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Volumn 56, Issue 5, 2011, Pages 439-451

Insights into the pH up-shift responsive mechanism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE; HYDROGEN; PHOSPHATE; SULFUR;

EID: 80053623377     PISSN: 00155632     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12223-011-0067-4     Document Type: Article
Times cited : (11)

References (56)
  • 1
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: from disarray to consolidation and consensus
    • Allison DB, Cui X, Page GP, Sabripour M (2006) Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet 7: 55-65.
    • (2006) Nat Rev Genet , vol.7 , pp. 55-65
    • Allison, D.B.1    Cui, X.2    Page, G.P.3    Sabripour, M.4
  • 2
    • 0025970548 scopus 로고
    • Effect of external pH perturbations on in vivo protein synthesis by the acidophilic bacterium Thiobacillus ferrooxidans
    • Amaro AM, Chamorro D, Seeger M, Arredondo R, Peirano I, Jerez CA (1991) Effect of external pH perturbations on in vivo protein synthesis by the acidophilic bacterium Thiobacillus ferrooxidans. J Bacteriol 173: 910-915.
    • (1991) J Bacteriol , vol.173 , pp. 910-915
    • Amaro, A.M.1    Chamorro, D.2    Seeger, M.3    Arredondo, R.4    Peirano, I.5    Jerez, C.A.6
  • 3
    • 0032975383 scopus 로고    scopus 로고
    • Changes in membrane fatty acid composition of Pediococcus sp. strain NRRL B-2354 in response to growth conditions and its effect on thermal resistance
    • Annous BA, Kozempel MF, Kurantz MJ (1999) Changes in membrane fatty acid composition of Pediococcus sp. strain NRRL B-2354 in response to growth conditions and its effect on thermal resistance. Appl Environ Microbiol 65: 2857-2862.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2857-2862
    • Annous, B.A.1    Kozempel, M.F.2    Kurantz, M.J.3
  • 5
    • 0042532003 scopus 로고    scopus 로고
    • The pst operon of Bacillus subtilis is specifically induced by alkali stress
    • Atalla A, Schumann W (2003) The pst operon of Bacillus subtilis is specifically induced by alkali stress. J Bacteriol 185: 5019-5022.
    • (2003) J Bacteriol , vol.185 , pp. 5019-5022
    • Atalla, A.1    Schumann, W.2
  • 6
    • 34047264809 scopus 로고    scopus 로고
    • Life in acid: pH homeostasis in acidophiles
    • Baker-Austin C, Dopson M (2007) Life in acid: pH homeostasis in acidophiles. Trends Microbiol 15: 165-171.
    • (2007) Trends Microbiol , vol.15 , pp. 165-171
    • Baker-Austin, C.1    Dopson, M.2
  • 7
    • 50249106921 scopus 로고    scopus 로고
    • Response of Acidithiobacillus ferrooxidans ATCC 23270 gene expression to acid stress
    • Chao J, Wang W, Xiao S, Liu X (2008) Response of Acidithiobacillus ferrooxidans ATCC 23270 gene expression to acid stress. World J Microbiol Biotechnol 24: 2103-2109.
    • (2008) World J Microbiol Biotechnol , vol.24 , pp. 2103-2109
    • Chao, J.1    Wang, W.2    Xiao, S.3    Liu, X.4
  • 8
    • 0027960657 scopus 로고
    • The chromosomal tetracycline resistance locus of Bacillus subtilis encodes a Na+/H + antiporter that is physiologically important at elevated pH
    • Cheng J, Guffanti AA, Krulwich TA (1994) The chromosomal tetracycline resistance locus of Bacillus subtilis encodes a Na+/H + antiporter that is physiologically important at elevated pH. J Biol Chem 269: 27365-27371.
