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Volumn 27, Issue 8, 2013, Pages 655-664

Automated molecule editing in molecular design

Author keywords

Ionization; Matched molecular pair; Molecule editor; SMIRKS; Structure standardization; Tautomer

Indexed keywords

AUTOMATION; IONIZATION; MOLECULES;

EID: 84884676014     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-013-9676-0     Document Type: Review
Times cited : (10)

References (66)
  • 1
    • 85016377807 scopus 로고    scopus 로고
    • Structure modification in chemical databases. Methods and principles in medicinal chemistry
    • Oprea T (ed)
    • Kenny PW, Sadowski J (2005) Structure modification in chemical databases. Methods and principles in medicinal chemistry. In: Oprea T (ed) Chemoinformatics in drug discovery. 23:271-285
    • (2005) Chemoinformatics in Drug Discovery , vol.23 , pp. 271-285
    • Kenny, P.W.1    Sadowski, J.2
  • 2
    • 84884669271 scopus 로고    scopus 로고
    • Representing chemical structures in databases for drug design
    • drug design strategies
    • Barnard JM, Kenny PW, Wallace PN (2012) Representing chemical structures in databases for drug design. RSC drug discovery series 13 (drug design strategies) 164-191
    • (2012) RSC Drug Discovery Series , vol.13 , pp. 164-191
    • Barnard, J.M.1    Kenny, P.W.2    Wallace, P.N.3
  • 3
    • 35448939250 scopus 로고    scopus 로고
    • Complementarity between public and commercial databases: New opportunities in medicinal chemistry informatics
    • 10.2174/156802607782194761 1:CAS:528:DC%2BD2sXhsVOrur3M
    • Southan C, Várkonyi P, Muresan S (2007) Complementarity between public and commercial databases: new opportunities in medicinal chemistry informatics. Curr Top Med Chem 7:1502-1508
    • (2007) Curr Top Med Chem , vol.7 , pp. 1502-1508
    • Southan, C.1    Várkonyi, P.2    Muresan, S.3
  • 4
    • 1842450527 scopus 로고    scopus 로고
    • Identification of compounds with nanomolar binding affinity for checkpoint kinase-1 using knowledge-based virtual screening
    • 10.1021/jm030504i 1:CAS:528:DC%2BD2cXitValsLs%3D
    • Lyne PD, Kenny PW, Cosgrove DA, Deng C, Zabludoff S, Wendoloski JJ, Ashwell S (2004) Identification of compounds with nanomolar binding affinity for checkpoint kinase-1 using knowledge-based virtual screening. J Med Chem 47:1962-1968
    • (2004) J Med Chem , vol.47 , pp. 1962-1968
    • Lyne, P.D.1    Kenny, P.W.2    Cosgrove, D.A.3    Deng, C.4    Zabludoff, S.5    Wendoloski, J.J.6    Ashwell, S.7
  • 5
    • 28544434157 scopus 로고    scopus 로고
    • Statistical tools for virtual screening
    • 10.1021/jm0501026 1:CAS:528:DC%2BD2MXhtFCltbzM
    • Krumrine JR, Maynard AT, Lerman CL (2005) Statistical tools for virtual screening. J Med Chem 48:7477-7481
    • (2005) J Med Chem , vol.48 , pp. 7477-7481
    • Krumrine, J.R.1    Maynard, A.T.2    Lerman, C.L.3
  • 6
    • 13844312649 scopus 로고    scopus 로고
    • ZINC-A free database of commercially available compounds for virtual screening
    • 10.1021/ci049714+ 1:CAS:528:DC%2BD2cXhtVOjt77J
