-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner, M., et al.; The Gene Ontology Consortium (2000). Gene ontology: Tool for the unification of biology. Nat. Genet. 25: 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
2
-
-
0029024281
-
ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates
-
Bartel, B., and Fink, G.R. (1995). ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates. Science 268: 1745-1748.
-
(1995)
Science
, vol.268
, pp. 1745-1748
-
-
Bartel, B.1
Fink, G.R.2
-
3
-
-
38649120826
-
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
-
Casneuf, T., Van de Peer, Y., and Huber, W. (2007). In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation. BMC Bioinformatics 8: 461.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 461
-
-
Casneuf, T.1
Van de Peer, Y.2
Huber, W.3
-
4
-
-
80052338881
-
Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana
-
Chan, E.K.F., Rowe, H.C., Corwin, J.A., Joseph, B., and Kliebenstein, D.J. (2011). Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana. PLoS Biol. 9: e1001125.
-
(2011)
PLoS Biol.
, vol.9
-
-
Chan, E.K.F.1
Rowe, H.C.2
Corwin, J.A.3
Joseph, B.4
Kliebenstein, D.J.5
-
5
-
-
7744225947
-
Transcriptional networks: Reverse-engineering gene regulation on a global scale
-
Chua, G., Robinson, M.D., Morris, Q., and Hughes, T.R. (2004). Transcriptional networks: Reverse-engineering gene regulation on a global scale. Curr. Opin. Microbiol. 7: 638-646.
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 638-646
-
-
Chua, G.1
Robinson, M.D.2
Morris, Q.3
Hughes, T.R.4
-
6
-
-
84859911467
-
Lessons from eQTL mapping studies: Non-coding regions and their role behind natural phenotypic variation in plants
-
Cubillos, F.A., Coustham, V., and Loudet, O. (2012). Lessons from eQTL mapping studies: Non-coding regions and their role behind natural phenotypic variation in plants. Curr. Opin. Plant Biol. 15: 192-198.
-
(2012)
Curr. Opin. Plant Biol.
, vol.15
, pp. 192-198
-
-
Cubillos, F.A.1
Coustham, V.2
Loudet, O.3
-
7
-
-
0033101835
-
IAR3 encodes an auxin conjugate hydrolase from Arabidopsis
-
Davies, R.T., Goetz, D.H., Lasswell, J., Anderson, M.N., and Bartel, B. (1999). IAR3 encodes an auxin conjugate hydrolase from Arabidopsis. Plant Cell 11: 365-376.
-
(1999)
Plant Cell
, vol.11
, pp. 365-376
-
-
Davies, R.T.1
Goetz, D.H.2
Lasswell, J.3
Anderson, M.N.4
Bartel, B.5
-
8
-
-
77949532033
-
CORNET: A user-friendly tool for data mining and integration
-
De Bodt, S., Carvajal, D., Hollunder, J., Van den Cruyce, J., Movahedi, S., and Inzé, D. (2010). CORNET: A user-friendly tool for data mining and integration. Plant Physiol. 152: 1167-1179.
-
(2010)
Plant Physiol.
, vol.152
, pp. 1167-1179
-
-
De Bodt, S.1
Carvajal, D.2
Hollunder, J.3
Van den Cruyce, J.4
Movahedi, S.5
Inzé, D.6
-
9
-
-
2342435295
-
Mapping Gene Ontology to proteins based on protein-protein interaction data
-
Deng, M.H., Tu, Z.D., Sun, F.Z., and Chen, T. (2004). Mapping Gene Ontology to proteins based on protein-protein interaction data. Bioinformatics 20: 895-902.
