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Volumn 99, Issue 12, 2013, Pages 1046-1069

Supercoiled pseudocircular domains in single-twisted DNAs under tension: Elastic constants and unwinding dynamics in complexes with topo i

(2) Schurr, J Michael a Fujimoto, Bryant S a

a UNIVERSITY OF WASHINGTON (United States)

Author keywords

DNA under tension; processivity of Topo I; rate of unwinding in complexes with Topo I; supercoiled pseudocircular domains; torsional rigidity

Indexed keywords

EFFECTIVE FRICTION COEFFICIENT; HUMAN TOPOISOMERASE; NONCOVALENT BINDING; STRUCTURAL TRANSITIONS; SUPERCOILED; TEMPORAL TRAJECTORIES; TOPO; TORSIONAL RIGIDITY;

BINDING ENERGY; CHAINS; DIFFERENTIAL EQUATIONS; RATE CONSTANTS; RIGIDITY; WINDING;

DNA;

CIRCULAR DNA; DNA; DNA TOPOISOMERASE; RIBONUCLEASE H; DNA SUPERCOILING;

ALLOSTERISM; ARTICLE; DISSOCIATION CONSTANT; DNA DENATURATION; DNA SUPERCOILING; HUMAN; IONIC STRENGTH; MECHANICAL TORSION; TENSION; TORQUE; ANIMAL; CHEMISTRY;

ANIMALS; DNA; DNA, SUPERHELICAL; HUMANS;

EID: 84884959944 PISSN: 00063525 EISSN: 10970282 Source Type: Journal
DOI: 10.1002/bip.22272 Document Type: Article

Times cited : (2)

References (69)

1
- 0030564829
- Heath, P. J.,;, Clendenning, J. B.,;, Fujimoto, B. S.,;, Schurr, J. M., J Mol Biol 1996, 260, 718-730.
- (1996) J Mol Biol , vol.260 , pp. 718-730
- Heath, P.J.¹ Clendenning, J.B.² Fujimoto, B.S.³ Schurr, J.M.⁴

2
- 0031432659
- Schurr, J. M.,;, Delrow, J. J.,;, Fujimoto, B. S.,;, Benight, A. S., Biopolymers 1997, 44, 283-308.
- (1997) Biopolymers , vol.44 , pp. 283-308
- Schurr, J.M.¹ Delrow, J.J.² Fujimoto, B.S.³ Benight, A.S.⁴

3
- 33845351506
- Fujimoto, B. S.,;, Brewood, G. P.,;, Schurr, J. M., Biophys J 2006, 91, 4166-4179.
- (2006) Biophys J , vol.91 , pp. 4166-4179
- Fujimoto, B.S.¹ Brewood, G.P.² Schurr, J.M.³

4
- 0000166387
- Topics in Fluorescence Spectroscopy
- Lakowicz, J. R. Ed.; Plenum Press: New York
- Schurr, J. M.,;, Fujimoto, B. S.,;, Wu, P.-G.,;, Song, L., Topics in Fluorescence Spectroscopy, vol. 3, Biochemical Applications;, Lakowicz, J. R., Ed.; Plenum Press: New York, 1992, pp 137-229.
- (1992) Biochemical Applications , vol.3 , pp. 137-229
- Schurr, J.M.¹ Fujimoto, B.S.² Wu, P.-G.³ Song, L.⁴

5
- 0025298856
- Song, L.,;, Fujimoto, B. S.,;, Wu, P.-G.,;, Thomas, J. C.,;, Shibata, J. H.,;, Schurr, J. M., J Mol Biol 1990, 214, 307-326.
- (1990) J Mol Biol , vol.214 , pp. 307-326
- Song, L.¹ Fujimoto, B.S.² Wu, P.-G.³ Thomas, J.C.⁴ Shibata, J.H.⁵ Schurr, J.M.⁶

6
- 0027133746
- Kim, U.-S.,;, Fujimoto, B. S.,;, Furlong, C. E.,;, Sundstrom, J. A.,;, Humbert, R.,;, Teller, D. C.,;, Schurr, J. M., Biopolymers 1993, 33, 1725-1745.
- (1993) Biopolymers , vol.33 , pp. 1725-1745
- Kim, U.-S.¹ Fujimoto, B.S.² Furlong, C.E.³ Sundstrom, J.A.⁴ Humbert, R.⁵ Teller, D.C.⁶ Schurr, J.M.⁷