    • Irwin JJ, Shoichet BK (2005) ZINC-a free database of commercially available compounds for virtual screening. J Chem Inf Sci 45:177-182
    • (2005) J Chem Inf Sci , vol.45 , pp. 177-182
    • Irwin, J.J.1    Shoichet, B.K.2
  • 7
    • 0002606755 scopus 로고    scopus 로고
    • Virtual screening-an overview
    • 10.1016/S1359-6446(97)01163-X 1:CAS:528:DyaK1cXisVWjur8%3D
    • Walters WP, Stahl MT, Murcko MA (1998) Virtual screening-an overview. Drug Discov Today 3:160-178
    • (1998) Drug Discov Today , vol.3 , pp. 160-178
    • Walters, W.P.1    Stahl, M.T.2    Murcko, M.A.3
  • 8
    • 84884670055 scopus 로고    scopus 로고
    • Daylight Chemical Information Systems, Inc., Laguna Niguel, CA 92677 Accessed 16 Dec 2012
    • SMIRKS Theory Manual, Daylight Chemical Information Systems, Inc., Laguna Niguel, CA 92677. http://www.daylight.com/dayhtml/doc/theory/theory.smirks. html. Accessed 16 Dec 2012
    • SMIRKS Theory Manual
  • 9
    • 84884672713 scopus 로고    scopus 로고
    • Daylight toolkit, Daylight Chemical Information Systems, Inc., Laguna Niguel, CA 92677 Accessed 16 Dec 2012
    • Daylight toolkit, Daylight Chemical Information Systems, Inc., Laguna Niguel, CA 92677. http://www.daylight.com/products/toolkit.html. Accessed 16 Dec 2012
  • 10
    • 79953185645 scopus 로고    scopus 로고
    • Daylight Chemical Information Systems, Inc., Laguna Niguel, CA 92677 Accessed 20 May 2013
    • SMARTS Theory Manual, Daylight Chemical Information Systems, Inc., Laguna Niguel, CA 92677. http://www.daylight.com/dayhtml/doc/theory/theory.smarts. html. Accessed 20 May 2013
    • SMARTS Theory Manual
  • 11
    • 0012257335 scopus 로고
    • CAVEAT: A program to facilitate the structure-derived design of biologically active molecules. Special publication-Royal Society of Chemistry
    • Bartlett PA, Shea GT, Telfer SJ, Waterman S (1989) CAVEAT: a program to facilitate the structure-derived design of biologically active molecules. Special publication-Royal Society of Chemistry. Mol Recognit Chem Biochem. Probl 78, 182-196
    • (1989) Mol Recognit Chem Biochem. Probl , vol.78 , pp. 182-196
    • Bartlett, P.A.1    Shea, G.T.2    Telfer, S.J.3    Waterman, S.4
  • 12
    • 0033523672 scopus 로고    scopus 로고
    • Scaffold-Hopping" by topological pharmacophore search: A contribution to virtual screening
    • 10.1002/(SICI)1521-3773(19991004)38:19<2894: AID-ANIE2894>3.0.CO;2- F 1:CAS:528:DyaK1MXmslKht78%3D
    • Schneider G, Neidhart W, Giller T, Schmid G (1999) "Scaffold- Hopping" by topological pharmacophore search: a contribution to virtual screening. Angew Chem Int Ed 38:2894-2896
    • (1999) Angew Chem Int Ed , vol.38 , pp. 2894-2896
    • Schneider, G.1    Neidhart, W.2    Giller, T.3    Schmid, G.4
  • 13
    • 84884669861 scopus 로고    scopus 로고
    • Unity. Tripos International, St. Louis, MO 63144-2319 Accessed 25 May 2013
    • Unity. Tripos International, St. Louis, MO 63144-2319. http://www.tripos.com/index.php?family=modules,SimplePage,&page=UNITY. Accessed 25 May 2013
  • 14
    • 0024725804 scopus 로고
