A structural transition in duplex DNA induced by ethylene glycol

Journal of Physical Chemistry B

Volumn 112, Issue 42, 2008, Pages 13367-13380

  Brewood, Greg P ^a   Aliwarga, Theresa ^a   Michael Schurr, J ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BENDING (DEFORMATION); DICHROISM; DNA; EQUILIBRIUM CONSTANTS; ETHYLENE; ETHYLENE GLYCOL; FLOW INTERACTIONS; GENES; GLYCOLS; INFERENCE ENGINES; NUCLEIC ACIDS; OPTICAL PROPERTIES; ORGANIC ACIDS; PILES; SODIUM CHLORIDE; TORSIONAL STRESS;

BASE PAIRS; CIRCULAR DICHROISMS; COOPERATIVITY; DATA YIELDS; DUPLEX DNAS; ENERGY PARAMETERS; GENERAL THEORIES; OSMOLYTE; PREFERENTIAL INTERACTIONS; STRUCTURAL TRANSITIONS; SUPERCOILING; WATER ACTIVITIES;

ELASTIC CONSTANTS;

EID: 55649114217     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp802139a     Document Type: Article

References (52)

1. Schurr, J. M.; Delrow, J. J.; Fujimoto, B. S.; Benight, A. S. Biopolymers 1997, 44, 283.
2. Shibata, J. H.; Wilcoxon, J.; Schurr, J. M.; V. Knauf, V. Biochemistry 1984, 23, 1188.
3. Langowski, J.; Benight, A. S.; Fujimoto, B. S.; Schurr, J. M.; Schomburg, U. Biochemistry 1985, 24, 4022.
4. Wu, P. G.; Song, L.; Clendenning, J. B.; Fujimoto, B. S.; Benight, A. S.; Schurr, J. M. Biochemistry 1988, 27, 8128.
5. Wu, P.; Schurr, J. M. Biopolymers 1989, 28, 1695.
6. Song, L.; Fujimoto, B. S.; Wu, J. M.; Thomas, J. C.; Shibata, J. H.; Schurr, J. M. J. Mol. Biol. 1990, 214, 307.
7. Wu, P. O.; Fujimoto, B. S.; Song, L.; Schurr, J. M. Biophys. Chem. 1991, 41, 217.
8. Schurr, J. M.; Fujimoto, B. S.; Wu, P.-G.; Song, L. In Topics in fluorescence spectroscopy. Volume 3, Biochemical applications; Lakowicz, J. R., Ed.; Plenum Press: New York, 1992; p 137.
9. Kim, U. S.; Fujimoto, B. S.; Furlong, C. E.; Sundstrom, J. A.; Humbert, R.; Teller, D. C.; Schurr, J. M. Biopolymers 1993, 33, 1725.
10. Clendenning, J. B.; Schurr, J. M. Biopolymers 1994, 34, 849.
11. Clendenning, J. B.; Naimushin, A. N.; Fujimoto, B. S.; Stewart, D. W.; Schurr, J. M. Biophys. Chem. 1994, 52, 191.
12. Naimushin, A. N.; Clendenning, J. B.; Kim, U.-S.; Song, L.; Fujimoto, B. S.; Stewart, D. W.; Schurr, J. M. Biophys. Chem. 1994, 52, 219.
13. Heath, P. J.; Clendenning, J. B.; Fujimoto, B. S.; Schurr, J. M. J. Mol. Biol. 1996, 260, 718.
14. Delrow, J. J.; Heath, P. J.; Schurr, J. M. Biophys. J. 1997, 73, 2688.
15. Delrow, J. J.; Heath, P. J.; Fujimoto, B. S.; Schurr, J. M. Biopolymers 1998, 45, 503.
16. Naimushin, A. N.; Fujimoto, B. S.; Schurr, J. M. Biophys. J. 2000, 78, 1498.
17. Rangel, D. P.; Sucato, C. A.; Spink, C. H.; Fujimoto, B. S.; Schurr, J. M. Biopolymers 2004, 75, 291.
18. Sun, D.; Sheardy, R. D.; Chaires, J. B. Biochemistry 1991, 30, 8722.
19. Riccelli, P. V.; Vallone, P. M.; Kashin, I.; Faldasz, B. D.; Lane, M. J.; Benight, A. S. Biochemistry 1999, 38, 11197.
