Secretome profiling of differentiated neural mes-c-myc A1 cell line endowed with stem cell properties

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1834, Issue 11, 2013, Pages 2385-2395

  Severino, Valeria ^a   Farina, Annarita ^b   Colucci D'Amato, Luca ^a   Reccia, Mafalda Giovanna ^a   Volpicelli, Floriana ^c,d   Parente, Augusto ^a   Chambery, Angela ^a  

^a SECOND UNIVERSITY OF NAPLES   (Italy)

^b UNIVERSITY OF GENEVA   (Switzerland)

^c UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^d INSTITUTE OF GENETICS AND BIOPHYSICS ADRIANO BUZZATI TRAVERSO   (Italy)

Author keywords

Differentiation; LC MS; Mass spectrometry; Neuron; Secretome; Stem cell

Indexed keywords

ACTIN RELATED PROTEIN 3; ALPHA ACTININ 1; ALPHA ACTININ 4; ALPHA ENOLASE; BIGLYCAN; CLUSTERIN; COLLAPSIN RESPONSE MEDIATOR PROTEIN 2; CYSTATIN C; CYTOSOL AMINOPEPTIDASE; DJ 1 PROTEIN; ELONGATION FACTOR 2; EZRIN; FIBRONECTIN; GALECTIN 1; GLUCOSE 6 PHOSPHATE ISOMERASE; HIGH MOBILITY GROUP B1 PROTEIN; LIPOCORTIN 1; LIPOCORTIN 2; MACROPHAGE MIGRATION INHIBITION FACTOR; MOESIN; NUCLEOLIN; OSTEONECTIN; PARATHYMOSIN; PEROXIREDOXIN 1; PEROXIREDOXIN 2; PROTEASE NEXIN I; RADIXIN; SECRETOME; SECRETORY PROTEIN; SERUM ALBUMIN; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CELL ADHESION; EXTRACELLULAR MATRIX; MOUSE; NERVE CELL DIFFERENTIATION; NERVE FIBER GROWTH; NERVOUS SYSTEM DEVELOPMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN SECRETION; UNINDEXED SEQUENCE;

DIFFERENTIATION; LC-MS; MASS SPECTROMETRY; NEURON; SECRETOME; STEM CELL;

ANIMALS; CELL LINE; CHROMATOGRAPHY, LIQUID; EXTRACELLULAR MATRIX; MICE; NEURAL STEM CELLS; NEUROGENESIS; PROTEIN INTERACTION MAPS; PROTEOME; PROTEOMICS; SECRETORY PATHWAY; TANDEM MASS SPECTROMETRY;

EID: 84884670391     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2012.12.005     Document Type: Article

References (50)