    • ALADDIN: An integrated tool for computer-assisted molecular design and pharmacophore recognition from geometric, steric, and substructure searching of three-dimensional molecular structures
    • 10.1007/BF01533070
    • Van Drie JH, Weininger D, Martin YC (1989) ALADDIN: an integrated tool for computer-assisted molecular design and pharmacophore recognition from geometric, steric, and substructure searching of three-dimensional molecular structures. J Comput Aided Mol Des 3:225-251
    • (1989) J Comput Aided Mol des , vol.3 , pp. 225-251
    • Van Drie, J.H.1    Weininger, D.2    Martin, Y.C.3
  • 15
    • 0023965741 scopus 로고
    • SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules
    • 10.1021/ci00057a005 1:CAS:528:DyaL1cXnsVeqsA%3D%3D
    • Weininger D (1988) SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules. J Chem Inf Comp Sci 28:31-36
    • (1988) J Chem Inf Comp Sci , vol.28 , pp. 31-36
    • Weininger, D.1
  • 16
    • 0024664539 scopus 로고
    • SMILES. 2. Algorithm for generation of unique SMILES notation
    • 10.1021/ci00062a008 1:CAS:528:DyaL1MXitFWlt7s%3D
    • Weininger D, Weininger A, Weininger JL (1989) SMILES. 2. Algorithm for generation of unique SMILES notation. J Chem Inf Comp Sci 29:97-101
    • (1989) J Chem Inf Comp Sci , vol.29 , pp. 97-101
    • Weininger, D.1    Weininger, A.2    Weininger, J.L.3
  • 17
    • 84884674310 scopus 로고    scopus 로고
    • OpenEye Scientific Software, Santa Fe, NM 87508 Accessed 26 Oct 2012
    • OEChem Toolkit Manual, OpenEye Scientific Software, Santa Fe, NM 87508. http://www.eyesopen.com/docs/toolkits/current/html/OEChem-TK-c++/index.html. Accessed 26 Oct 2012
    • OEChem Toolkit Manual
  • 20
    • 37049094430 scopus 로고
    • Tautomeric ratio in 4-methylthiazol-2-ylguanidine, a model guanidinoheterocycle
    • Button RG, Cairns JP, Taylor PJ (1985) Tautomeric ratio in 4-methylthiazol-2-ylguanidine, a model guanidinoheterocycle. J Chem Soc Perkin Trans 2:1555-1558
    • (1985) J Chem Soc Perkin Trans , vol.2 , pp. 1555-1558
    • Button, R.G.1    Cairns, J.P.2    Taylor, P.J.3
  • 21
    • 37049068708 scopus 로고
    • The tautomerism of 1,2,3-triazole in aqueous solution
    • Albert A, Taylor PJ (1989) The tautomerism of 1,2,3-triazole in aqueous solution. J Chem Soc Perkin Trans 2:1903-1905
    • (1989) J Chem Soc Perkin Trans , vol.2 , pp. 1903-1905
    • Albert, A.1    Taylor, P.J.2
  • 22
    • 76249106208 scopus 로고    scopus 로고
    • Let's not forget tautomers
    • 10.1007/s10822-009-9303-2 1:CAS:528:DC%2BD1MXhtl2ktbjM
    • Martin YC (2009) Let's not forget tautomers. J Comput Aid Mol Des 23:693-704
    • (2009) J Comput Aid Mol des , vol.23 , pp. 693-704
    • Martin, Y.C.1
  • 23
    • 77955714084 scopus 로고    scopus 로고
    • So you think you understand tautomerism?
    • 10.1007/s10822-010-9329-5 1:CAS:528:DC%2BC3cXnsFGqtbg%3D
    • Sayle RA (2010) So you think you understand tautomerism? J Comput Aid Mol Des 24:485-496
    • (2010) J Comput Aid Mol des , vol.24 , pp. 485-496
    • Sayle, R.A.1
  • 24
    • 33845779764 scopus 로고    scopus 로고
    • The impact of tautomer forms on pharmacophore-based virtual screening
