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Volumn 58, Issue 6, 2013, Pages 551-560

Sequencing and bioinformatics analysis of the metal-related genes in Acidithiobacillus ferrooxidans strain DC

Author keywords

[No Author keywords available]

Indexed keywords

ACIDITHIOBACILLUS FERROOXIDANS;

EID: 84884673353     PISSN: 00155632     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12223-013-0244-8     Document Type: Article
Times cited : (7)

References (33)
  • 1
    • 0032841842 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis expresses a novel pH-dependent divalent cation transporter belonging to the Nramp family
    • doi:10.1084/jem.190.5.717
    • Agranoff D, Monahan IM, Mangan JA, Butcher PD, Krishna S (1999) Mycobacterium tuberculosis expresses a novel pH-dependent divalent cation transporter belonging to the Nramp family. J Exp Med 190(5): 717-724. doi: 10. 1084/jem. 190. 5. 717.
    • (1999) J Exp Med , vol.190 , Issue.5 , pp. 717-724
    • Agranoff, D.1    Monahan, I.M.2    Mangan, J.A.3    Butcher, P.D.4    Krishna, S.5
  • 2
    • 0034016916 scopus 로고    scopus 로고
    • The chromosomal arsenic resistance genes of Thiobacillus ferrooxidans have an unusual arrangement and confer increased arsenic and antimony resistance to Escherichia coli
    • doi:10.1128/aem.66.5.1826-1833.2000
    • Butcher BG, Deane SM, Rawlings DE (2000) The chromosomal arsenic resistance genes of Thiobacillus ferrooxidans have an unusual arrangement and confer increased arsenic and antimony resistance to Escherichia coli. Appl Environ Microbiol 66(5): 1826-1833. doi: 10. 1128/aem. 66. 5. 1826-1833. 2000.
    • (2000) Appl Environ Microbiol , vol.66 , Issue.5 , pp. 1826-1833
    • Butcher, B.G.1    Deane, S.M.2    Rawlings, D.E.3
  • 3
    • 33947400266 scopus 로고    scopus 로고
    • Recent progress in structure-function analyses of Nramp proton-dependent metal-ion transporters
    • doi:10.1139/o06-193
    • Courville P, Chaloupka R, Cellier MFM (2006) Recent progress in structure-function analyses of Nramp proton-dependent metal-ion transporters. Biochem Cell Biol 84(6): 960-978. doi: 10. 1139/o06-193.
    • (2006) Biochem Cell Biol , vol.84 , Issue.6 , pp. 960-978
    • Courville, P.1    Chaloupka, R.2    Cellier, M.F.M.3
  • 4
    • 0037084179 scopus 로고    scopus 로고
    • The distinct methods by which manganese and iron regulate the Nramp transporters in yeast
    • Culotta M (2002) The distinct methods by which manganese and iron regulate the Nramp transporters in yeast. Biochem J 362: 119-124.
    • (2002) Biochem J , vol.362 , pp. 119-124
    • Culotta, M.1
  • 5
    • 0041924004 scopus 로고    scopus 로고
    • Growth in sulfidic mineral environments: metal resistance mechanisms in acidophilic micro-organisms
    • doi:10.1099/mic.0.26296-0
    • Dopson M (2003) Growth in sulfidic mineral environments: metal resistance mechanisms in acidophilic micro-organisms. Microbiology 149(8): 1959-1970. doi: 10. 1099/mic. 0. 26296-0.
    • (2003) Microbiology , vol.149 , Issue.8 , pp. 1959-1970
    • Dopson, M.1
  • 6
    • 0041940266 scopus 로고    scopus 로고
    • Iron, manganese, and cobalt transport by Nramp1 (Slc11a1) and Nramp2 (Slc11a2) expressed at the plasma membrane
    • doi:10.1182/blood-2003-02-0425
    • Forbes JR (2003) Iron, manganese, and cobalt transport by Nramp1 (Slc11a1) and Nramp2 (Slc11a2) expressed at the plasma membrane. Blood 102(5): 1884-1892. doi: 10. 1182/blood-2003-02-0425.
