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Volumn 7, Issue 9, 2013, Pages 8011-8019

3D electron tomography of pretreated biomass informs atomic modeling of cellulose microfibrils

Author keywords

atomic modeling; biofuels; biomass nanostructure; cellulose microfibril; thermochemical pretreatment; transmission electron tomography

Indexed keywords

ATOMIC MODELING; COMPUTATIONAL METHODOLOGY; MACROMOLECULAR ARCHITECTURE; MATHEMATICAL DESCRIPTIONS; MICROFIBRIL; STRUCTURE PROPERTY RELATIONSHIPS; THERMOCHEMICAL PRETREATMENT; TRANSMISSION ELECTRON;

EID: 84884971096     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/nn4031542     Document Type: Article
Times cited : (67)

References (48)
  • 1
    • 77956505312 scopus 로고    scopus 로고
    • Compositional Analysis of Lignocellulosic Feedstocks. 1. Review and Description of Methods
    • Sluiter, J. B.; Ruiz, R. O.; Scarlata, C. J.; Sluiter, A. D.; Templeton, D. W. Compositional Analysis of Lignocellulosic Feedstocks. 1. Review and Description of Methods J Agric. Food. Chem. 2010, 58, 9043-9053
    • (2010) J Agric. Food. Chem. , vol.58 , pp. 9043-9053
    • Sluiter, J.B.1    Ruiz, R.O.2    Scarlata, C.J.3    Sluiter, A.D.4    Templeton, D.W.5
  • 2
    • 84864684972 scopus 로고    scopus 로고
    • Immunological Approaches to Plant Cell Wall and Biomass Characterization: Immunolocalization of Glycan Epitopes
    • Himmel, m. E. Methods in Molecular Biology; Humana Press, Springer: New York
    • Avci, U.; Pattathil, S.; Hahn, M. G. Immunological Approaches to Plant Cell Wall and Biomass Characterization: Immunolocalization of Glycan Epitopes. In Biomass Conversion: Methods and Protocols; Himmel, m. E., Ed.; Methods in Molecular Biology; Humana Press, Springer: New York, 2012; Vol. 908, pp 73-82.
    • (2012) Biomass Conversion: Methods and Protocols , vol.908 , pp. 73-82
    • Avci, U.1    Pattathil, S.2    Hahn, M.G.3
  • 3
    • 43849089884 scopus 로고    scopus 로고
    • Designing the Deconstruction of Plant Cell Walls
    • McCann, M. C.; Carpita, N. C. Designing the Deconstruction of Plant Cell Walls Curr. Opin. Plant Biol. 2008, 11, 314-320
    • (2008) Curr. Opin. Plant Biol. , vol.11 , pp. 314-320
    • McCann, M.C.1    Carpita, N.C.2
  • 5
    • 79959492513 scopus 로고    scopus 로고
    • Agriculture: Beyond Food versus Fuel
    • Graham-Rowe, D. Agriculture: Beyond Food versus Fuel Nature 2011, 474, S6-S8
    • (2011) Nature , vol.474
    • Graham-Rowe, D.1
  • 8
    • 79953781576 scopus 로고    scopus 로고
    • Molecular-Level Origins of Biomass Recalcitrance: Decrystallization Free Energies for Four Common Cellulose Polymorphs
    • Beckham, G. T.; Matthews, J. F.; Peters, B.; Bomble, Y. J.; Himmel, M. E.; Crowley, M. F. Molecular-Level Origins of Biomass Recalcitrance: Decrystallization Free Energies for Four Common Cellulose Polymorphs J. Phys. Chem. B 2011, 115, 4118-4127
    • (2011) J. Phys. Chem. B , vol.115 , pp. 4118-4127
    • Beckham, G.T.1    Matthews, J.F.2    Peters, B.3    Bomble, Y.J.4    Himmel, M.E.5    Crowley, M.F.6
  • 9
    • 80054056469 scopus 로고    scopus 로고
    • A Cellular Automaton Model of Crystalline Cellulose Hydrolysis by Cellulases
    • Warden, A.; Little, B.; Haritos, V. A Cellular Automaton Model of Crystalline Cellulose Hydrolysis by Cellulases Biotechnol. Biofuels 2011, 4, 39
    • (2011) Biotechnol. Biofuels , vol.4 , pp. 39
    • Warden, A.1    Little, B.2    Haritos, V.3
  • 10
    • 70349329560 scopus 로고    scopus 로고
    • Cellulose Hydrolysis in Evolving Substrate Morphologies I: A General Modeling Formalism
    • Zhou, W.; Schuttler, H. B.; Hao, Z. Q.; Xu, Y. Cellulose Hydrolysis in Evolving Substrate Morphologies I: A General Modeling Formalism Biotechnol. Bioeng. 2009, 104, 261-274
    • (2009) Biotechnol. Bioeng. , vol.104 , pp. 261-274