    • 10.1021/ci060109b 1:CAS:528:DC%2BD28Xpt1Wgu7Y%3D
    • Oellien F, Cramer J, Beyer C, Ihlenfeldt W-D, Selzer PM (2006) The impact of tautomer forms on pharmacophore-based virtual screening. J Chem Inf Model 46:2342-2354
    • (2006) J Chem Inf Model , vol.46 , pp. 2342-2354
    • Oellien, F.1    Cramer, J.2    Beyer, C.3    Ihlenfeldt, W.-D.4    Selzer, P.M.5
  • 25
    • 14644408262 scopus 로고    scopus 로고
    • The tautomerism of 1H-pyrazole-3(5)-(N-tert-butyl)carboxamide in the solid state and in solution
    • 10.1002/mrc.1481 1:CAS:528:DC%2BD2MXjtVWisQ%3D%3D
    • Claramunt RM, Garcia MA, Lopez C, Trofimenko S, Yap GPA, Alkorta I, Elguero J (2005) The tautomerism of 1H-pyrazole-3(5)-(N-tert-butyl)carboxamide in the solid state and in solution. Magn Reson Chem 43:89-91
    • (2005) Magn Reson Chem , vol.43 , pp. 89-91
    • Claramunt, R.M.1    Garcia, M.A.2    Lopez, C.3    Trofimenko, S.4    Yap, G.P.A.5    Alkorta, I.6    Elguero, J.7
  • 26
    • 70350400728 scopus 로고    scopus 로고
    • a values of some piperazines at (298, 303, 313, and 323) K
    • 10.1021/je900005c 1:CAS:528:DC%2BD1MXosFCltrw%3D
    • a values of some piperazines at (298, 303, 313, and 323) K. J Chem Eng Data 54:2914-2917
    • (2009) J Chem Eng Data , vol.54 , pp. 2914-2917
    • Khalili, F.1    Henni, A.2    East, A.L.L.3
  • 27
    • 0002801544 scopus 로고
    • Effect of structure upon the reactions of organic compounds Benzene derivatives
    • 10.1021/ja01280a022 1:CAS:528:DyaA2sXjtlSqsw%3D%3D
    • Hammett LP (1937) Effect of structure upon the reactions of organic compounds Benzene derivatives. J Am Chem Soc 59:96-103
    • (1937) J Am Chem Soc , vol.59 , pp. 96-103
    • Hammett, L.P.1
  • 28
    • 33947485697 scopus 로고
    • A mathematical contribution to structure-activity studies
    • 10.1021/jm00334a001 1:CAS:528:DyaF2cXkt1OltbY%3D
    • Free SM, Wilson JW (1964) A mathematical contribution to structure-activity studies. J Med Chem 7:395-399
    • (1964) J Med Chem , vol.7 , pp. 395-399
    • Free, S.M.1    Wilson, J.W.2
  • 29
    • 58849114053 scopus 로고    scopus 로고
    • Matched molecular pair analysis of activity and properties of glycogen phosphorylase inhibitors
    • 10.1016/j.bmcl.2008.12.003 1:CAS:528:DC%2BD1MXhtF2itrc%3D
    • Birch AM, Kenny PW, Simpson I, Whittamore PRO (2009) Matched molecular pair analysis of activity and properties of glycogen phosphorylase inhibitors. Bioorg Med Chem Lett 19:850-853
    • (2009) Bioorg Med Chem Lett , vol.19 , pp. 850-853
    • Birch, A.M.1    Kenny, P.W.2    Simpson, I.3    Whittamore, P.R.O.4
  • 30
    • 36849122972 scopus 로고
    • High-temperature equation of state by a perturbation method I. Nonpolar gases
    • 10.1063/1.1740193 1:CAS:528:DyaG2cXnsFCgsw%3D%3D
    • Zwanzig RW (1954) High-temperature equation of state by a perturbation method I. Nonpolar gases. J Chem Phys 22:1420-1426
    • (1954) J Chem Phys , vol.22 , pp. 1420-1426
    • Zwanzig, R.W.1
  • 31
    • 34548703110 scopus 로고    scopus 로고
    • Alchemical free energy calculations: Ready for prime time?