1. L. Colucci-D'Amato, and U. di Porzio Neurogenesis in adult CNS: from denial to opportunities and challenges for therapy BioEssays 30 2008 135 145 (Pubitemid 351196948)
2. L.C. Fuentealba, K. Obernier, and A. Alvarez-Buylla Adult neural stem cells bridge their niche Cell Stem Cell 10 2012 698 708
3. M. Cayre, P. Canoll, and J.E. Goldman Cell migration in the normal and pathological postnatal mammalian brain Prog. Neurobiol. 88 2009 41 63
4. D. Schubert Protein secretion by clonal glial and neuronal cell lines Brain Res. 56 1973 387 391
5. D. Schubert, F. Herrera, R. Cumming, J. Read, W. Low, P. Maher, and W.H. Fischer Neural cells secrete a unique repertoire of proteins J. Neurochem. 109 2009 427 435
6. G.L. Colucci-D'Amato, A. Tino, R. Pernas-Alonso, J.M. ffrench-Mullen, and U. di Porzio Neuronal and glial properties coexist in a novel mouse CNS immortalized cell line Exp. Cell Res. 252 1999 383 391 (Pubitemid 29530268)
7. A. Di Lieto, D. Leo, F. Volpicelli, U. di Porzio, and L. Colucci-D'Amato FLUOXETINE modifies the expression of serotonergic markers in a differentiation-dependent fashion in the mesencephalic neural cell line A1 mes c-myc Brain Res. 1143 2007 1 10 (Pubitemid 46440808)
8. M.T. Gentile, Y. Nawa, G. Lunardi, T. Florio, H. Matsui, and L. Colucci-D'Amato Tryptophan hydroxylase 2 (TPH2) in a neuronal cell line: modulation by cell differentiation and NRSF/rest activity J. Neurochem. 123 2012 963 970
9. A. Chambery, L. Colucci-D'Amato, J.P. Vissers, S. Scarpella, J.I. Langridge, and A. Parente Proteomic profiling of proliferating and differentiated neural mes-c-myc A1 cell line from mouse embryonic mesencephalon by LC-MS J. Proteome Res. 8 2009 227 238
10. A. Farina, C. D'Aniello, V. Severino, D.F. Hochstrasser, A. Parente, G. Minchiotti, and A. Chambery Temporal proteomic profiling of embryonic stem cell secretome during cardiac and neural differentiation Proteomics 11 2011 3972 3982
11. M. Rocco, L. Malorni, R. Cozzolino, G. Palmieri, C. Rozzo, A. Manca, A. Parente, and A. Chambery Proteomic profiling of human melanoma metastatic cell line secretomes J. Proteome Res. 10 2011 4703 4714
12. A. Scherl, Y.S. Tsai, S.A. Shaffer, and D.R. Goodlett Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses Proteomics 8 2008 2791 2797
13. L.N. Mueller, O. Rinner, A. Schmidt, S. Letarte, B. Bodenmiller, M.Y. Brusniak, O. Vitek, R. Aebersold, and M. Muller SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling Proteomics 7 2007 3470 3480 (Pubitemid 47597670)
14. A. Keller, A.I. Nesvizhskii, E. Kolker, and R. Aebersold Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search Anal. Chem. 74 2002 5383 5392 (Pubitemid 35215372)
15. A.I. Nesvizhskii, A. Keller, E. Kolker, and R. Aebersold A statistical model for identifying proteins by tandem mass spectrometry Anal. Chem. 75 2003 4646 4658 (Pubitemid 37082259)
16. V. Severino, A. Chambery, M. Vitiello, M. Cantisani, S. Galdiero, M. Galdiero, L. Malorni, A. Di Maro, and A. Parente Proteomic analysis of human U937 cell line activation mediated by Haemophilus influenzae type b P2 porin and its surface-exposed loop 7 J. Proteome Res. 9 2010 1050 1062
17. J.D. Bendtsen, H. Nielsen, G. von Heijne, and S. Brunak Improved prediction of signal peptides: SignalP 3.0 J. Mol. Biol. 340 2004 783 795 (Pubitemid 38829638)
18. J.D. Bendtsen, L.J. Jensen, N. Blom, G. Von Heijne, and S. Brunak Feature-based prediction of non-classical and leaderless protein secretion Protein Eng. Des. Sel. 17 2004 349 356 (Pubitemid 39093515)
19. D. Kiryushko, V. Berezin, and E. Bock Regulators of neurite outgrowth: role of cell adhesion molecules Ann. N. Y. Acad. Sci. 1014 2004 140 154 (Pubitemid 38594800)
20. P. Walter, R. Gilmore, and G. Blobel Protein translocation across the endoplasmic reticulum Cell 38 1984 5 8
21. W. Nickel The mystery of nonclassical protein secretion. A current view on cargo proteins and potential export routes Eur. J. Biochem. 270 2003 2109 2119 (Pubitemid 36608925)
22. J.E. Cavanaugh, J. Ham, M. Hetman, S. Poser, C. Yan, and Z. Xia Differential regulation of mitogen-activated protein kinases ERK1/2 and ERK5 by neurotrophins, neuronal activity, and cAMP in neurons J. Neurosci. 21 2001 434 443 (Pubitemid 32107434)
23. A. Schmandke, A. Schmandke, and S.M. Strittmatter ROCK and Rho: biochemistry and neuronal functions of Rho-associated protein kinases Neuroscientist 13 2007 454 469 (Pubitemid 47437930)
24. M.A. Wozniak, K. Modzelewska, L. Kwong, and P.J. Keely Focal adhesion regulation of cell behavior Biochim. Biophys. Acta 1692 2004 103 119 (Pubitemid 38891769)
25. M.Y. Chang, H. Son, Y.S. Lee, and S.H. Lee Neurons and astrocytes secrete factors that cause stem cells to differentiate into neurons and astrocytes, respectively Mol. Cell. Neurosci. 23 2003 414 426 (Pubitemid 36802011)
26. O. Cordero-Llana, S.A. Scott, S.L. Maslen, J.M. Anderson, J. Boyle, R.R. Chowhdury, P. Tyers, R.A. Barker, C.M. Kelly, A.E. Rosser, E. Stephens, S. Chandran, and M.A. Caldwell Clusterin secreted by astrocytes enhances neuronal differentiation from human neural precursor cells Cell Death Differ. 18 2012 907 913