20. Owczarzy, R.; Vallone, P. M.; Goldstein, R. F.; Benight, A. S. Biopolymers 1999, 52, 29.
21. Vallone, P. M.; Benight, A. S. Biochemistry 2000, 39, 7835.
22. Qu, X.; Ren, J.; Riccelli, P. V.; Benight, A. S.; Chaires, J. B. Biochemistry 2003, 42, 11960.
23. Mandell, K.; Vallone, P. M.; Owczarzy, R.; Riccelli, P. V.; Benight, A. S. Biopolymers 2005, 82, 199.
24. Fujimoto, B. S.; Brewood, G. P.; Schurr, J. M. Biophys. J. 2006, 91, 4166.
25. Rangel, D. P.; Brewood, G. P.; Fujimoto, B. S.; Schurr, J. M. Biopolymers 2007, 85, 222.
26. Chitra, R.; Smith, P. E. J. Phys. Chem. B 2001, 105, 11513.
27. Schurr, J. M.; Rangel, D. P.; Aragon, S. R. Biophys. J. 2005, 89, 2258.
28. White, J. H. Am. J. Math 1969, 91, 693.
29. Fuller, F. B. Proc. Natl. Acad. Sci. U.S.A. 1971, 68, 815.
30. Depew, R. E.; Wang, J. C. Proc. Natl. Acad. Sci. U.S.A. 1975, 72, 4275.
31. Pulleyblank, D. E.; Shure, M.; Tang, J.; Vinograd, J.; Vosherg, H. P. Proc. Natl. Acad. Sci. U.S.A. 1975, 72, 4280.
32. Horowitz, D.; Wang, J. C. J. Mol. Biol. 1984, 173, 75.
33. Shore, D.; Baldwin, R. L. J. Mol. Biol. 1983, 170, 983.
34. Clendenning, J. B.; Naimushin, A. N.; Fujimoto, B. S.; Stewart, D. W.; Schurr, J. M. Biophys. Chem. 1994, 52, 191.
35. Gebe, J. A.; Allison, S. A.; Clendenning, J. B.; Schurr, J. M. Biophys. J. 1995, 68, 619.
36. Sucato, C. A.; Rangel, D. P.; Aspleaf, D.; Fujimoto, B. S.; Schurr. J. M. Biophys. J. 2004, 86, 3079.
37. Rangel, D. P.; Fujimolo, B. S.; Schurr, J. M. Biophys. Chem., submitted for publication, 2007.
38. di Mauro, E.; Caserta, M.; Negri, R; Carnevalli, F. J. Biol. Chem. 1985, 260, 152.
39. Flick, E. Industrial Solvents Handbook; William Andrew Publishing/Noyes: Park Ridge, NJ, 1998.
40. Weast, R. C., Ed. CRC Handbook of Chemistry and Physics; CRC Press, Inc.: Boca Raton, FL, 1980.
41. Brewood, O. P. Ph.D. Thesis, University of Washington, 2006.
42. Stanley, C.; Ran, D. C. Biophys. J. 2006, 91, 912.
43. Spink, C. H.; Chaires. J. B. Biochemistry 1999, 38, 496.
44. Preisler, R. S.; Chen, H. H.; Colombo, M. F.; Choc, Y.; Short, B. J., Jr.; Rau, D. C. Biochemistry 1995, 34, 14400.
45. Tunis-Sehneider, M. J. B; Maestre, M. F. J. Mol. Biol. 1970, 52, 521.
46. Nelson, R. G.; Johnson, W. C., Jr. Biochem. Biophys. Res. Commun. 1970, 41, 211.
47. Hanlon, S.; Brudno, S.; Wu, T. T.; Wolf, B. Biochemistry 1975, 14, 1648.
48. Baasc, W. C.; Johnson, W. C., Jr. Nucleic Acids Res. 1979, 6, 797.
49. Tinoco, I., Jr.; Sauer, K.; Wang, J. C.; Puglisi, J. D. Physical Chemistry, Principles and Applications in the Lift Sciences; Prentice-Hall: Upper Saddle River, NJ, 2002; p 575.
50. Wolf, B.; Hanlon, S. Biochemistry 1975, 14, 1661.
51. Vologodskaia, M.; Vologodski, A. V. J. Mol. Biol. 2002, 317, 205.
52. Hill, T. L. An Introduction to Staistical Thermodynamics; Addison-Wesley Publishing Co., Inc.: Reading, MA. 1962.