    • 10.1016/S1574-1400(07)03004-6 1:CAS:528:DC%2BD1cXkt1Wnsr8%3D
    • Shirts MR, Mobley DL, Chodera JD (2007) Alchemical free energy calculations: ready for prime time? Ann Rep Comp Chem 3:41-59
    • (2007) Ann Rep Comp Chem , vol.3 , pp. 41-59
    • Shirts, M.R.1    Mobley, D.L.2    Chodera, J.D.3
  • 32
    • 33746931581 scopus 로고    scopus 로고
    • On outliers and activity cliffs-why QSAR often disappoints
    • 10.1021/ci060117s 1:CAS:528:DC%2BD28XntFeltbk%3D
    • Maggiora GM (2006) On outliers and activity cliffs-why QSAR often disappoints. J Chem Inf Model 46:1535
    • (2006) J Chem Inf Model , vol.46 , pp. 1535
    • Maggiora, G.M.1
  • 33
    • 78649844432 scopus 로고    scopus 로고
    • Activity landscape representations for structure - Activity relationship analysis
    • 10.1021/jm100933w 1:CAS:528:DC%2BC3cXhtFKmt7bF
    • Wassermann AM, Wawer M, Bajorath J (2010) Activity landscape representations for structure - activity relationship analysis. J Med Chem 53:8209-8223
    • (2010) J Med Chem , vol.53 , pp. 8209-8223
    • Wassermann, A.M.1    Wawer, M.2    Bajorath, J.3
  • 34
    • 84859179256 scopus 로고    scopus 로고
    • Exploring activity cliffs in medicinal chemistry
    • 10.1021/jm201706b 1:CAS:528:DC%2BC38XmtFajsQ%3D%3D
    • Stumpfe D, Bajorath J (2012) Exploring activity cliffs in medicinal chemistry. J Med Chem 55:2932-2942
    • (2012) J Med Chem , vol.55 , pp. 2932-2942
    • Stumpfe, D.1    Bajorath, J.2
  • 35
    • 0029783934 scopus 로고    scopus 로고
    • Neighborhood behavior: A useful concept for validation of "molecular diversity" descriptors
    • 10.1021/jm960290n 1:CAS:528:DyaK28Xkt1alur8%3D
    • Patterson DE, Cramer RD, Ferguson AM, Clark RD, Weinberger LE (1996) Neighborhood behavior: a useful concept for validation of "molecular diversity" descriptors. J Med Chem 39:3049-3059
    • (1996) J Med Chem , vol.39 , pp. 3049-3059
    • Patterson, D.E.1    Cramer, R.D.2    Ferguson, A.M.3    Clark, R.D.4    Weinberger, L.E.5
  • 36
    • 67650924493 scopus 로고    scopus 로고
    • Design of compound libraries for fragment screening
    • 10.1007/s10822-009-9264-5 1:CAS:528:DC%2BD1MXot1Gmur8%3D
    • Blomberg N, Cosgrove DA, Kenny PW, Kolmodin K (2009) Design of compound libraries for fragment screening. J Comput Aid Mol Des 23:513-525
    • (2009) J Comput Aid Mol des , vol.23 , pp. 513-525
    • Blomberg, N.1    Cosgrove, D.A.2    Kenny, P.W.3    Kolmodin, K.4
  • 37
    • 33750976700 scopus 로고    scopus 로고
    • Matched molecular pairs as a guide in the optimization of pharmaceutical properties; A study of aqueous solubility, plasma protein binding and oral exposure
    • 10.1021/jm0605233 1:CAS:528:DC%2BD28XhtV2gtLnO
    • Leach AG, Jones HD, Cosgrove DA, Kenny PW, Ruston L, MacFaul P, Wood JM, Colclough N, Law B (2006) Matched molecular pairs as a guide in the optimization of pharmaceutical properties; a study of aqueous solubility, plasma protein binding and oral exposure. J Med Chem 49:6672-6682
    • (2006) J Med Chem , vol.49 , pp. 6672-6682
    • Leach, A.G.1    Jones, H.D.2    Cosgrove, D.A.3    Kenny, P.W.4    Ruston, L.5    MacFaul, P.6    Wood, J.M.7    Colclough, N.8    Law, B.9
  • 38
    • 81555204763 scopus 로고    scopus 로고
    • Matched molecular pairs as a medicinal chemistry tool
    • 10.1021/jm200452d 1:CAS:528:DC%2BC3MXht1Wks7jK