    • (2003) Blood , vol.102 , Issue.5 , pp. 1884-1892
    • Forbes, J.R.1
  • 7
    • 0037701544 scopus 로고    scopus 로고
    • Molecular analysis of the copper-transporting efflux system CusCFBA of Escherichia coli
    • doi:10. 1128/jb.185.13.3804-3812.2003
    • Franke S, Grass G, Rensing C, Nies DH (2003) Molecular analysis of the copper-transporting efflux system CusCFBA of Escherichia coli. J Bacteriol 185(13): 3804-3812. doi: 10. 1128/jb. 185. 13. 3804-3812. 2003.
    • (2003) J Bacteriol , vol.185 , Issue.13 , pp. 3804-3812
    • Franke, S.1    Grass, G.2    Rensing, C.3    Nies, D.H.4
  • 8
    • 0029153503 scopus 로고
    • Oxidation of galena by Thiobacillus ferrooxidans and Thiobacillus thiooxidans
    • doi:10. 1139/m95-067
    • Garcia O Jr, Tuovinen OH, Bigham JM (1995) Oxidation of galena by Thiobacillus ferrooxidans and Thiobacillus thiooxidans. Can J Microbiol 41(6): 508-514. doi: 10. 1139/m95-067.
    • (1995) Can J Microbiol , vol.41 , Issue.6 , pp. 508-514
    • Garcia Jr., O.1    Tuovinen, O.H.2    Bigham, J.M.3
  • 9
    • 0035696323 scopus 로고    scopus 로고
    • Bacterial zinc transporters and regulators
    • doi:10.1023/a:1012984713391
    • Hantke K (2001) Bacterial zinc transporters and regulators. Biometals 14(3): 239-249. doi: 10. 1023/a: 1012984713391.
    • (2001) Biometals , vol.14 , Issue.3 , pp. 239-249
    • Hantke, K.1
  • 10
    • 79956087446 scopus 로고    scopus 로고
    • Switch or funnel: how RND-type transport systems control periplasmic metal homeostasis
    • doi:10.1128/jb.01323-10
    • Kim E, Nies DH, McEvoy MM, Rensing C (2011) Switch or funnel: how RND-type transport systems control periplasmic metal homeostasis. J Bacteriol 193(10): 2381-2387. doi: 10. 1128/jb. 01323-10.
    • (2011) J Bacteriol , vol.193 , Issue.10 , pp. 2381-2387
    • Kim, E.1    Nies, D.H.2    McEvoy, M.M.3    Rensing, C.4
  • 11
    • 80053623377 scopus 로고    scopus 로고
    • Insights into the pH up-shift responsive mechanism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling
    • doi:10.1007 /s122 23-01 1-0 067-4
    • Li Q, Ren Y, Qiu G, Li N, Liu H, Dai Z, Fu X, Shen L, Liang Y, Yin H, Liu X (2011) Insights into the pH up-shift responsive mechanism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling. Folia Microbiol (Praha) 56(5): 439-451. doi: 10. 1007 /s122 23-01 1-0 067-4.
    • (2011) Folia Microbiol (Praha) , vol.56 , Issue.5 , pp. 439-451
    • Li, Q.1    Ren, Y.2    Qiu, G.3    Li, N.4    Liu, H.5    Dai, Z.6    Fu, X.7    Shen, L.8    Liang, Y.9    Yin, H.10    Liu, X.11
  • 12
    • 0001726322 scopus 로고    scopus 로고
    • Negative control of heavy metal uptake by the Saccharomyces cerevisiae BSD2 gene
    • doi:10.1074/jbc.272.18.11763
    • Liu X, Supek F, Nelson N, Culotta VC (1997) Negative control of heavy metal uptake by the Saccharomyces cerevisiae BSD2 gene. J Biol Chem 272(18): 11763-11769. doi: 10. 1074/jbc. 272. 18. 11763.