7
- 0023743235
- Wu, P.-G.,;, Song, L.,;, Clendenning, J. R.,;, Fujimoto, B. S.,;, Benight, A. S.,;, Schurr, J. M., Biochemistry 1988, 27, 8128-8144.
- (1988) Biochemistry , vol.27 , pp. 8128-8144
- Wu, P.-G.¹ Song, L.² Clendenning, J.R.³ Fujimoto, B.S.⁴ Benight, A.S.⁵ Schurr, J.M.⁶

8
- 0025840598
- Wu, P.-G.,;, Fujimoto, B. S.,;, Song, L.,;, Clendenning, J. B.,;, Schurr, J. M., Biophys Chem 1991, 41, 217-236.
- (1991) Biophys Chem , vol.41 , pp. 217-236
- Wu, P.-G.¹ Fujimoto, B.S.² Song, L.³ Clendenning, J.B.⁴ Schurr, J.M.⁵

9
- 0022367194
- Langowski, L.,;, Benight, A. S.,;, Fujimoto, B. S.,;, Schurr, J. M.,;, Schomburg, U., Biochemistry 1985, 24, 4022-4028.
- (1985) Biochemistry , vol.24 , pp. 4022-4028
- Langowski, L.¹ Benight, A.S.² Fujimoto, B.S.³ Schurr, J.M.⁴ Schomburg, U.⁵

10
- 77951219204
- Brewood, G. P.,;, Delrow, J. J.,;, Schurr, J. M., Biochemistry 2010, 49, 3367-3380.
- (2010) Biochemistry , vol.49 , pp. 3367-3380
- Brewood, G.P.¹ Delrow, J.J.² Schurr, J.M.³

11
- 0034053141
- Naimushin, A. N.,;, Fujimoto, B. S., Schurr, J. M., Biophys J 2000, 78, 1498-1518.
- (2000) Biophys J , vol.78 , pp. 1498-1518
- Naimushin, A.N.¹ Fujimoto, B.S.² Schurr, J.M.³

12
- 0027985577
- Clendenning, J. R.,;, Naimushin, A. N.,;, Fujimoto, B. S.,;, Stewart, D. W.,;, Schurr, J. M., Biophys Chem 1994, 52, 191-218.
- (1994) Biophys Chem , vol.52 , pp. 191-218
- Clendenning, J.R.¹ Naimushin, A.N.² Fujimoto, B.S.³ Stewart, D.W.⁴ Schurr, J.M.⁵

13
- 0000744136
- Depew, R. E.,;, Wang, J. C., Proc Natl Acad Sci USA 1975, 72, 4275-4279.
- (1975) Proc Natl Acad Sci USA , vol.72 , pp. 4275-4279
- Depew, R.E.¹ Wang, J.C.²

14
- 0000543794
- Pulleyblank, D. E.,;, Shure, M.,;, Tang, D.,;, Vinograd, J,;, Vosberg, H. P., Proc Natl Acad Sci USA 1975, 72, 4280-4284.
- (1975) Proc Natl Acad Sci USA , vol.72 , pp. 4280-4284
- Pulleyblank, D.E.¹ Shure, M.² Tang, D.³ Vinograd, J.⁴ Vosberg, H.P.⁵

15
- 0021320555
- Horowitz, D.,;, Wang, J. C., J Mol Biol 1984, 173, 75-91.
- (1984) J Mol Biol , vol.173 , pp. 75-91
- Horowitz, D.¹ Wang, J.C.²

16
- 0021022977
- Shore, D.,;, Baldwin, R. L., J Mol Biol 1983, 170, 957-1007.
- (1983) J Mol Biol , vol.170 , pp. 957-1007
- Shore, D.¹ Baldwin, R.L.²

17
- 0016638632
- Hsieh, T. S.,;, Wang, J. C., Biochemistry 1975, 14, 527-535.
- (1975) Biochemistry , vol.14 , pp. 527-535
- Hsieh, T.S.¹ Wang, J.C.²