    • Griffen E, Leach AG, Robb GR, Warner DJ (2011) Matched molecular pairs as a medicinal chemistry tool. J Med Chem 54:7739-7750
    • (2011) J Med Chem , vol.54 , pp. 7739-7750
    • Griffen, E.1    Leach, A.G.2    Robb, G.R.3    Warner, D.J.4
  • 39
    • 84870945499 scopus 로고    scopus 로고
    • Advances in computational medicinal chemistry: Matched molecular pair analysis
    • 10.1002/ddr.21045 1:CAS:528:DC%2BC38XhsFalsbrK
    • Wassermann AM, Dimova D, Iyer P, Bajorath J (2012) Advances in computational medicinal chemistry: matched molecular pair analysis. Drug Dev Res 73:518-527
    • (2012) Drug Dev Res , vol.73 , pp. 518-527
    • Wassermann, A.M.1    Dimova, D.2    Iyer, P.3    Bajorath, J.4
  • 41
    • 0036836947 scopus 로고    scopus 로고
    • 5-Substituted 1H-tetrazoles as carboxylic acid isosteres: Medicinal chemistry and synthetic methods
    • 10.1016/S0968-0896(02)00239-0 1:CAS:528:DC%2BD38Xms12jurY%3D
    • Herr RJ (2002) 5-Substituted 1H-tetrazoles as carboxylic acid isosteres: medicinal chemistry and synthetic methods. Bioorg Med Chem 10:3379-3393
    • (2002) Bioorg Med Chem , vol.10 , pp. 3379-3393
    • Herr, R.J.1
  • 43
    • 0006908514 scopus 로고
    • Isosterism and molecular modification in drug design
    • 10.1039/cs9790800563 1:CAS:528:DyaL3cXktlKmsL0%3D
    • Thornber CW (1979) Isosterism and molecular modification in drug design. Chem Soc Rev 8:563-580
    • (1979) Chem Soc Rev , vol.8 , pp. 563-580
    • Thornber, C.W.1
  • 44
    • 7744243992 scopus 로고    scopus 로고
    • Bioisosterism: A rational approach in drug design
    • 10.1021/cr950066q 1:CAS:528:DyaK28XntFSitLg%3D
    • Patani GA, LaVoie EJ (1996) Bioisosterism: a rational approach in drug design. Chem Rev 96:3147-3176
    • (1996) Chem Rev , vol.96 , pp. 3147-3176
    • Patani, G.A.1    Lavoie, E.J.2
  • 45
    • 0036025428 scopus 로고    scopus 로고
    • The most common chemical replacements in drug-like compounds
    • 10.1021/ci0100806 1:CAS:528:DC%2BD38XlvFWg
    • Sheridan RP (2002) The most common chemical replacements in drug-like compounds. J Chem Inf Comp Sci 42:103-108
    • (2002) J Chem Inf Comp Sci , vol.42 , pp. 103-108
    • Sheridan, R.P.1
  • 46
    • 79955419410 scopus 로고    scopus 로고
    • Synopsis of some recent tactical application of bioisosteres in drug design
    • 10.1021/jm1013693 1:CAS:528:DC%2BC3MXjsVCnu7o%3D
    • Meanwell Nicholas A (2011) Synopsis of some recent tactical application of bioisosteres in drug design. J Med Chem 54:2529-2591
    • (2011) J Med Chem , vol.54 , pp. 2529-2591
    • Meanwell, N.A.1
  • 47
    • 84879090710 scopus 로고    scopus 로고
    • In silico applications of bioisosterism in contemporary medicinal chemistry practice
    • 10.1002/wcms.1148 1:CAS:528:DC%2BC3sXhtV2ntrfN
    • Papadatos G, Brown N (2013) In silico applications of bioisosterism in contemporary medicinal chemistry practice. WIREs Comput Mol Sci 3:339-354
    • (2013) WIREs Comput Mol Sci , vol.3 , pp. 339-354
    • Papadatos, G.1    Brown, N.2
  • 49
    • 84864268973 scopus 로고    scopus 로고
    • Relating molecular properties and in vitro assay results to in vivo drug disposition and toxicity outcomes
    • 10.1021/jm300684u 1:CAS:528:DC%2BC38XovFartbk%3D