    • (1997) J Biol Chem , vol.272 , Issue.18 , pp. 11763-11769
    • Liu, X.1    Supek, F.2    Nelson, N.3    Culotta, V.C.4
  • 13
    • 50249135361 scopus 로고    scopus 로고
    • Insights into two high homogenous genes involved in copper homeostasis in Acidithiobacillus ferrooxidans
    • doi:10.1007/s00284-008-9189-6
    • Luo Y, Liu Y, Zhang C, Luo H, Guan H, Liao H, Qiu G, Liu X (2008) Insights into two high homogenous genes involved in copper homeostasis in Acidithiobacillus ferrooxidans. Curr Microbiol 57(4): 274-280. doi: 10. 1007/s00284-008-9189-6.
    • (2008) Curr Microbiol , vol.57 , Issue.4 , pp. 274-280
    • Luo, Y.1    Liu, Y.2    Zhang, C.3    Luo, H.4    Guan, H.5    Liao, H.6    Qiu, G.7    Liu, X.8
  • 14
    • 15744374882 scopus 로고    scopus 로고
    • Metal ion homeostasis in Bacillus subtilis
    • doi:10.1016/j.mib.2005.02.007
    • Moore CM, Helmann JD (2005) Metal ion homeostasis in Bacillus subtilis. Curr Opin Microbiol 8(2): 188-195. doi: 10. 1016/j. mib. 2005. 02. 007.
    • (2005) Curr Opin Microbiol , vol.8 , Issue.2 , pp. 188-195
    • Moore, C.M.1    Helmann, J.D.2
  • 15
    • 70349427115 scopus 로고    scopus 로고
    • Transcriptional and functional studies of Acidithiobacillus ferrooxidans genes related to survival in the presence of copper
    • doi:10.1128/aem.00308-09
    • Navarro CA, Orellana LH, Mauriaca C, Jerez CA (2009) Transcriptional and functional studies of Acidithiobacillus ferrooxidans genes related to survival in the presence of copper. Appl Environ Microbiol 75(19): 6102-6109. doi: 10. 1128/aem. 00308-09.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.19 , pp. 6102-6109
    • Navarro, C.A.1    Orellana, L.H.2    Mauriaca, C.3    Jerez, C.A.4
  • 16
    • 33746890568 scopus 로고    scopus 로고
    • The NRAMP family of metal-ion transporters
    • doi:10.1016/j.bbamcr.2006.05.007
    • Nevo Y, Nelson N (2006) The NRAMP family of metal-ion transporters. Biochim Biophys Acta 1763(7): 609-620. doi: 10. 1016/j. bbamcr. 2006. 05. 007.
    • (2006) Biochim Biophys Acta , vol.1763 , Issue.7 , pp. 609-620
    • Nevo, Y.1    Nelson, N.2
  • 17
    • 0029071561 scopus 로고
    • Ion efflux systems involved in bacterial metal resistances
    • doi:10.1007/bf01569902
    • Nies DH, Silver S (1995) Ion efflux systems involved in bacterial metal resistances. J Ind Microbiol Biot 14(2): 186-199. doi: 10. 1007/bf01569902.
    • (1995) J Ind Microbiol Biot , vol.14 , Issue.2 , pp. 186-199
    • Nies, D.H.1    Silver, S.2
  • 18
    • 77954643198 scopus 로고    scopus 로고
    • Ion channel activity of transmembrane segment 6 of Escherichia coli proton-dependent manganese transporter
    • doi:10.1002/bip.21452
    • Ňuňuková V, Urbánková E, Jelokhani-Niaraki M, Chaloupka R (2010) Ion channel activity of transmembrane segment 6 of Escherichia coli proton-dependent manganese transporter. Biopolymers 93(8): 718-726. doi: 10. 1002/bip. 21452.
    • (2010) Biopolymers , vol.93 , Issue.8 , pp. 718-726
    • Ňuňuková, V.1    Urbánková, E.2    Jelokhani-Niaraki, M.3    Chaloupka, R.4
  • 19
    • 0033773040 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae expresses three functionally distinct homologues of the Nramp family of metal transporters
    • doi:10.1128/mcb.20.21.7893-7902.2000
    • Portnoy ME, Liu XF, Culotta VC (2000) Saccharomyces cerevisiae expresses three functionally distinct homologues of the Nramp family of metal transporters. Mol Cell Biol 20(21): 7893-7902. doi: 10. 1128/mcb. 20. 21. 7893-7902. 2000.
