EMBO J. , vol.24 , pp. 439-451
    • Lois, L.M.1    Lima, C.D.2
  • 30
    • 57749112122 scopus 로고    scopus 로고
    • Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes
    • Long, Y., Zhao, L., Niu, B., Su, J., Wu, H., Chen, Y., Zhang, Q., Guo, J., Zhuang, C., Mei, M., et al. (2008). Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes. Proc. Natl Acad. Sci. U S A. 105, 18871-18876.
    • (2008) Proc. Natl Acad. Sci. U S A. , vol.105 , pp. 18871-18876
    • Long, Y.1    Zhao, L.2    Niu, B.3    Su, J.4    Wu, H.5    Chen, Y.6    Zhang, Q.7    Guo, J.8    Zhuang, C.9    Mei, M.10
  • 31
    • 77950865637 scopus 로고    scopus 로고
    • Sumoylation and other ubiquitin-like post-translational modifications in plants
    • Miura, K., and Hasegawa, P.M. (2010). Sumoylation and other ubiquitin-like post-translational modifications in plants. Trends Cell Biol. 20, 223-232.
    • (2010) Trends Cell Biol. , vol.20 , pp. 223-232
    • Miura, K.1    Hasegawa, P.M.2
  • 33
    • 79952348779 scopus 로고    scopus 로고
    • Importin alpha/ beta mediates nuclear import of individual SUMO E1 subunits and of the holo-enzyme
    • Moutty, M.C., Sakin, V., and Melchior, F. (2011). Importin alpha/ beta mediates nuclear import of individual SUMO E1 subunits and of the holo-enzyme. Mol. Biol. Cell. 22, 652-660.
    • (2011) Mol. Biol. Cell. , vol.22 , pp. 652-660
    • Moutty, M.C.1    Sakin, V.2    Melchior, F.3
  • 34
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassays with tobacco tissue culture
    • Murashige, T., and Skoog, F. (1962). A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol. Plant. 15, 473-497.
    • (1962) Physiol. Plant. , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 35
    • 0142028822 scopus 로고    scopus 로고
    • A nuclear protease required for flowering-time regulation in Arabidopsis reduces the abundance of SMALL UBIQUITINRELATED MODIFIER conjugates
    • Murtas, G., Reeves, P.H., Fu, Y.F., Bancroft, I., Dean, C., and Coupland, G. (2003). A nuclear protease required for flowering-time regulation in Arabidopsis reduces the abundance of SMALL UBIQUITINRELATED MODIFIER conjugates. Plant Cell. 15, 2308-2319.
    • (2003) Plant Cell. , vol.15 , pp. 2308-2319
    • Murtas, G.1    Reeves, P.H.2    Fu, Y.F.3    Bancroft, I.4    Dean, C.5    Coupland, G.6
  • 37
    • 84861482416 scopus 로고    scopus 로고
    • Update on sumoylation: Defining core components of the plant SUMO conjugation system by phylogenetic comparison
    • Novatchkova, M., Tomanov, K., Hofmann, K., Stuible, H.-P., and Bachmair, A. (2012). Update on sumoylation: defining core components of the plant SUMO conjugation system by phylogenetic comparison. New Phytol. 195, 23-31.
    • (2012) New Phytol. , vol.195 , pp. 23-31
    • Novatchkova, M.1    Tomanov, K.2    Hofmann, K.3    Stuible, H.-P.4    Bachmair, A.5
  • 38
    • 77249138804 scopus 로고    scopus 로고
    • Active site remodelling accompanies thioester bond formation in the SUMO E1
    • Olsen, S.K., Capili, A.D., Lu, X., Tan, D.S., and Lima, C.D. (2010). Active site remodelling accompanies thioester bond formation in the SUMO E1. Nature. 463, 906-912.
    • (2010) Nature. , vol.463 , pp. 906-912
    • Olsen, S.K.1    Capili, A.D.2    Lu, X.3    Tan, D.S.4    Lima, C.D.5
  • 39
    • 79960596484 scopus 로고    scopus 로고
    • Arabidopsis nitrate reductase activity is stimulated by the E3 SUMO ligase AtSIZ1
    • Park, B.S., Song, J.T., and Seo, H.S. (2011). Arabidopsis nitrate reductase activity is stimulated by the E3 SUMO ligase AtSIZ1. Nature Commun. 2, 400.
    • (2011) Nature Commun. , vol.2 , pp. 400
    • Park, B.S.1    Song, J.T.2    Seo, H.S.3
  • 42
    • 0037663875 scopus 로고    scopus 로고
    • US National Institutes of Health, Bethesda, MD, USA
    • Rasband, W.S. (1997-2009). ImageJ. US National Institutes of Health, Bethesda, MD, USA, available online at http://rsb.info. nih.gov/ij/.
    • (1997) Image J.