    • Sutherland JJ, Raymond JW, Stevens JL, Baker TK, Watson DE (2012) Relating molecular properties and in vitro assay results to in vivo drug disposition and toxicity outcomes. J Med Chem 55:6455-6466
    • (2012) J Med Chem , vol.55 , pp. 6455-6466
    • Sutherland, J.J.1    Raymond, J.W.2    Stevens, J.L.3    Baker, T.K.4    Watson, D.E.5
  • 50
    • 1842450538 scopus 로고    scopus 로고
    • Strain energy of small ring hydrocarbons. Influence of C-H bond dissociation energies
    • 10.1021/ja036309a 1:CAS:528:DC%2BD2cXitValsrw%3D
    • Bach RD, Dmitrenko O (2004) Strain energy of small ring hydrocarbons. Influence of C-H bond dissociation energies. J Am Chem Soc 126:4444-4452
    • (2004) J Am Chem Soc , vol.126 , pp. 4444-4452
    • Bach, R.D.1    Dmitrenko, O.2
  • 51
    • 33845942250 scopus 로고    scopus 로고
    • Cycloalkane and cycloalkene C-H bond dissociation energies
    • 10.1021/ja065348u 1:CAS:528:DC%2BD28Xht12ls7bK
    • Tian Z, Fattahi A, Lis L, Kass SR (2006) Cycloalkane and cycloalkene C-H bond dissociation energies. J Am Chem Soc 128:17087-17092
    • (2006) J Am Chem Soc , vol.128 , pp. 17087-17092
    • Tian, Z.1    Fattahi, A.2    Lis, L.3    Kass, S.R.4
  • 52
    • 0033617099 scopus 로고    scopus 로고
    • Basicities of cycloalkylamines: Baeyer strain theory revisited
    • 10.1016/S0040-4020(99)00242-2 1:CAS:528:DyaK1MXivFWqu78%3D
    • Perrin CL, Fabian MA, Rivero IA (1999) Basicities of cycloalkylamines: Baeyer strain theory revisited. Tetrahedron 55:5773-5780
    • (1999) Tetrahedron , vol.55 , pp. 5773-5780
    • Perrin, C.L.1    Fabian, M.A.2    Rivero, I.A.3
  • 53
    • 84884669039 scopus 로고    scopus 로고
    • ChEMBL version 15 Accessed 30 May 2013
    • ChEMBL version 15. http://www.ebi.ac.uk/chembl. Accessed 30 May 2013
  • 54
    • 77949848865 scopus 로고    scopus 로고
    • Computationally efficient algorithm to identify matched molecular pairs (MMPs) in large data sets
    • 10.1021/ci900450m 1:CAS:528:DC%2BC3cXhtlWltr4%3D
    • Hussain J, Rea C (2010) Computationally efficient algorithm to identify matched molecular pairs (MMPs) in large data sets. J Chem Inf Model 50:339-348
    • (2010) J Chem Inf Model , vol.50 , pp. 339-348
    • Hussain, J.1    Rea, C.2
  • 55
    • 77956016083 scopus 로고    scopus 로고
    • WizePairZ: A novel algorithm to identify, encode, and exploit matched molecular pairs with unspecified cores in medicinal chemistry
    • 10.1021/ci100084s 1:CAS:528:DC%2BC3cXpvVSgs7c%3D
    • Warner DJ, Griffen EJ, St-Gallay SA (2010) WizePairZ: a novel algorithm to identify, encode, and exploit matched molecular pairs with unspecified cores in medicinal chemistry. J Chem Inf Model 50:1350-1357
    • (2010) J Chem Inf Model , vol.50 , pp. 1350-1357
    • Warner, D.J.1    Griffen, E.J.2    St-Gallay, S.A.3
  • 57
    • 0032541311 scopus 로고    scopus 로고
    • Cysteine protease inhibitors cure an experimental Trypanosoma cruzi infection
    • 10.1084/jem.188.4.725 1:CAS:528:DyaK1cXlsFClsbw%3D
    • Engel JC, Doyle PS, Hsieh I, McKerrow JH (1998) Cysteine protease inhibitors cure an experimental Trypanosoma cruzi infection. J Exp Med 188:725-734
    • (1998) J Exp Med , vol.188 , pp. 725-734
    • Engel, J.C.1    Doyle, P.S.2    Hsieh, I.3    McKerrow, J.H.4
  • 58
    • 0002921521 scopus 로고
    • Nova tripanozomiaze humana: Estudos sobre a morfolojia e o ciclo evolutivo do Schizotrypanum Cruzi n. Gen., N. Sp., ajente etiolojico de nova entidade morbida do homem