    • (1994) J Biol Chem , vol.269 , pp. 27365-27371
    • Cheng, J.1    Guffanti, A.A.2    Krulwich, T.A.3
  • 9
    • 0029963317 scopus 로고    scopus 로고
    • Chromosomal tetA(L) gene of Bacillus subtilis: regulation of expression and physiology of a tetA(L) deletion strain
    • Cheng J, Guffanti AA, Wang W, Krulwich TA, Bechhofer DH (1996) Chromosomal tetA(L) gene of Bacillus subtilis: regulation of expression and physiology of a tetA(L) deletion strain. J Bacteriol 178: 2853-2860.
    • (1996) J Bacteriol , vol.178 , pp. 2853-2860
    • Cheng, J.1    Guffanti, A.A.2    Wang, W.3    Krulwich, T.A.4    Bechhofer, D.H.5
  • 10
    • 0021684161 scopus 로고
    • Current views on the regulation of autotrophic carbon dioxide fixation via the Calvin cycle in bacteria
    • Dijkhuizen L, Harder W (1984) Current views on the regulation of autotrophic carbon dioxide fixation via the Calvin cycle in bacteria. Antonie van Leeuwenhoek 50: 473-487.
    • (1984) Antonie Van Leeuwenhoek , vol.50 , pp. 473-487
    • Dijkhuizen, L.1    Harder, W.2
  • 11
    • 0033456155 scopus 로고    scopus 로고
    • The synthesis of Rhodobacter capsulatus HupSL hydrogenase is regulated by the two-component HupT/HupR system
    • Dischert W, Vignais PM, Colbeau A (1999) The synthesis of Rhodobacter capsulatus HupSL hydrogenase is regulated by the two-component HupT/HupR system. Mol Microbiol 34: 995-1006.
    • (1999) Mol Microbiol , vol.34 , pp. 995-1006
    • Dischert, W.1    Vignais, P.M.2    Colbeau, A.3
  • 12
    • 0024997538 scopus 로고
    • Thiobacillus ferrooxidans, a facultative hydrogen oxidizer
    • Drobner E, Huber H, Stetter KO (1990) Thiobacillus ferrooxidans, a facultative hydrogen oxidizer. Appl Environ Microbiol 56: 2922-2923.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 2922-2923
    • Drobner, E.1    Huber, H.2    Stetter, K.O.3
  • 13
    • 0036299641 scopus 로고    scopus 로고
    • Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes
    • Fisher MA, Plikaytis BB, Shinnick TM (2002) Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes. J Bacteriol 184: 4025-4032.
    • (2002) J Bacteriol , vol.184 , pp. 4025-4032
    • Fisher, M.A.1    Plikaytis, B.B.2    Shinnick, T.M.3
  • 14
    • 24044460436 scopus 로고    scopus 로고
    • NhaK, a novel monovalent cation/H + antiporter of Bacillus subtilis
    • Fujisawa M, Kusomoto A, Wada Y, Tsuchiya T, Ito M (2005) NhaK, a novel monovalent cation/H + antiporter of Bacillus subtilis. Arch Microbiol 183: 411-420.
    • (2005) Arch Microbiol , vol.183 , pp. 411-420
    • Fujisawa, M.1    Kusomoto, A.2    Wada, Y.3    Tsuchiya, T.4    Ito, M.5
  • 16
    • 33745005291 scopus 로고    scopus 로고
    • Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins
    • Gao H, Yang ZK, Wu L, Thompson DK, Zhou J (2006) Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins. J Bacteriol 188: 4560-4569.
    • (2006) J Bacteriol , vol.188 , pp. 4560-4569
    • Gao, H.1    Yang, Z.K.2    Wu, L.3    Thompson, D.K.4    Zhou, J.5
  • 18
    • 0035037364 scopus 로고    scopus 로고
    • DNA micro-array analysis of cyanobacterial gene expression during acclimation to high light
    • Hihara Y, Kamei A, Kanehisa M, Kaplan A, Ikeuchi M (2001) DNA micro-array analysis of cyanobacterial gene expression during acclimation to high light. Plant Cell 13: 793-806.