27. S.M. Hansen, V. Berezin, and E. Bock Signaling mechanisms of neurite outgrowth induced by the cell adhesion molecules NCAM and N-cadherin Cell. Mol. Life Sci. 65 2008 3809 3821
28. P.C. Letourneau, M.L. Condic, and D.M. Snow Interactions of developing neurons with the extracellular matrix J. Neurosci. 14 1994 915 928 (Pubitemid 24081894)
29. H. Togashi, T. Sakisaka, and Y. Takai Cell adhesion molecules in the central nervous system Cell Adh. Migr. 3 2009 29 35
30. D.K. Ditlevsen, G.K. Povlsen, V. Berezin, and E. Bock NCAM-induced intracellular signaling revisited J. Neurosci. Res. 86 2008 727 743 (Pubitemid 351357755)
31. G. Paratcha, F. Ledda, and C.F. Ibanez The neural cell adhesion molecule NCAM is an alternative signaling receptor for GDNF family ligands Cell 113 2003 867 879 (Pubitemid 36792031)
32. D. Muller, Z. Djebbara-Hannas, P. Jourdain, L. Vutskits, P. Durbec, G. Rougon, and J.Z. Kiss Brain-derived neurotrophic factor restores long-term potentiation in polysialic acid-neural cell adhesion molecule-deficient hippocampus Proc. Natl. Acad. Sci. U. S. A. 97 2000 4315 4320 (Pubitemid 30226130)
33. H. Zhang, L. Vutskits, V. Calaora, P. Durbec, and J.Z. Kiss A role for the polysialic acid-neural cell adhesion molecule in PDGF-induced chemotaxis of oligodendrocyte precursor cells J. Cell Sci. 117 2004 93 103 (Pubitemid 38072124)
34. A. Faissner The tenascin gene family in axon growth and guidance Cell Tissue Res. 290 1997 331 341 (Pubitemid 27470066)
35. M.T. Elola, C. Wolfenstein-Todel, M.F. Troncoso, G.R. Vasta, and G.A. Rabinovich Galectins: matricellular glycan-binding proteins linking cell adhesion, migration, and survival Cell. Mol. Life Sci. 64 2007 1679 1700 (Pubitemid 47036942)
36. M. Sakaguchi, Y. Imaizumi, T. Shingo, H. Tada, K. Hayama, O. Yamada, T. Morishita, T. Kadoya, N. Uchiyama, T. Shimazaki, A. Kuno, F. Poirier, J. Hirabayashi, K. Sawamoto, and H. Okano Regulation of adult neural progenitor cells by Galectin-1/beta1 Integrin interaction J. Neurochem. 113 2010 1516 1524
37. A.L. Neisch, and R.G. Fehon Ezrin, Radixin and Moesin: key regulators of membrane-cortex interactions and signaling Curr. Opin. Cell Biol. 23 2011 377 382
38. B.M. Marsick, J.E. San Miguel-Ruiz, and P.C. Letourneau Activation of ezrin/radixin/moesin mediates attractive growth cone guidance through regulation of growth cone actin and adhesion receptors J. Neurosci. 32 2012 282 296
39. J. Tombran-Tink, and C.J. Barnstable PEDF: a multifaceted neurotrophic factor Nat. Rev. Neurosci. 4 2003 628 636 (Pubitemid 37280158)
40. T. Falk, R.T. Gonzalez, and S.J. Sherman The yin and yang of VEGF and PEDF: multifaceted neurotrophic factors and their potential in the treatment of Parkinson's disease Int. J. Mol. Sci. 11 2010 2875 2900
41. N. Leclerc, A. Vallee, and I.R. Nabi Expression of the AMF/neuroleukin receptor in developing and adult brain cerebellum J. Neurosci. Res. 60 2000 602 612 (Pubitemid 30368276)
42. D. Monard, H.S. Suidan, and C. Nitsch Relevance of the balance between glia-derived nexin and thrombin following lesion in the nervous system Ann. N. Y. Acad. Sci. 674 1992 237 242 (Pubitemid 23077411)
43. R.J. Pasterkamp, J.J. Peschon, M.K. Spriggs, and A.L. Kolodkin Semaphorin 7A promotes axon outgrowth through integrins and MAPKs Nature 424 2003 398 405 (Pubitemid 36917482)
44. C.A. Sprecher, F.J. Grant, G. Grimm, P.J. O'Hara, F. Norris, K. Norris, and D.C. Foster Molecular cloning of the cDNA for a human amyloid precursor protein homolog: evidence for a multigene family Biochemistry 32 1993 4481 4486 (Pubitemid 23143234)
45. H.S. Hoe, H.K. Lee, and D.T. Pak The upside of APP at synapses CNS Neurosci. Ther. 18 2010 47 56
46. T.L. Young-Pearse, A.C. Chen, R. Chang, C. Marquez, and D.J. Selkoe Secreted APP regulates the function of full-length APP in neurite outgrowth through interaction with integrin beta1 Neural Dev. 3 2008 15
47. N. Gakhar-Koppole, P. Hundeshagen, C. Mandl, S.W. Weyer, B. Allinquant, U. Muller, and F. Ciccolini Activity requires soluble amyloid precursor protein alpha to promote neurite outgrowth in neural stem cell-derived neurons via activation of the MAPK pathway Eur. J. Neurosci. 28 2008 871 882
48. A. Vagnoni, M.S. Perkinton, E.H. Gray, P.T. Francis, W. Noble, and C.C. Miller Calsyntenin-1 mediates axonal transport of the amyloid precursor protein and regulates Abeta production Hum. Mol. Genet. 21 2012 2845 2854
49. M. Steuble, B. Gerrits, A. Ludwig, J.M. Mateos, T.M. Diep, M. Tagaya, A. Stephan, P. Schatzle, B. Kunz, P. Streit, and P. Sonderegger Molecular characterization of a trafficking organelle: dissecting the axonal paths of calsyntenin-1 transport vesicles Proteomics 10 2010 3775 3788
50. T. Nuutinen, T. Suuronen, A. Kauppinen, and A. Salminen Clusterin: a forgotten player in Alzheimer's disease Brain Res. Rev. 61 2009 89 104