18
- 0014944441
- Bauer, W.,;, Vinograd, J. J Mol Biol 1970, 47, 419-435.
- (1970) J. J Mol Biol , vol.47 , pp. 419-435
- Bauer, W.¹ Vinograd, J.²

19
- 0019077298
- Thomas, J. C.,;, Allison, S. A.,;, Appellof, C. J.,;, Schurr, J. M., Biophys Chem 1980, 12, 177-188.
- (1980) Biophys Chem , vol.12 , pp. 177-188
- Thomas, J.C.¹ Allison, S.A.² Appellof, C.J.³ Schurr, J.M.⁴

20
- 0025366778
- Fujimoto, B. S.,;, Schurr, J. M., Nature 1990, 344, 175-178.
- (1990) Nature , vol.344 , pp. 175-178
- Fujimoto, B.S.¹ Schurr, J.M.²

21
- 0002851534
- Schurr, J. M., Chem Phys 1984, 84, 71-96.
- (1984) Chem Phys , vol.84 , pp. 71-96
- Schurr, J.M.¹

22
- 0025370846
- Song, L.,;, Allison, S. A.,;, Schurr, J. M., Biopolymers 1990, 29, 1773-1791.
- (1990) Biopolymers , vol.29 , pp. 1773-1791
- Song, L.¹ Allison, S.A.² Schurr, J.M.³

23
- 0025089220
- Song, L.,;, Schurr, J. M., Biopolymers 1990, 30, 229-237.
- (1990) Biopolymers , vol.30 , pp. 229-237
- Song, L.¹ Schurr, J.M.²

24
- 0034053141
- Naimushin, A. N.,;, Fujimoto, B. S.,;, Schurr, J. M., Biophys J 2000, 78, 1498-1518.
- (2000) Biophys J , vol.78 , pp. 1498-1518
- Naimushin, A.N.¹ Fujimoto, B.S.² Schurr, J.M.³

25
- 0030783292
- Delrow, J. J., Heath, P. J.,;, Schurr, J. M., Biophys J 1997, 73, 2688-2701.
- (1997) Biophys J , vol.73 , pp. 2688-2701
- Delrow, J.J.¹ Heath, P.J.² Schurr, J.M.³

26
- 55649114217
- Brewood, G. P.,;, Aliwarga, T.,;, Schurr, J. M., J Phys Chem B 2008, 112, 13367-13380.
- (2008) J Phys Chem B , vol.112 , pp. 13367-13380
- Brewood, G.P.¹ Aliwarga, T.² Schurr, J.M.³

27
- 84860376513
- Maegashi, T.,;, Hsiao, C.,;, Woods, K. W.,;, Moulaei, T,;, Hud, N. V.,;, Williams, L. D., Nucleic Acids Res 2012, 40, 3714-3722.
- (2012) Nucleic Acids Res , vol.40 , pp. 3714-3722
- Maegashi, T.¹ Hsiao, C.² Woods, K.W.³ Moulaei, T.⁴ Hud, N.V.⁵ Williams, L.D.⁶

28
- 0032787071
- Okonogi, T.,;, Reese, A.,;, Alley, S. C.,;, Hopkins, P. B.,;, Robinson, B. H., Biophys J 1999, 77, 3256-3276.
- (1999) Biophys J , vol.77 , pp. 3256-3276
- Okonogi, T.¹ Reese, A.² Alley, S.C.³ Hopkins, P.B.⁴ Robinson, B.H.⁵

29
- 0034106191
- Okonogi, T. M.,;, Alley, S. C.,;, Reese, A. W.,;, Hopkins, P. B.,;, Robinson, B. H., Biophys J 2000, 78, 2560-2571.
- (2000) Biophys J , vol.78 , pp. 2560-2571
- Okonogi, T.M.¹ Alley, S.C.² Reese, A.W.³ Hopkins, P.B.⁴ Robinson, B.H.⁵

30
- 33847275534
- Rangel, D. P.,;, Brewood, G.,;, Fujimoto, B. S.,;, Schurr, J. M., Biopolymers 2007, 85, 222-232.
- (2007) Biopolymers , vol.85 , pp. 222-232
- Rangel, D.P.¹ Brewood, G.² Fujimoto, B.S.³ Schurr, J.M.⁴

