Decisions on the fly in cellular sensory systems

Proceedings of the National Academy of Sciences of the United States of America

Volumn 110, Issue 39, 2013, Pages

  Siggia, Eric D ^a   Vergassola, Massimo ^a,b,c  

^a ROCKEFELLER UNIVERSITY   (United States)

^b INSTITUT PASTEUR   (France)

^c CNRS   (France)

Author keywords

Sequential probability ratio test; Signal transduction

Indexed keywords

LIGAND; PROTEIN;

ACCURACY; ALGORITHM; ARTICLE; CHEMICAL MODIFICATION; DECISION THEORY; INTRACELLULAR SIGNALING; PRIORITY JOURNAL; PROTEIN PHOSPHORYLATION; SENSORY SYSTEM;

SEQUENTIAL PROBABILITY RATIO TEST; SIGNAL TRANSDUCTION;

ANIMALS; CELLS; MODELS, BIOLOGICAL; RECEPTORS, CELL SURFACE; SIGNAL TRANSDUCTION; TIME FACTORS;

EID: 84884615779     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1314081110     Document Type: Article

References (36)

1. Wald A (1945) Sequential tests of statistical hypotheses. Ann Math Stat 16: 117-186.
2. Wald A (1947) Sequential Analysis (Wiley, New York).
3. DeGroot MH (2004) Optimal Statistical Decisions (Wiley, New York).
4. Parmigiani G, Inoue L (2009) Decision Theory. Principles and Approaches (Wiley, New York).
5. Shiryaev AN (1963) On the detection of disorder in a manufacturing process. I. Theory Probab Appl 8(3):247-265.
6. Shiryaev AN (1963) On the detection of disorder in a manufacturing process. II. Theory Probab Appl 8(4):402-413.
7. Shiryaev AN (1963) On optimum methods in quickest detection problems. Theory Probab Appl 8:22-46.
8. Vergassola M, Villermaux E, Shraiman BI (2007) 'Infotaxis' as a strategy for searching without gradients. Nature 445(7126):406-409.
9. Uchida N, Kepecs A, Mainen ZF (2006) Seeing at a glance, smelling in a whiff: Rapid forms of perceptual decision making. Nat Rev Neurosci 7(6):485-491.
10. Gold JI, Shadlen MN (2007) The neural basis of decision making. Annu Rev Neurosci 30:535-574.
11. Bogacz R, Brown E, Moehlis J, Holmes P, Cohen JD (2006) The physics of optimal decision making: A formal analysis of models of performance in two-alternative forced-choice tasks. Psychol Rev 113(4):700-765.
12. Kobayashi TJ (2010) Implementation of dynamic Bayesian decision making by intracellular kinetics. Phys Rev Lett 104(22):228104.
13. Kobayashi TJ, Kamimura A (2011) Dynamics of intracellular information decoding. Phys Biol 8(5):055007.
14. Ziv E, Nemenman I, Wiggins CH (2007) Optimal signal processing in small stochastic biochemical networks. PLoS ONE 2(10):e1077.
15. Tkacik G, Callan CG, Jr., Bialek W (2008) Information flow and optimization in transcriptional regulation. Proc Natl Acad Sci USA 105(34):12265-12270.
16. Tostevin F, ten Wolde PR (2009) Mutual information between input and output trajectories of biochemical networks. Phys Rev Lett 102(21):218101.
17. Bousso P, Robey EA (2004) Dynamic behavior of T cells and thymocytes in lymphoid organs as revealed by two-photon microscopy. Immunity 21(3):349-355.
18. Krishna S, Maslov S, Sneppen K (2007) UV-induced mutagenesis in Escherichia coli SOS response: A quantitative model. PLoS Comput Biol 3(3):e41.
19. Berg HC (2003) E. Coli in Motion (Springer, New York).
20. Takeda K, et al. (2012) Incoherent feedforward control governs adaptation of activated ras in a eukaryotic chemotaxis pathway. Sci Signal 5(205):ra2.
21. Brivanlou AH, Darnell JE, Jr. (2002) Signal transduction and the control of gene expression. Science 295(5556):813-818.
22. Lemmon MA, Schlessinger J (2010) Cell signaling by receptor tyrosine kinases. Cell 141(7):1117-1134.
23. Cover TN, Thomas JA (2006) Elements of Information Theory (Wiley, New York).
24. Berg HC, Purcell EM (1977) Physics of chemoreception. Biophys J 20(2):193-219.
25. Endres RG,Wingreen NS (2009) Maximum likelihood and the single receptor. Phys Rev Lett 103(15):158101.
26. Aldous D (1989) Probability Approximations via the Poisson Clumping Heuristic (Springer, New York).
27. Goldbeter A, Koshland DE, Jr. (1981) An amplified sensitivity arising from covalent modification in biological systems. Proc Natl Acad Sci USA 78(11): 6840-6844.
28. Cookson NA, et al. (2011) Queueing up for enzymatic processing: Correlated signaling through coupled degradation. Mol Syst Biol 7:561.
29. Behar M, Hoffmann A (2010) Understanding the temporal codes of intra-cellular signals. Curr Opin Genet Dev 20(6):684-693.
30. Hwang TC, Kirk KL (2013) The CFTR ion channel: Gating, regulation, and anion permeation. Cold Spring Harb Perspect Med 3(1):a009498.
31. Hao N, O'Shea EK (2012) Signal-dependent dynamics of transcription factor translocation controls gene expression. Nat Struct Mol Biol 19(1):31-39.
32. Beachy PA, Hymowitz SG, Lazarus RA, Leahy DJ, Siebold C (2010) Interactions between Hedgehog proteins and their binding partners come into view. Genes Dev 24(18):2001-2012.
33. Jin M, et al. (2011) Yeast dynamically modify their environment to achieve better mating efficiency. Sci Signal 4(186):ra54.
34. Chao LH, et al. (2010) Intersubunit capture of regulatory segments is a component of cooperative CaMKII activation. Nat Struct Mol Biol 17(3):264-272.
35. Altan-Bonnet G, Germain RN (2005) Modeling T cell antigen discrimination based on feedback control of digital ERK responses. PLoS Biol 3(11):e356.
36. François P, Voisinne G, Siggia ED, Altan-Bonnet G, Vergassola M (2013) Phenotypic model for early T-cell activation displaying sensitivity, specificity, and antagonism. Proc Natl Acad Sci USA 110(10):E888-E897.