    • (2001) Plant Cell , vol.13 , pp. 793-806
    • Hihara, Y.1    Kamei, A.2    Kanehisa, M.3    Kaplan, A.4    Ikeuchi, M.5
  • 19
    • 34047237283 scopus 로고    scopus 로고
    • Mechanistic diversity in the RuBisCO superfamily: the "enolase" in the methionine salvage pathway in Geobacillus kaustophilus
    • Imker HJ, Fedorov AA, Fedorov EV, Almo SC, Gerlt JA (2007) Mechanistic diversity in the RuBisCO superfamily: the "enolase" in the methionine salvage pathway in Geobacillus kaustophilus. Biochemistry 46: 4077-4089.
    • (2007) Biochemistry , vol.46 , pp. 4077-4089
    • Imker, H.J.1    Fedorov, A.A.2    Fedorov, E.V.3    Almo, S.C.4    Gerlt, J.A.5
  • 22
    • 0034710992 scopus 로고    scopus 로고
    • DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli
    • Khodursky A, Peter B, Cozzerelli N, Botstein D, Brown P, Yanofsky C (2000) DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli. Proc Natl Acad Sci 97: 12170-12175.
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 12170-12175
    • Khodursky, A.1    Peter, B.2    Cozzerelli, N.3    Botstein, D.4    Brown, P.5    Yanofsky, C.6
  • 23
    • 0028959480 scopus 로고
    • Isolation and gene cloning of an alkaline shock protein in methicillin resistant Staphylococcus aureus
    • Kuroda M, Ohta T, Hayashi H (1995) Isolation and gene cloning of an alkaline shock protein in methicillin resistant Staphylococcus aureus. Biochem Biophys Res Commun 207: 978-984.
    • (1995) Biochem Biophys Res Commun , vol.207 , pp. 978-984
    • Kuroda, M.1    Ohta, T.2    Hayashi, H.3
  • 25
    • 0023874416 scopus 로고
    • The sulfate activation locus of Escherichia coli K12: cloning, genetic, and enzymatic characterization
    • Leyh TS, Taylor JC, Markham GD (1988) The sulfate activation locus of Escherichia coli K12: cloning, genetic, and enzymatic characterization. J Biol Chem 263: 2409-2416.
    • (1988) J Biol Chem , vol.263 , pp. 2409-2416
    • Leyh, T.S.1    Taylor, J.C.2    Markham, G.D.3
  • 26
    • 58649101879 scopus 로고    scopus 로고
    • Development and evaluation of whole-genome oligonucleotide array for Acidithiobacillus ferrooxidans ATCC 23270
    • Li Q, Shen L, Luo H, Yin H, Liao L, Qiu G, Liu X (2008) Development and evaluation of whole-genome oligonucleotide array for Acidithiobacillus ferrooxidans ATCC 23270. Trans Nonferrous Met Soc China 18: 1343-1351.
    • (2008) Trans Nonferrous Met Soc China , vol.18 , pp. 1343-1351
    • Li, Q.1    Shen, L.2    Luo, H.3    Yin, H.4    Liao, L.5    Qiu, G.6    Liu, X.7
  • 28
    • 11144263144 scopus 로고    scopus 로고
    • pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12
    • Maurer LM, Yohannes E, Bondurant SS, Radmacher M, Slonczewski JL (2005) pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J Bacteriol 187: 304-319.
    • (2005) J Bacteriol , vol.187 , pp. 304-319
    • Maurer, L.M.1    Yohannes, E.2    Bondurant, S.S.3    Radmacher, M.4    Slonczewski, J.L.5
  • 29
    • 1642480172 scopus 로고    scopus 로고
    • Bioleaching review part B: progress in bioleaching: applications of microbial processes by the mineral industries
    • Olson JG, Brierley JA, Brierley CL (2003) Bioleaching review part B: progress in bioleaching: applications of microbial processes by the mineral industries. Appl Microbiol Biotechnol 63: 249-257.