31
- 0000545475
- Shimada, J.,;, Yamakawa, H., Macromolecules 1984, 17, 689-698.
- (1984) Macromolecules , vol.17 , pp. 689-698
- Shimada, J.¹ Yamakawa, H.²

32
- 0021847771
- Shimada, J.,;, Yamakawa, H., J Mol Biol 1985, 184, 319-329.
- (1985) J Mol Biol , vol.184 , pp. 319-329
- Shimada, J.¹ Yamakawa, H.²

33
- 0021806558
- Frank-Kamenetskii, M. D.,;, Lukashin, A. V.,;, Anshelevich, V. V.,;, Vologodskii, A. V., J Biomol Struct Dyn 1985, 2, 1005-1012.
- (1985) J Biomol Struct Dyn , vol.2 , pp. 1005-1012
- Frank-Kamenetskii, M.D.¹ Lukashin, A.V.² Anshelevich, V.V.³ Vologodskii, A.V.⁴

34
- 0028166869
- Clendenning, J. B.,;, Schurr, J. M., Biopolymers 1994, 34, 849-868.
- (1994) Biopolymers , vol.34 , pp. 849-868
- Clendenning, J.B.¹ Schurr, J.M.²

35
- 7544250406
- Rangel, D. P.,;, Sucato, C. A.,;, Spink, C. H.,;, Fujimoto, B. S.,;, Schurr, J. M., Biopolymers 2004, 75, 291-313.
- (2004) Biopolymers , vol.75 , pp. 291-313
- Rangel, D.P.¹ Sucato, C.A.² Spink, C.H.³ Fujimoto, B.S.⁴ Schurr, J.M.⁵

36
- 0029937922
- Strick, T. R.,;, Allemand, J. F.,;, Bensimon, D.,;, Bensimon, A.,;, Croquette, V., Science 1996, 271, 1835-1837.
- (1996) Science , vol.271 , pp. 1835-1837
- Strick, T.R.¹ Allemand, J.F.² Bensimon, D.³ Bensimon, A.⁴ Croquette, V.⁵

37
- 0031895463
- Strick, T. R.,;, Allemand, J. F.,;, Bensimon, D.,;, Croquette, V., Biophys J 1998, 74, 2016-2028.
- (1998) Biophys J , vol.74 , pp. 2016-2028
- Strick, T.R.¹ Allemand, J.F.² Bensimon, D.³ Croquette, V.⁴

38
- 0034528817
- Strick, T.,;, Allemand, J.,;, Croquette, V.,;, Bensimon, D., Prog Biophys Mol Biol 2000, 74, 115-140.
- (2000) Prog Biophys Mol Biol , vol.74 , pp. 115-140
- Strick, T.¹ Allemand, J.² Croquette, V.³ Bensimon, D.⁴

39
- 0031474159
- Moroz, J. D.,;, Nelson, P., Proc Natl Acad Sci USA 1997, 94, 14418-14422.
- (1997) Proc Natl Acad Sci USA , vol.94 , pp. 14418-14422
- Moroz, J.D.¹ Nelson, P.²

40
- 0030973367
- Vologodskii, A. V.,;, Marko, J. F., Biophys J. 1997, 73, 123-132.
- (1997) Biophys J. , vol.73 , pp. 123-132
- Vologodskii, A.V.¹ Marko, J.F.²

41
- 11744306627
- Bouchiat, C.,;, Mezard, M., Phys Rev Lett 1998, 80, 1556-1559.
- (1998) Phys Rev Lett , vol.80 , pp. 1556-1559
- Bouchiat, C.¹ Mezard, M.²

42
- 0041305824
- Bryant, Z.,;, Stone, M. D.,;, Gore, J.,;, Smith, S. B.,;, Cozzarelli, N. R.,;, Bustamante, C., Nature 2003, 424, 338-341.
- (2003) Nature , vol.424 , pp. 338-341
- Bryant, Z.¹ Stone, M.D.² Gore, J.³ Smith, S.B.⁴ Cozzarelli, N.R.⁵ Bustamante, C.⁶