    • (2000) Mol Cell Biol , vol.20 , Issue.21 , pp. 7893-7902
    • Portnoy, M.E.1    Liu, X.F.2    Culotta, V.C.3
  • 20
    • 60149091830 scopus 로고    scopus 로고
    • The third and fourth transmembrane domains of Slc11a1: comparison of their structures and positioning in phospholipid model membranes
    • doi:10.1002/bip.21115
    • Qi H, Yang L, Xue R, Song Y, Wang S, Li F (2009) The third and fourth transmembrane domains of Slc11a1: comparison of their structures and positioning in phospholipid model membranes. Biopolymers 92(1): 52-64. doi: 10. 1002/bip. 21115.
    • (2009) Biopolymers , vol.92 , Issue.1 , pp. 52-64
    • Qi, H.1    Yang, L.2    Xue, R.3    Song, Y.4    Wang, S.5    Li, F.6
  • 21
    • 4143137531 scopus 로고    scopus 로고
    • Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides
    • doi:10.1128/ aem.70.8.4491-4498.2004
    • Ramírez P, Guiliani N, Valenzuela L, Beard S, Jerez CA (2004) Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides. Appl Environ Microbiol 70(8): 4491-4498. doi: 10. 1128/ aem. 70. 8. 4491-4498. 2004.
    • (2004) Appl Environ Microbiol , vol.70 , Issue.8 , pp. 4491-4498
    • Ramírez, P.1    Guiliani, N.2    Valenzuela, L.3    Beard, S.4    Jerez, C.A.5
  • 22
    • 0036405454 scopus 로고    scopus 로고
    • Heavy metal mining using microbes 1
    • doi:10.1146/annurev.micro.56.012302.161052
    • Rawlings DE (2002) Heavy metal mining using microbes 1. Annu Rev Microbiol 56(1): 65-91. doi: 10. 1146/annurev. micro. 56. 012302. 161052.
    • (2002) Annu Rev Microbiol , vol.56 , Issue.1 , pp. 65-91
    • Rawlings, D.E.1
  • 23
    • 0028202450 scopus 로고
    • Molecular genetics of Thiobacillus ferrooxidans
    • Rawlings DE, Kusano T (1994) Molecular genetics of Thiobacillus ferrooxidans. Microbiol Res 58: 39-55.
    • (1994) Microbiol Res , vol.58 , pp. 39-55
    • Rawlings, D.E.1    Kusano, T.2
  • 24
    • 77957657938 scopus 로고    scopus 로고
    • Transporter protein genes are differentially expressed in Acidithiobacillus ferrooxidans LR maintained in contact with covellite
    • doi:10.1007/s11274-010-0392-9
    • Reis FC, Madureira DJ, Vicentini R, Carlos C, Ferraz LFC, Garcia O, Ottoboni LMM (2010) Transporter protein genes are differentially expressed in Acidithiobacillus ferrooxidans LR maintained in contact with covellite. World J Microbiol Biotechnol 26(11): 2061-2068. doi: 10. 1007/s11274-010-0392-9.
    • (2010) World J Microbiol Biotechnol , vol.26 , Issue.11 , pp. 2061-2068
    • Reis, F.C.1    Madureira, D.J.2    Vicentini, R.3    Carlos, C.4    Ferraz, L.F.C.5    Garcia, O.6    Ottoboni, L.M.M.7
  • 25
    • 0024311588 scopus 로고
    • Cloning and expression of Thiobacillus ferrooxidans mercury ion resistance genes in Escherichia coli
    • Shiratori T, Inoue C, Sugawara K, Kusano T, Kitagawa Y (1989) Cloning and expression of Thiobacillus ferrooxidans mercury ion resistance genes in Escherichia coli. J Bacteriol 171(6): 3458-3464.