-
(2004)
Bioinformatics
, vol.20
, pp. 895-902
-
-
Deng, M.H.1
Tu, Z.D.2
Sun, F.Z.3
Chen, T.4
-
10
-
-
56749102636
-
Regulatory activity revealed by dynamic correlations in gene expression noise
-
Dunlop, M.J., Cox, R.S., III., Levine, J.H., Murray, R.M., and Elowitz, M.B. (2008). Regulatory activity revealed by dynamic correlations in gene expression noise. Nat. Genet. 40: 1493-1498.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1493-1498
-
-
Dunlop, M.J.1
Cox III, R.S.2
Levine, J.H.3
Murray, R.M.4
Elowitz, M.B.5
-
11
-
-
0001145515
-
Regulation of expression of proteinase inhibitor genes by methyl jasmonate and jasmonic acid
-
Farmer, E.E., Johnson, R.R., and Ryan, C.A. (1992). Regulation of expression of proteinase inhibitor genes by methyl jasmonate and jasmonic acid. Plant Physiol. 98: 995-1002.
-
(1992)
Plant Physiol.
, vol.98
, pp. 995-1002
-
-
Farmer, E.E.1
Johnson, R.R.2
Ryan, C.A.3
-
12
-
-
65349143346
-
(+)-7-iso-Jasmonoyl-L-isoleucine is the endogenous bioactive jasmonate
-
Fonseca, S., Chini, A., Hamberg, M., Adie, B., Porzel, A., Kramell, R., Miersch, O., Wasternack, C., and Solano, R. (2009). (+)-7-iso-Jasmonoyl-L-isoleucine is the endogenous bioactive jasmonate. Nat. Chem. Biol. 5: 344-350.
-
(2009)
Nat. Chem. Biol
, vol.5
, pp. 344-350
-
-
Fonseca, S.1
Chini, A.2
Hamberg, M.3
Adie, B.4
Porzel, A.5
Kramell, R.6
Miersch, O.7
Wasternack, C.8
Solano, R.9
-
13
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R.C., et al. (2004). Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol. 5: R80.
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
-
14
-
-
70449529712
-
Reverse engineering and verification of gene networks: Principles, assumptions, and limitations of present methods and future perspectives
-
He, F., Balling, R., and Zeng, A.P. (2009). Reverse engineering and verification of gene networks: Principles, assumptions, and limitations of present methods and future perspectives. J. Biotechnol. 144: 190-203.
-
(2009)
J. Biotechnol.
, vol.144
, pp. 190-203
-
-
He, F.1
Balling, R.2
Zeng, A.P.3
-
15
-
-
84863669875
-
Systematic identification of functional plant modules through the integration of complementary data sources
-
Heyndrickx, K.S., and Vandepoele, K. (2012). Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol. 159: 884-901.
-
(2012)
Plant Physiol.
, vol.159
, pp. 884-901
-
-
Heyndrickx, K.S.1
Vandepoele, K.2
-
16
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
Hughes, T.R., et al. (2000). Functional discovery via a compendium of expression profiles. Cell 102: 109-126.
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.R.1
-
17
-
-
0035775725
-
A new approach to decoding life: Systems biology
-
Ideker, T., Galitski, T., and Hood, L. (2001). A new approach to decoding life: Systems biology. Annu. Rev. Genomics Hum. Genet. 2: 343-372.
-
(2001)
Annu. Rev. Genomics Hum. Genet.
, vol.2
, pp. 343-372
-
-
Ideker, T.1
Galitski, T.2
Hood, L.3
-
18
-
-
43149097164
-
Molecular cloning and characterization of wheat calreticulin (CRT) gene involved in drought-stressed responses
-
Jia, X.Y., Xu, C.Y., Jing, R.L., Li, R.Z., Mao, X.G., Wang, J.P., and Chang, X.P. (2008). Molecular cloning and characterization of wheat calreticulin (CRT) gene involved in drought-stressed responses. J. Exp. Bot. 59: 739-751.
-
(2008)
J. Exp. Bot.
, vol.59
, pp. 739-751
-
-
Jia, X.Y.1
Xu, C.Y.2
Jing, R.L.3
Li, R.Z.4
Mao, X.G.5
Wang, J.P.6
Chang, X.P.7
-
19
-
-
66449127752
-
Quantitative genomics: Analyzing intraspecific variation using global gene expression polymorphisms or eQTLs
-
Kliebenstein, D. (2009). Quantitative genomics: analyzing intraspecific variation using global gene expression polymorphisms or eQTLs. Annu. Rev. Plant Biol. 60: 93-114.