    • (2003) Appl Microbiol Biotechnol , vol.63 , pp. 249-257
    • Olson, J.G.1    Brierley, J.A.2    Brierley, C.L.3
  • 34
    • 26844536951 scopus 로고    scopus 로고
    • Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates
    • Rawlings DE (2005) Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates. Microb Cell Fact 4: 13.
    • (2005) Microb Cell Fact , vol.4 , pp. 13
    • Rawlings, D.E.1
  • 35
    • 1642480180 scopus 로고    scopus 로고
    • Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation
    • Rohwerder T, Gehrke T, Kinzler K, Sand W (2003) Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation. Appl Microbiol Biotechnol 63: 239-248.
    • (2003) Appl Microbiol Biotechnol , vol.63 , pp. 239-248
    • Rohwerder, T.1    Gehrke, T.2    Kinzler, K.3    Sand, W.4
  • 36
    • 4143145251 scopus 로고    scopus 로고
    • Treatment of Salmonella enterica serovar enteritidis with a sublethal concentration of trisodium phosphate or alkaline pH induces thermotolerance
    • Sampathkumar B, Khachatourians GG, Korber DR (2004) Treatment of Salmonella enterica serovar enteritidis with a sublethal concentration of trisodium phosphate or alkaline pH induces thermotolerance. Appl Environ Microbiol 70: 4613-4620.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4613-4620
    • Sampathkumar, B.1    Khachatourians, G.G.2    Korber, D.R.3
  • 39
    • 0037337513 scopus 로고    scopus 로고
    • Gene expression profile of Campylobacter jejuni in response to growth temperature variation
    • Stintzi A (2003) Gene expression profile of Campylobacter jejuni in response to growth temperature variation. J Bacteriol 185: 2009-2016.
    • (2003) J Bacteriol , vol.185 , pp. 2009-2016
    • Stintzi, A.1
  • 40
    • 0004268763 scopus 로고    scopus 로고
    • G. Storz and R. Hengge-Aronis (Eds.), Washington, DC: American Society for Microbiology
    • Storz G, Hengge-Aronis R (eds) (2000) Bacterial stress responses. American Society for Microbiology, Washington, DC.
    • (2000) Bacterial Stress Responses
  • 41
    • 50949124061 scopus 로고    scopus 로고
    • Global transcriptional response of the alkali-tolerant Cyanobacterium Synechocystis sp. strain PCC 6803 to a pH 10 Environment
    • Summerfield TC, Sherman LA (2008) Global transcriptional response of the alkali-tolerant Cyanobacterium Synechocystis sp. strain PCC 6803 to a pH 10 Environment. Appl Environ Microbiol 74: 5276-5284.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 5276-5284
    • Summerfield, T.C.1    Sherman, L.A.2
  • 42
    • 0023094571 scopus 로고
    • An alkaline shift induces the heat shock response in Escherichia coli
    • Taglicht D, Padan E, Oppenheim AB, Schuldiner S (1987) An alkaline shift induces the heat shock response in Escherichia coli. J Bacteriol 169: 885-887.
    • (1987) J Bacteriol , vol.169 , pp. 885-887
    • Taglicht, D.1    Padan, E.2    Oppenheim, A.B.3    Schuldiner, S.4
  • 45
    • 0016716486 scopus 로고
    • The uptake and assimilation of sulphate by Thiobacillus ferrooxidans
    • Tuovinen OH, Kelley BC, Nicholas DJ (1975) The uptake and assimilation of sulphate by Thiobacillus ferrooxidans. Arch Microbiol 105: 123-127.
    • (1975) Arch Microbiol , vol.105 , pp. 123-127
    • Tuovinen, O.H.1    Kelley, B.C.2    Nicholas, D.J.3
  • 46
    • 0036074090 scopus 로고    scopus 로고
    • No coordinated transcriptional regulation of the sod-kat antioxidative system in Synechocystis sp. PCC 6803
    • Ushimaru T, Nishiyama Y, Hayashi H, Murata N (2002) No coordinated transcriptional regulation of the sod-kat antioxidative system in Synechocystis sp. PCC 6803. J Plant Physiol 159: 805-807.