    • 10.1590/S0074-02761909000200008
    • Chagas C (1909) Nova tripanozomiaze humana: estudos sobre a morfolojia e o ciclo evolutivo do Schizotrypanum Cruzi n. gen., n. sp., ajente etiolojico de nova entidade morbida do homem. Mem Inst Oswaldo Cruz 1:159-218
    • (1909) Mem Inst Oswaldo Cruz , vol.1 , pp. 159-218
    • Chagas, C.1
  • 59
    • 38149118059 scopus 로고    scopus 로고
    • Potency and selectivity of P2/P3-modified inhibitors of cysteine proteases from trypanosomes
    • 10.1016/j.bmcl.2007.11.070 1:CAS:528:DC%2BD1cXosFWmtg%3D%3D
    • Jaishankar P, Hansell E, Zhao D-M, Doyle PS, McKerrow JH, Renslo AR (2008) Potency and selectivity of P2/P3-modified inhibitors of cysteine proteases from trypanosomes. Bioorg Med Chem Lett 18:624-628
    • (2008) Bioorg Med Chem Lett , vol.18 , pp. 624-628
    • Jaishankar, P.1    Hansell, E.2    Zhao, D.-M.3    Doyle, P.S.4    McKerrow, J.H.5    Renslo, A.R.6
  • 60
    • 84860456763 scopus 로고    scopus 로고
    • Enantiomeric pairs reveal that key medicinal chemistry parameters vary more than simple physical property based models can explain
    • 10.1039/c2md20010d 1:CAS:528:DC%2BC38XmsFart7s%3D
    • Leach AG, Pilling EA, Rabow AA, Tomasi S, Asaad N, Buurma NJ, Ballard A, Narduolo S (2012) Enantiomeric pairs reveal that key medicinal chemistry parameters vary more than simple physical property based models can explain. Med Chem Commun 3:528-540
    • (2012) Med Chem Commun , vol.3 , pp. 528-540
    • Leach, A.G.1    Pilling, E.A.2    Rabow, A.A.3    Tomasi, S.4    Asaad, N.5    Buurma, N.J.6    Ballard, A.7    Narduolo, S.8
  • 62
    • 17844388776 scopus 로고    scopus 로고
    • OMEGA Santa Fe, NM 87508 Accessed 28 Feb 2013
    • OMEGA.OpenEye Scientific Software, Santa Fe, NM 87508. http://www.eyesopen.com/omega. Accessed 28 Feb 2013
    • OpenEye Scientific Software
  • 63
    • 77951986384 scopus 로고    scopus 로고
    • Conformer Generation with OMEGA: Algorithm and validation using high quality structures from the protein databank and Cambridge structural database
    • Hawkins PCD, Skillman AG, Warren GL, Ellingson BA, Stahl MT (2010) Conformer Generation with OMEGA: Algorithm and validation using high quality structures from the protein databank and Cambridge structural database. J Chem Inf Model 50:572-584
    • (2010) J Chem Inf Model , vol.50 , pp. 572-584
    • Pcd, H.1    Skillman, A.G.2    Warren, G.L.3    Ellingson, B.A.4    Stahl, M.T.5
  • 64
    • 5544242529 scopus 로고    scopus 로고
    • MMFF VI. MMFF94S option for energy minimization studies
    • 10.1002/(SICI)1096-987X(199905)20:7<720: AID-JCC7>3.0.CO;2-X 1:CAS:528:DyaK1MXjtVSlsrc%3D
    • Halgren TA (1999) MMFF VI. MMFF94S option for energy minimization studies. J Comp Chem 20:720-729
    • (1999) J Comp Chem , vol.20 , pp. 720-729
    • Halgren, T.A.1
  • 65
    • 17844388776 scopus 로고    scopus 로고
    • SZYBKI Santa Fe, NM 87508 Accessed 28 Feb 2013
    • SZYBKI. OpenEye Scientific Software, Santa Fe, NM 87508. http://www.eyesopen.com/szybki. Accessed 28 Feb 2013
    • OpenEye Scientific Software
  • 66
    • 84884671127 scopus 로고    scopus 로고
    • GLIDE Accessed 30 May 2013
    • GLIDE. http://www.schrodinger.com/productpage/14/5/21/. Accessed 30 May 2013


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.