-
(2009)
Annu. Rev. Plant Biol.
, vol.60
, pp. 93-114
-
-
Kliebenstein, D.1
-
20
-
-
80053600823
-
Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditions
-
Kodaira, K.S., Qin, F., Tran, L.S.P., Maruyama, K., Kidokoro, S., Fujita, Y., Shinozaki, K., and Yamaguchi-Shinozaki, K. (2011). Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditions. Plant Physiol. 157: 742-756.
-
(2011)
Plant Physiol.
, vol.157
, pp. 742-756
-
-
Kodaira, K.S.1
Qin, F.2
Tran, L.S.P.3
Maruyama, K.4
Kidokoro, S.5
Fujita, Y.6
Shinozaki, K.7
Yamaguchi-Shinozaki, K.8
-
21
-
-
79959328799
-
Cytochrome P450 CYP94B3 mediates catabolism and inactivation of the plant hormone jasmonoyl-L-isoleucine
-
Koo, A.J.K., Cooke, T.F., and Howe, G.A. (2011). Cytochrome P450 CYP94B3 mediates catabolism and inactivation of the plant hormone jasmonoyl-L-isoleucine. Proc. Natl. Acad. Sci. USA 108: 9298-9303.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 9298-9303
-
-
Koo, A.J.K.1
Cooke, T.F.2
Howe, G.A.3
-
22
-
-
70349138933
-
A rapid wound signal activates the systemic synthesis of bioactive jasmonates in Arabidopsis
-
Koo, A.J.K., Gao, X.L., Jones, A.D., and Howe, G.A. (2009). A rapid wound signal activates the systemic synthesis of bioactive jasmonates in Arabidopsis. Plant J. 59: 974-986.
-
(2009)
Plant J.
, vol.59
, pp. 974-986
-
-
Koo, A.J.K.1
Gao, X.L.2
Jones, A.D.3
Howe, G.A.4
-
23
-
-
84862234802
-
The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools
-
DATABASE ISSUE
-
Lamesch, P., et al. (2012). The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools. Nucleic Acids Res. 40 (Database issue): D1202-D1210.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Lamesch, P.1
-
24
-
-
76349125292
-
Rational association of genes with traits using a genomescale gene network for Arabidopsis thaliana
-
Lee, I., Ambaru, B., Thakkar, P., Marcotte, E.M., and Rhee, S.Y. (2010). Rational association of genes with traits using a genomescale gene network for Arabidopsis thaliana. Nat. Biotechnol. 28: 149-156.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 149-156
-
-
Lee, I.1
Ambaru, B.2
Thakkar, P.3
Marcotte, E.M.4
Rhee, S.Y.5
-
25
-
-
35948931439
-
An Arabidopsis gene network based on the graphical Gaussian model
-
Ma, S.S., Gong, Q.Q., and Bohnert, H.J. (2007). An Arabidopsis gene network based on the graphical Gaussian model. Genome Res. 17: 1614-1625.
-
(2007)
Genome Res.
, vol.17
, pp. 1614-1625
-
-
Ma, S.S.1
Gong, Q.Q.2
Bohnert, H.J.3
-
26
-
-
44149121700
-
Extracting expression modules from perturbational gene expression compendia
-
Maere, S., Van Dijck, P., and Kuiper, M. (2008). Extracting expression modules from perturbational gene expression compendia. BMC Syst. Biol. 2: 33.
-
(2008)
BMC Syst. Biol.
, vol.2
, pp. 33
-
-
Maere, S.1
Van Dijck, P.2
Kuiper, M.3
-
27
-
-
77950547216
-
Probing the reproducibility of leaf growth and molecular phenotypes: A comparison of three Arabidopsis accessions cultivated in ten laboratories
-
Massonnet, C., et al. (2010). Probing the reproducibility of leaf growth and molecular phenotypes: A comparison of three Arabidopsis accessions cultivated in ten laboratories. Plant Physiol. 152: 2142-2157.
-
(2010)
Plant Physiol.