43
- 15844383117
- Koster, D. A.,;, Croquette, V.,;, Dekker, C.,;, Shuman, S.,;, Dekker, N., Nature 2005, 434, 671-674.
- (2005) Nature , vol.434 , pp. 671-674
- Koster, D.A.¹ Croquette, V.² Dekker, C.³ Shuman, S.⁴ Dekker, N.⁵

44
- 34547498794
- Crut, A.,;, Koster, D. A.,;, Seidel, R.,;, Wiggins, C. H.,;, Dekker, N., Proc Natl Acad Sci USA 2007, 104, 11957-11962.
- (2007) Proc Natl Acad Sci USA , vol.104 , pp. 11957-11962
- Crut, A.¹ Koster, D.A.² Seidel, R.³ Wiggins, C.H.⁴ Dekker, N.⁵

45
- 0003458038
- Springer: New York
- Saenger, W., Principles of Nucleic Acid Structure; Springer: New York, 1984.
- (1984) Principles of Nucleic Acid Structure
- Saenger, W.¹

46
- 0031047888
- Wang, M. D.,;, Yin, H.,;, Landick, R.,;, Gelles, J.,;, Block, J. M., Biophys J 1997, 72, 1335-1346.
- (1997) Biophys J , vol.72 , pp. 1335-1346
- Wang, M.D.¹ Yin, H.² Landick, R.³ Gelles, J.⁴ Block, J.M.⁵

47
- 0036293430
- Vologodskaia, M.,;, Vologodskii, A., J Mol Biol 2002, 317, 205-213.
- (2002) J Mol Biol , vol.317 , pp. 205-213
- Vologodskaia, M.¹ Vologodskii, A.²

48
- 0023746243
- Hagerman, P., J. Annu Rev Biophys Biophys Chem 1988, 17, 265-286.
- (1988) J. Annu Rev Biophys Biophys Chem , vol.17 , pp. 265-286
- Hagerman, P.¹

49
- 0020987183
- Maret, G.,;, Weill, G., Biopolymers 1983, 22, 2727-2744.
- (1983) Biopolymers , vol.22 , pp. 2727-2744
- Maret, G.¹ Weill, G.²

50
- 0000137163
- Schurr, J. M.,;, Schmitz, K. S., Annu Rev Phys Chem 1986, 37, 271-304.
- (1986) Annu Rev Phys Chem , vol.37 , pp. 271-304
- Schurr, J.M.¹ Schmitz, K.S.²

51
- 84867229716
- van Loenhout, M. T. J.,;, de Grunt, M. V.,;, Dekker, C., Science 2012, 338, 94-97.
- (2012) Science , vol.338 , pp. 94-97
- Van Loenhout, M.T.J.¹ De Grunt, M.V.² Dekker, C.³

52
- 0028869662
- Gebe, J. A.,;, Allison, S. A.,;, Clendenning, J. B.,;, Schurr, J. M., Biophys J 1995, 68, 619-633.
- (1995) Biophys J , vol.68 , pp. 619-633
- Gebe, J.A.¹ Allison, S.A.² Clendenning, J.B.³ Schurr, J.M.⁴

53
- 0032104683
- Delrow, J. J.,;, Heath, P. J.,;, Fujimoto, B. S.,;, Schurr, J. M., Biopolymers 1998, 45, 503-515.
- (1998) Biopolymers , vol.45 , pp. 503-515
- Delrow, J.J.¹ Heath, P.J.² Fujimoto, B.S.³ Schurr, J.M.⁴

54
- 55649120251
- Rangel, D. P.,;, Fujimoto, B. S.,;, Schurr, J. M., J Phys Chem B 2008, 112, 13359-13366.
- (2008) J Phys Chem B , vol.112 , pp. 13359-13366
- Rangel, D.P.¹ Fujimoto, B.S.² Schurr, J.M.³

55
- 0028308422
- Vologodskii, A. V.,;, Cozzarelli, N. R., Annu Rev Biophys Biomol Struct 1994, 23, 609-643.
- (1994) Annu Rev Biophys Biomol Struct , vol.23 , pp. 609-643
- Vologodskii, A.V.¹ Cozzarelli, N.R.²