    • Zhou, W.1    Schuttler, H.B.2    Hao, Z.Q.3    Xu, Y.4
  • 13
    • 84869854102 scopus 로고    scopus 로고
    • How Does Plant Cell Wall Nanoscale Architecture Correlate with Enzymatic Digestibility?
    • Ding, S. Y.; Liu, Y. S.; Zeng, Y. N.; Himmel, M. E.; Baker, J. O.; Bayer, E. A. How Does Plant Cell Wall Nanoscale Architecture Correlate with Enzymatic Digestibility? Science 2012, 338, 1055-1060
    • (2012) Science , vol.338 , pp. 1055-1060
    • Ding, S.Y.1    Liu, Y.S.2    Zeng, Y.N.3    Himmel, M.E.4    Baker, J.O.5    Bayer, E.A.6
  • 17
    • 11844305068 scopus 로고    scopus 로고
    • New Views of Cells in 3d: An Introduction to Electron Tomography
    • McIntosh, R.; Nicastro, D.; Mastronarde, D. New Views of Cells in 3d: An Introduction to Electron Tomography Trends Cell Biol. 2005, 15, 43-51
    • (2005) Trends Cell Biol. , vol.15 , pp. 43-51
    • McIntosh, R.1    Nicastro, D.2    Mastronarde, D.3
  • 19
    • 33846953598 scopus 로고    scopus 로고
    • Dual-Axis Electron Tomography: A New Approach for Investigating the Spatial Organization of Wood Cellulose Microfibrils
    • Xu, P.; Donaldson, L. A.; Gergely, Z. R.; Staehelin, L. A. Dual-Axis Electron Tomography: A New Approach for Investigating the Spatial Organization of Wood Cellulose Microfibrils Wood Sci. Technol. 2007, 41, 101-116
    • (2007) Wood Sci. Technol. , vol.41 , pp. 101-116
    • Xu, P.1    Donaldson, L.A.2    Gergely, Z.R.3    Staehelin, L.A.4
  • 20
    • 56449097178 scopus 로고    scopus 로고
    • Visualizing Lignin Coalescence and Migration through Maize Cell Walls Following Thermochemical Pretreatment
    • Donohoe, B. S.; Decker, S. R.; Tucker, M. P.; Himmel, M. E.; Vinzant, T. B. Visualizing Lignin Coalescence and Migration through Maize Cell Walls Following Thermochemical Pretreatment Biotechnol. Bioeng. 2008, 101, 913-925
    • (2008) Biotechnol. Bioeng. , vol.101 , pp. 913-925
    • Donohoe, B.S.1    Decker, S.R.2    Tucker, M.P.3    Himmel, M.E.4    Vinzant, T.B.5
  • 22
    • 0037036704 scopus 로고    scopus 로고
    • Crystal Structure and Hydrogen-Bonding System in Cellulose 1 Beta from Synchrotron X-Ray and Neutron Fiber Diffraction
    • Nishiyama, Y.; Langan, P.; Chanzy, H. Crystal Structure and Hydrogen-Bonding System in Cellulose 1 Beta from Synchrotron X-Ray and Neutron Fiber Diffraction J. Am. Chem. Soc. 2002, 124, 9074-9082
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 9074-9082
    • Nishiyama, Y.1    Langan, P.2    Chanzy, H.3
  • 26
    • 23844533296 scopus 로고    scopus 로고
    • Optimization of the Ammonia Fiber Explosion (Afex) Treatment Parameters for Enzymatic Hydrolysis of Corn Stover
    • Teymouri, F.; Laureano-Perez, L.; Alizadeh, H.; Dale, B. E. Optimization of the Ammonia Fiber Explosion (Afex) Treatment Parameters for Enzymatic Hydrolysis of Corn Stover Bioresour. Technol. 2005, 96, 2014-2018
    • (2005) Bioresour. Technol. , vol.96 , pp. 2014-2018
    • Teymouri, F.1    Laureano-Perez, L.2    Alizadeh, H.3    Dale, B.E.4
  • 27
    • 34249024003 scopus 로고    scopus 로고
    • Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production
    • Himmel, M. E. Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production Science 2007, 316, 982-982
    • (2007) Science , vol.316 , pp. 982-982
    • Himmel, M.E.1
  • 30
    • 0015944212 scopus 로고
    • Structural Investigations on Lignin-Carbohydrate Complexes of Lolium-Perenne
    • Morrison, I. M. Structural Investigations on Lignin-Carbohydrate Complexes of Lolium-Perenne Biochem. J. 1974, 139, 197-204
    • (1974) Biochem. J. , vol.139 , pp. 197-204
    • Morrison, I.M.1
  • 31
    • 0029879295 scopus 로고    scopus 로고
    • Computer Visualization of Three-Dimensional Image Data Using Imod
    • Kremer, J. R.; Mastronarde, D. N.; McIntosh, J. R. Computer Visualization of Three-Dimensional Image Data Using Imod J. Struct. Biol. 1996, 116, 71-6