, vol.152
, pp. 2142-2157
-
-
Massonnet, C.1
-
28
-
-
66449134839
-
Disruption of adenosine-59-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites
-
Mugford, S.G., et al. (2009). Disruption of adenosine-59-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites. Plant Cell 21: 910-927.
-
(2009)
Plant Cell
, vol.21
, pp. 910-927
-
-
Mugford, S.G.1
-
29
-
-
84859641038
-
Using gene expression noise to understand gene regulation
-
Munsky, B., Neuert, G., and van Oudenaarden, A. (2012). Using gene expression noise to understand gene regulation. Science 336: 183-187.
-
(2012)
Science
, vol.336
, pp. 183-187
-
-
Munsky, B.1
Neuert, G.2
van Oudenaarden, A.3
-
30
-
-
84870911330
-
Deciphering and prediction of transcriptome dynamics under fluctuating field conditions
-
Nagano, A.J., Sato, Y., Mihara, M., Antonio, B.A., Motoyama, R., Itoh, H., Nagamura, Y., and Izawa, T. (2012). Deciphering and prediction of transcriptome dynamics under fluctuating field conditions. Cell 151: 1358-1369.
-
(2012)
Cell
, vol.151
, pp. 1358-1369
-
-
Nagano, A.J.1
Sato, Y.2
Mihara, M.3
Antonio, B.A.4
Motoyama, R.5
Itoh, H.6
Nagamura, Y.7
Izawa, T.8
-
31
-
-
70350731110
-
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions
-
Nayak, R.R., Kearns, M., Spielman, R.S., and Cheung, V.G. (2009). Coexpression network based on natural variation in human gene expression reveals gene interactions and functions. Genome Res. 19: 1953-1962.
-
(2009)
Genome Res.
, vol.19
, pp. 1953-1962
-
-
Nayak, R.R.1
Kearns, M.2
Spielman, R.S.3
Cheung, V.G.4
-
32
-
-
75949122780
-
AGRONOMICS1: A new resource for Arabidopsis transcriptome profiling
-
Rehrauer, H., et al. (2010). AGRONOMICS1: A new resource for Arabidopsis transcriptome profiling. Plant Physiol. 152: 487-499.
-
(2010)
Plant Physiol.
, vol.152
, pp. 487-499
-
-
Rehrauer, H.1
-
33
-
-
84860567710
-
Genome-wide patterns of Arabidopsis gene expression in nature
-
Richards, C.L., Rosas, U., Banta, J., Bhambhra, N., and Purugganan, M.D. (2012). Genome-wide patterns of Arabidopsis gene expression in nature. PLoS Genet. 8: e1002662.
-
(2012)
PLoS Genet.
, vol.8
-
-
Richards, C.L.1
Rosas, U.2
Banta, J.3
Bhambhra, N.4
Purugganan, M.D.5
-
34
-
-
79551647459
-
Effect of population heterogenization on the reproducibility of mouse behavior: A multi-laboratory study
-
Richter, S.H., et al. (2011). Effect of population heterogenization on the reproducibility of mouse behavior: A multi-laboratory study. PLoS ONE 6: e16461.
-
(2011)
PLoS ONE
, vol.6
-
-
Richter, S.H.1
-
35
-
-
49749144406
-
Standardizing experimental protocols
-
Schilling, M., Pfeifer, A.C., Bohl, S., and Klingmüller, U. (2008). Standardizing experimental protocols. Curr. Opin. Biotechnol. 19: 354-359.
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 354-359
-
-
Schilling, M.1
Pfeifer, A.C.2
Bohl, S.3
Klingmüller, U.4
-
36
-
-
84863205849
-
NIH Image to ImageJ: 25 years of image analysis
-
Schneider, C.A., Rasband, W.S., and Eliceiri, K.W. (2012). NIH Image to ImageJ: 25 years of image analysis. Nat. Methods 9: 671-675.