    • Rasband, W.S.1
  • 43
    • 34548691835 scopus 로고    scopus 로고
    • Genetic analysis of SUMOylation in Arabidopsis: Conjugation of SUMO1 and SUMO2 to nuclear proteins is essential
    • Saracco, S.A., Miller, M.J., Kurepa, J., and Vierstra, R.D. (2007). Genetic analysis of SUMOylation in Arabidopsis: conjugation of SUMO1 and SUMO2 to nuclear proteins is essential. Plant Physiol. 145, 119-134.
    • (2007) Plant Physiol. , vol.145 , pp. 119-134
    • Saracco, S.A.1    Miller, M.J.2    Kurepa, J.3    Vierstra, R.D.4
  • 44
    • 81755162787 scopus 로고    scopus 로고
    • Twists and turns in ubiquitin-like protein conjugation cascades
    • Schulman, B.A. (2011). Twists and turns in ubiquitin-like protein conjugation cascades. Protein Sci. 20, 1941-1954.
    • (2011) Protein Sci. , vol.20 , pp. 1941-1954
    • Schulman, B.A.1
  • 45
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) Software Version 4.0
    • Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol. Biol. Evol.
    • (2007) Mol. Biol. Evol
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 46
    • 78651280828 scopus 로고    scopus 로고
    • Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence
    • Thangasamy, S., Guo, C.L., Chuang, M.H., Lai, M.H., Chen, J.C., and Jauh, G.Y. (2011). Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence. New Phytol. 189, 869-882.
    • (2011) New Phytol. , vol.189 , pp. 869-882
    • Thangasamy, S.1    Guo, C.L.2    Chuang, M.H.3    Lai, M.H.4    Chen, J.C.5    Jauh, G.Y.6
  • 47
    • 84885036812 scopus 로고    scopus 로고
    • SUMO modification of the E1 Cys domain inhibits its enzymatic activity
    • Truong, K., Lee, T., and Chen, Y. (2012a). SUMO modification of the E1 Cys domain inhibits its enzymatic activity. J. Biol. Chem.
    • (2012) J. Biol. Chem
    • Truong, K.1    Lee, T.2    Chen, Y.3
  • 48
    • 84871117932 scopus 로고    scopus 로고
    • Sumoylation of SAE2 C terminus regulates SAE nuclear localization
    • Truong, K., Lee, T.D., Li, B., and Chen, Y. (2012b). Sumoylation of SAE2 C terminus regulates SAE nuclear localization. J. Biol. Chem. 287, 42611-42619.
    • (2012) J. Biol. Chem. , vol.287 , pp. 42611-42619
    • Truong, K.1    Lee, T.D.2    Li, B.3    Chen, Y.4
  • 49
    • 79953027055 scopus 로고    scopus 로고
    • OsSIZ1 regulates the vegetative growth and reproductive development in rice
    • Wang, H.D., Makeen, K., Yan, Y., Cao, Y., Sun, S.B., and Xu, G.H. (2011). OsSIZ1 regulates the vegetative growth and reproductive development in rice. Plant Mol. Biol. Rep. 29, 411-417.
    • (2011) Plant Mol. Biol. Rep. , vol.29 , pp. 411-417
    • Wang, H.D.1    Makeen, K.2    Yan, Y.3    Cao, Y.4    Sun, S.B.5    Xu, G.H.6
  • 50
    • 34447337222 scopus 로고    scopus 로고
    • The intrinsic affinity between E2 and the Cys domain of E1 in ubiquitin-like modifications
    • Wang, J., Hu, W., Cai, S., Lee, B., Song, J., and Chen, Y. (2007). The intrinsic affinity between E2 and the Cys domain of E1 in ubiquitin-like modifications. Mol. Cell. 27, 228-237.
    • (2007) Mol. Cell. , vol.27 , pp. 228-237
    • Wang, J.1    Hu, W.2    Cai, S.3    Lee, B.4    Song, J.5    Chen, Y.6
  • 51
    • 67749104665 scopus 로고    scopus 로고
    • Conformational transition associated with E1-E2 interaction in small ubiquitin-like modifications
    • Wang, J., Lee, B., Cai, S., Fukui, L., Hu, W., and Chen, Y. (2009). Conformational transition associated with E1-E2 interaction in small ubiquitin-like modifications. J. Biol. Chem. 284, 20340-20348.
    • (2009) J. Biol. Chem. , vol.284 , pp. 20340-20348
    • Wang, J.1    Lee, B.2    Cai, S.3    Fukui, L.4    Hu, W.5    Chen, Y.6
  • 53
    • 77952566949 scopus 로고    scopus 로고
    • Mechanisms, regulation and consequences of protein SUMOylation
    • Wilkinson, K.A., and Henley, J.M. (2010). Mechanisms, regulation and consequences of protein SUMOylation. Biochem. J. 428, 133-145.
    • (2010) Biochem. J. , vol.428 , pp. 133-145
    • Wilkinson, K.A.1    Henley, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.