    • (1996) J. Struct. Biol. , vol.116 , pp. 71-76
    • Kremer, J.R.1    Mastronarde, D.N.2    McIntosh, J.R.3
  • 33
    • 38249036432 scopus 로고
    • Triple-Stranded, Left-Hand-Twisted Cellulose Microfibril
    • Ruben, G. C.; Bokelman, G. H. Triple-Stranded, Left-Hand-Twisted Cellulose Microfibril Carbohydr. Res. 1987, 160, 434-443
    • (1987) Carbohydr. Res. , vol.160 , pp. 434-443
    • Ruben, G.C.1    Bokelman, G.H.2
  • 38
    • 79953780010 scopus 로고    scopus 로고
    • Analysis of Twisting of Cellulose Nanofibrils in Atomistic Molecular Dynamics Simulations
    • Paavilainen, S.; Rog, T.; Vattulainen, I. Analysis of Twisting of Cellulose Nanofibrils in Atomistic Molecular Dynamics Simulations J. Phys. Chem. B 2011, 115, 3747-3755
    • (2011) J. Phys. Chem. B , vol.115 , pp. 3747-3755
    • Paavilainen, S.1    Rog, T.2    Vattulainen, I.3
  • 39
    • 84865435114 scopus 로고    scopus 로고
    • Cellulose Is Not Just Cellulose: A Review of Dislocations as Reactive Sites in the Enzymatic Hydrolysis of Cellulose Microfibrils
    • Hidayat, B. J.; Felby, C.; Johansen, K. S.; Thygesen, L. G. Cellulose Is Not Just Cellulose: A Review of Dislocations as Reactive Sites in the Enzymatic Hydrolysis of Cellulose Microfibrils Cellulose 2012, 19, 1481-1493
    • (2012) Cellulose , vol.19 , pp. 1481-1493
    • Hidayat, B.J.1    Felby, C.2    Johansen, K.S.3    Thygesen, L.G.4
  • 41
    • 84864056914 scopus 로고    scopus 로고
    • Degree of Polymerization of Glucan Chains Shapes the Structure Fluctuations and Melting Thermodynamics of a Cellulose Microfibril
    • Chang, R.; Gross, A. S.; Chu, J. W. Degree of Polymerization of Glucan Chains Shapes the Structure Fluctuations and Melting Thermodynamics of a Cellulose Microfibril J. Phys. Chem. B 2012, 116, 8074-8083
    • (2012) J. Phys. Chem. B , vol.116 , pp. 8074-8083
    • Chang, R.1    Gross, A.S.2    Chu, J.W.3
  • 42
    • 79952606527 scopus 로고    scopus 로고
    • A Coarse-Grained Model for Molecular Dynamics Simulations of Native Cellulose
    • Wohlert, J.; Berglund, L. A. A Coarse-Grained Model for Molecular Dynamics Simulations of Native Cellulose J. Chem. Theory Comput. 2011, 7, 753-760
    • (2011) J. Chem. Theory Comput. , vol.7 , pp. 753-760
    • Wohlert, J.1    Berglund, L.A.2
  • 44
    • 68149156908 scopus 로고    scopus 로고
    • The Energy Landscape for the Interaction of the Family 1 Carbohydrate-Binding Module and the Cellulose Surface Is Altered by Hydrolyzed Glycosidic Bonds
    • Bu, L.; Beckham, G. T.; Crowley, M. F.; Chang, C. H.; Matthews, J. F.; Bomble, Y. J.; Adney, W. S.; Himmel, M. E.; Nimlos, M. R. The Energy Landscape for the Interaction of the Family 1 Carbohydrate-Binding Module and the Cellulose Surface Is Altered by Hydrolyzed Glycosidic Bonds J. Phys. Chem. B 2009, 113, 10994-11002
    • (2009) J. Phys. Chem. B , vol.113 , pp. 10994-11002
    • Bu, L.1    Beckham, G.T.2    Crowley, M.F.3    Chang, C.H.4    Matthews, J.F.5    Bomble, Y.J.6    Adney, W.S.7    Himmel, M.E.8    Nimlos, M.R.9
  • 45
    • 25644458666 scopus 로고    scopus 로고
    • Automated Electron Microscope Tomography Using Robust Prediction of Specimen Movements
    • Mastronarde, D. N. Automated Electron Microscope Tomography Using Robust Prediction of Specimen Movements J. Struct. Biol. 2005, 152, 36-51
    • (2005) J. Struct. Biol. , vol.152 , pp. 36-51
    • Mastronarde, D.N.1
  • 46
    • 0031422417 scopus 로고    scopus 로고
    • Dual-Axis Tomography: An Approach with Alignment Methods That Preserve Resolution
    • Mastronarde, D. N. Dual-Axis Tomography: An Approach with Alignment Methods That Preserve Resolution J. Struct. Biol. 1997, 120, 343-352
    • (1997) J. Struct. Biol. , vol.120 , pp. 343-352
    • Mastronarde, D.N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.