-
(2012)
Nat. Methods
, vol.9
, pp. 671-675
-
-
Schneider, C.A.1
Rasband, W.S.2
Eliceiri, K.W.3
-
37
-
-
79953322205
-
PiNGO: A Cytoscape plugin to find candidate genes in biological networks
-
Smoot, M., Ono, K., Ideker, T., and Maere, S. (2011). PiNGO: A Cytoscape plugin to find candidate genes in biological networks. Bioinformatics 27: 1030-1031.
-
(2011)
Bioinformatics
, vol.27
, pp. 1030-1031
-
-
Smoot, M.1
Ono, K.2
Ideker, T.3
Maere, S.4
-
38
-
-
84857437687
-
Cellular noise regulons underlie fluctuations in Saccharomyces cerevisiae
-
Stewart-Ornstein, J., Weissman, J.S., and El-Samad, H. (2012). Cellular noise regulons underlie fluctuations in Saccharomyces cerevisiae. Mol. Cell 45: 483-493.
-
(2012)
Mol. Cell
, vol.45
, pp. 483-493
-
-
Stewart-Ornstein, J.1
Weissman, J.S.2
El-Samad, H.3
-
39
-
-
76049101786
-
A tomato enzyme synthesizes (+)-7-iso-jasmonoyl-L-isoleucine in wounded leaves
-
Suza, W.P., Rowe, M.L., Hamberg, M., and Staswick, P.E. (2010). A tomato enzyme synthesizes (+)-7-iso-jasmonoyl-L-isoleucine in wounded leaves. Planta 231: 717-728.
-
(2010)
Planta
, vol.231
, pp. 717-728
-
-
Suza, W.P.1
Rowe, M.L.2
Hamberg, M.3
Staswick, P.E.4
-
40
-
-
84855268714
-
Natural variation in Arabidopsis: From molecular genetics to ecological genomics
-
Weigel, D. (2012). Natural variation in Arabidopsis: From molecular genetics to ecological genomics. Plant Physiol. 158: 2-22.
-
(2012)
Plant Physiol.
, vol.158
, pp. 2-22
-
-
Weigel, D.1
-
41
-
-
84870055100
-
Jasmonoyl-L-isoleucine hydrolase 1 (JIH1) regulates jasmonoyl-L-isoleucine levels and attenuates plant defenses against herbivores
-
Woldemariam, M.G., Onkokesung, N., Baldwin, I.T., and Galis, I. (2012). Jasmonoyl-L-isoleucine hydrolase 1 (JIH1) regulates jasmonoyl-L-isoleucine levels and attenuates plant defenses against herbivores. Plant J. 72: 758-767.
-
(2012)
Plant J.
, vol.72
, pp. 758-767
-
-
Woldemariam, M.G.1
Onkokesung, N.2
Baldwin, I.T.3
Galis, I.4
-
42
-
-
39149095565
-
Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signalling
-
Yoo, S.D., Cho, Y.H., Tena, G., Xiong, Y., and Sheen, J. (2008). Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signalling. Nature 451: 789-795.
-
(2008)
Nature
, vol.451
, pp. 789-795
-
-
Yoo, S.D.1
Cho, Y.H.2
Tena, G.3
Xiong, Y.4
Sheen, J.5
-
43
-
-
73849141151
-
Arabidopsis thaliana class-II TGA transcription factors are essential activators of jasmonic acid/ethylene-induced defense responses
-
Zander, M., La Camera, S., Lamotte, O., Métraux, J.P., and Gatz, C. (2010). Arabidopsis thaliana class-II TGA transcription factors are essential activators of jasmonic acid/ethylene-induced defense responses. Plant J. 61: 200-210.
-
(2010)
Plant J.
, vol.61
, pp. 200-210
-
-
Zander, M.1
La Camera, S.2
Lamotte, O.3
Métraux, J.P.4
Gatz, C.5
-
44
-
-
79961036664
-
Derepression of ethylene-stabilized transcription factors (EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis
-
Zhu, Z.Q., et al. (2011). Derepression of ethylene-stabilized transcription factors (EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis. Proc. Natl. Acad. Sci. USA 108: 12539-12544.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 12539-12544
-
-
Zhu, Z.Q.1
|