    • (1989) J Bacteriol , vol.171 , Issue.6 , pp. 3458-3464
    • Shiratori, T.1    Inoue, C.2    Sugawara, K.3    Kusano, T.4    Kitagawa, Y.5
  • 28
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034. 0031-research 0034. 0011
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, van Roy N, De Paepe A, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3(7): research0034. 0031-research 0034. 0011.
    • (2002) Genome Biol , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 29
    • 61449325206 scopus 로고    scopus 로고
    • The Thlaspi caerulescens NRAMP homologue TcNRAMP3 is capable of divalent cation transport
    • doi:10.1007/s12033-008-9088-x
    • Wei W, Chai T, Zhang Y, Han L, Xu J, Guan Z (2009) The Thlaspi caerulescens NRAMP homologue TcNRAMP3 is capable of divalent cation transport. Mol Biotechnol 41(1): 15-21. doi: 10. 1007/s12033-008-9088-x.
    • (2009) Mol Biotechnol , vol.41 , Issue.1 , pp. 15-21
    • Wei, W.1    Chai, T.2    Zhang, Y.3    Han, L.4    Xu, J.5    Guan, Z.6
  • 30
    • 79551543500 scopus 로고    scopus 로고
    • differential expression in response to copper in A. ferrooxidans strains possessing dissimilar copper resistance
    • Wu X, Hu Q, Hou D, Miao B, Liu X (2010) differential expression in response to copper in A. ferrooxidans strains possessing dissimilar copper resistance. J Gen Appl Microbiol 56: 491-498.
    • (2010) J Gen Appl Microbiol , vol.56 , pp. 491-498
    • Wu, X.1    Hu, Q.2    Hou, D.3    Miao, B.4    Liu, X.5
  • 31
    • 79958219339 scopus 로고    scopus 로고
    • Bioleaching of chalcopyrite by Acidithiobacillus ferrooxidans DY15, DY26 and DC and difference expressions of gene Afe0022
    • Wu X, Yuan P, Hu Q, Hou D, Miao B, Qiu G (2011) Bioleaching of chalcopyrite by Acidithiobacillus ferrooxidans DY15, DY26 and DC and difference expressions of gene Afe0022. Chin J Nonferrous Metals 21(4): 0392-0398.
    • (2011) Chin J Nonferrous Metals , vol.21 , Issue.4 , pp. 0392-0398
    • Wu, X.1    Yuan, P.2    Hu, Q.3    Hou, D.4    Miao, B.5    Qiu, G.6
  • 32
    • 78651107369 scopus 로고    scopus 로고
    • Differential expression of genes encoding sulfur metabolism-related periplasmic proteins of Acidithiobacillus ferrooxidans ATCC 23270
    • doi:10.1016/s1003-6326(10)60656-5
    • Xia J, Zhang R, Zhang Q, Wu S, Zhang C, Nie Z, Qiu G (2010) Differential expression of genes encoding sulfur metabolism-related periplasmic proteins of Acidithiobacillus ferrooxidans ATCC 23270. Trans Nonferrous Metals Soc China 20(12): 2366-2370. doi: 10. 1016/s1003-6326(10)60656-5.
    • (2010) Trans Nonferrous Metals Soc China , vol.20 , Issue.12 , pp. 2366-2370
    • Xia, J.1    Zhang, R.2    Zhang, Q.3    Wu, S.4    Zhang, C.5    Nie, Z.6    Qiu, G.7
  • 33
    • 77955320388 scopus 로고    scopus 로고
    • Diversity of microbial community at acid mine drainages from Dachang metals-rich mine, China
    • doi:10.1016/s1003-6326(09)60263-6
    • Zhou Z, Yin H, Liu Y, Xie M, Qiu G, Liu X (2010) Diversity of microbial community at acid mine drainages from Dachang metals-rich mine, China. Trans Nonferrous Metals Soc China 20(6): 1097-1103. doi: 10. 1016/s1003-6326(09)60263-6.
    • (2010) Trans Nonferrous Metals Soc China , vol.20 , Issue.6 , pp. 1097-1103
    • Zhou, Z.1    Yin, H.2    Liu, Y.3    Xie, M.4    Qiu, G.5    Liu, X.6


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