56
- 0029776063
- Chirico, G.,;, Langowski, J. Biophys J 1996, 71, 955-971.
- (1996) J. Biophys J , vol.71 , pp. 955-971
- Chirico, G.¹ Langowski, J.²

57
- 0032579449
- Pfannschmidt, C.,;, Langowski, J., J. Mol Biol 1998, 275, 601-611.
- (1998) J. Mol Biol , vol.275 , pp. 601-611
- Pfannschmidt, C.¹ Langowski, J.²

58
- 0036392202
- Bussiek, M.,;, Klenin, K.,;, Langowski, J. J Mol Biol 2002, 322, 707-718.
- (2002) J. J Mol Biol , vol.322 , pp. 707-718
- Bussiek, M.¹ Klenin, K.² Langowski, J.³

59
- 0030595083
- Gebe, J. A.,;, Delrow, J. J.,;, Heath, P. J.,;, Fujimoto, B. S.,;, Stewart, D. W.,;, Schurr, J. M., J. Mol Biol 1996, 262, 105-128.
- (1996) J. Mol Biol , vol.262 , pp. 105-128
- Gebe, J.A.¹ Delrow, J.J.² Heath, P.J.³ Fujimoto, B.S.⁴ Stewart, D.W.⁵ Schurr, J.M.⁶

60
- 0014413820
- Gray, H. B.,;, Hearst, J. E., J Mol Biol 1968, 35, 111-129.
- (1968) J Mol Biol , vol.35 , pp. 111-129
- Gray, H.B.¹ Hearst, J.E.²

61
- 0020838451
- Wilcoxon, J.,;, Schurr, J. M., Biopolymers 1983, 22, 2273-2321.
- (1983) Biopolymers , vol.22 , pp. 2273-2321
- Wilcoxon, J.¹ Schurr, J.M.²

62
- 0021761497
- Shibata, J. H.,;, Wilcoxon, J.,;, Schurr, J. M.,;, Knauf, V., Biochemistry 1984, 23, 1188-1194.
- (1984) Biochemistry , vol.23 , pp. 1188-1194
- Shibata, J.H.¹ Wilcoxon, J.² Schurr, J.M.³ Knauf, V.⁴

63
- 2142763934
- and
- Sucato, C.,;, Rangel, D. P.,;, Aspleaf, D.,;, Fujimoto, B. S.,; and, Schurr, J. M., Biophys J 2004, 86, 3079-3096.
- (2004) Biophys J , vol.86 , pp. 3079-3096
- Sucato, C.¹ Rangel, D.P.² Aspleaf, D.³ Fujimoto, B.S.⁴ Schurr, J.M.⁵

64
- 0034923502
- Champoux, J., J. Annu Rev Biochem 2001, 70, 369-413.
- (2001) J. Annu Rev Biochem , vol.70 , pp. 369-413
- Champoux, J.¹

65
- 0017799064
- Lin, S.-C.,;, Schurr, J. M., Biopolymers 1978, 17, 425-461.
- (1978) Biopolymers , vol.17 , pp. 425-461
- Lin, S.-C.¹ Schurr, J.M.²

66
- 36149027699
- Wang, M. C.,;, Uhlenbeck, G. E., Rev Mod Phys 1945, 17, 323-342.
- (1945) Rev Mod Phys , vol.17 , pp. 323-342
- Wang, M.C.¹ Uhlenbeck, G.E.²

67
- 0002291771
- Allison, S. A.,;, Schurr, J. M., Chem Phys 1979, 41, 35-59.
- (1979) Chem Phys , vol.41 , pp. 35-59
- Allison, S.A.¹ Schurr, J.M.²

68
- 84886087925
- Stivers, J. T.,;, Harris, T. K.,;, Mildvan, A. S., Biochemistry 1997, 36, 5217-5222.
- (1997) Biochemistry , vol.36 , pp. 5217-5222
- Stivers, J.T.¹ Harris, T.K.² Mildvan, A.S.³

69
- 0028787255
- Madden, K. R.,;, Stewart, L.,;, Champoux, J., J. EMBO J 1995, 14, 5399-5409.
- (1995) J. EMBO J , vol.14 , pp. 5399-5409
- Madden, K.R.¹ Stewart, L.² Champoux, J.³

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