    • (2002) J Plant Physiol , vol.159 , pp. 805-807
    • Ushimaru, T.1    Nishiyama, Y.2    Hayashi, H.3    Murata, N.4
  • 47
    • 9144245023 scopus 로고    scopus 로고
    • Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis
    • Valdés J, Veloso F, Jedlick E, Holmes D (2003) Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis. BMC Genomics 4: 51.
    • (2003) BMC Genomics , vol.4 , pp. 51
    • Valdés, J.1    Veloso, F.2    Jedlick, E.3    Holmes, D.4
  • 50
    • 0032076479 scopus 로고    scopus 로고
    • Bioenergetics and cytoplasmic membrane stability of the extremely acidophilic, thermophilic archaeon Picrophilus oshimae
    • van de Vossenberg DAJ, Zillig W, Konings WN (1998) Bioenergetics and cytoplasmic membrane stability of the extremely acidophilic, thermophilic archaeon Picrophilus oshimae. Extremophiles 2: 67-74.
    • (1998) Extremophiles , vol.2 , pp. 67-74
    • van de Vossenberg, D.A.J.1    Zillig, W.2    Konings, W.N.3
  • 51
    • 0032817687 scopus 로고    scopus 로고
    • Identification and characterization of hupT, a gene involved in negative regulation of hydrogen oxidation in Bradyrhizobium japonicum
    • van Soom C, Lerouge I, Vanderleyden J, Ruiz-Argueso T, Palacios JM (1999) Identification and characterization of hupT, a gene involved in negative regulation of hydrogen oxidation in Bradyrhizobium japonicum. J Bacteriol 181: 5085-5089.
    • (1999) J Bacteriol , vol.181 , pp. 5085-5089
    • van Soom, C.1    Lerouge, I.2    Vanderleyden, J.3    Ruiz-Argueso, T.4    Palacios, J.M.5
  • 52
    • 40849119815 scopus 로고    scopus 로고
    • The chemolithoautotroph Acidithiobacillus ferrooxidans can survive under phosphate-limiting conditions by expressing a C-P lyase operon that allows it to grow on phosphonates
    • Vera M, Pagliai F, Guiliani N, Jerez CA (2008) The chemolithoautotroph Acidithiobacillus ferrooxidans can survive under phosphate-limiting conditions by expressing a C-P lyase operon that allows it to grow on phosphonates. Appl Environ Microbiol 74: 1829-1836.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1829-1836
    • Vera, M.1    Pagliai, F.2    Guiliani, N.3    Jerez, C.A.4
  • 55
    • 63449133265 scopus 로고    scopus 로고
    • Real-time PCR analysis of the heat-shock response of Acidithiobacillus ferrooxidans ATCC 23270
    • Xiao S, Chao J, Wang W, Fang F, Qiu G, Liu X (2009) Real-time PCR analysis of the heat-shock response of Acidithiobacillus ferrooxidans ATCC 23270. Folia Biol 55: 1-6.
    • (2009) Folia Biol , vol.55 , pp. 1-6
    • Xiao, S.1    Chao, J.2    Wang, W.3    Fang, F.4    Qiu, G.5    Liu, X.6
  • 56
    • 1842844023 scopus 로고    scopus 로고
    • PRIMEGENS: a computer program for robust and efficient design of gene-specific targets on microarrays
    • Xu D, Li G, Wu L, Zhou J, Xu Y (2002) PRIMEGENS: a computer program for robust and efficient design of gene-specific targets on microarrays. Bioinformatics 18: 1432-1437.
    • (2002) Bioinformatics , vol.18 , pp. 1432-1437
    • Xu, D.1    Li, G.2    Wu, L.3    Zhou, J.4    Xu, Y.5


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