메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

Different patterns of gene structure divergence following gene duplication in Arabidopsis

Author keywords

Arabidopsis; Divergence; Gene structure; Selection; Transposed duplication; Whole genome duplication

Indexed keywords

AMINO ACID; ARABIDOPSIS PROTEIN; NUCLEOTIDE; TRANSPOSON;

EID: 84884600680     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-652     Document Type: Article
Times cited : (76)

References (49)
  • 2
    • 77952476959 scopus 로고    scopus 로고
    • Insights from the comparison of plant genome sequences
    • 10.1146/annurev-arplant-042809-112235, 20441528
    • Paterson AH, Freeling M, Tang H, Wang X. Insights from the comparison of plant genome sequences. Annu Rev Plant Biol 2010, 61:349-372. 10.1146/annurev-arplant-042809-112235, 20441528.
    • (2010) Annu Rev Plant Biol , vol.61 , pp. 349-372
    • Paterson, A.H.1    Freeling, M.2    Tang, H.3    Wang, X.4
  • 3
    • 3142700743 scopus 로고    scopus 로고
    • Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    • 10.1105/tpc.021345, 514152, 15208399
    • Blanc G, Wolfe KH. Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 2004, 16(7):1667-1678. 10.1105/tpc.021345, 514152, 15208399.
    • (2004) Plant Cell , vol.16 , Issue.7 , pp. 1667-1678
    • Blanc, G.1    Wolfe, K.H.2
  • 5
    • 67651039811 scopus 로고    scopus 로고
    • Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition
    • 10.1146/annurev.arplant.043008.092122, 19575588
    • Freeling M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annu Rev Plant Biol 2009, 60:433-453. 10.1146/annurev.arplant.043008.092122, 19575588.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 433-453
    • Freeling, M.1
  • 6
    • 0037468758 scopus 로고    scopus 로고
    • Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    • 10.1038/nature01521, 12660784
    • Bowers JE, Chapman BA, Rong J, Paterson AH. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 2003, 422(6930):433-438. 10.1038/nature01521, 12660784.
    • (2003) Nature , vol.422 , Issue.6930 , pp. 433-438
    • Bowers, J.E.1    Chapman, B.A.2    Rong, J.3    Paterson, A.H.4
  • 7
    • 84861010134 scopus 로고    scopus 로고
    • Genome and gene duplications and gene expression divergence: a view from plants
    • 10.1111/j.1749-6632.2011.06384.x, 22257007
    • Wang Y, Wang X, Paterson AH. Genome and gene duplications and gene expression divergence: a view from plants. Ann N Y Acad Sci 2012, 1256:1-14. 10.1111/j.1749-6632.2011.06384.x, 22257007.
    • (2012) Ann N Y Acad Sci , vol.1256 , pp. 1-14
    • Wang, Y.1    Wang, X.2    Paterson, A.H.3
  • 8
    • 57149120510 scopus 로고    scopus 로고
    • Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
    • 10.1101/gr.081026.108, 2593585, 18836034
    • Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Res 2008, 18(12):1924-1937. 10.1101/gr.081026.108, 2593585, 18836034.
    • (2008) Genome Res , vol.18 , Issue.12 , pp. 1924-1937
    • Freeling, M.1    Lyons, E.2    Pedersen, B.3    Alam, M.4    Ming, R.5    Lisch, D.6
  • 9
    • 33847611887 scopus 로고    scopus 로고
    • Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates
    • Cusack BP, Wolfe KH. Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates. Mol Biol Evol 2007, 24(3):679-686.
    • (2007) Mol Biol Evol , vol.24 , Issue.3 , pp. 679-686
    • Cusack, B.P.1    Wolfe, K.H.2
  • 10
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • 1460895, 10629003
    • Lynch M, Force A. The probability of duplicate gene preservation by subfunctionalization. Genetics 2000, 154(1):459-473. 1460895, 10629003.
    • (2000) Genetics , vol.154 , Issue.1 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 11
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • 10.1126/science.290.5494.1151, 11073452
    • Lynch M, Conery JS. The evolutionary fate and consequences of duplicate genes. Science 2000, 290(5494):1151-1155. 10.1126/science.290.5494.1151, 11073452.
    • (2000) Science , vol.290 , Issue.5494 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 12
    • 33644499450 scopus 로고    scopus 로고
    • Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
    • 10.1073/pnas.0507782103, 1413778, 16467140
    • Chapman BA, Bowers JE, Feltus FA, Paterson AH. Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Proc Natl Acad Sci USA 2006, 103(8):2730-2735. 10.1073/pnas.0507782103, 1413778, 16467140.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.8 , pp. 2730-2735
    • Chapman, B.A.1    Bowers, J.E.2    Feltus, F.A.3    Paterson, A.H.4
  • 13
    • 48249132857 scopus 로고    scopus 로고
    • Pervasive and persistent redundancy among duplicated genes in yeast
    • 10.1371/journal.pgen.1000113, 2440806, 18604285
    • Dean EJ, Davis JC, Davis RW, Petrov DA. Pervasive and persistent redundancy among duplicated genes in yeast. PLoS Genet 2008, 4(7):e1000113. 10.1371/journal.pgen.1000113, 2440806, 18604285.
    • (2008) PLoS Genet , vol.4 , Issue.7
    • Dean, E.J.1    Davis, J.C.2    Davis, R.W.3    Petrov, D.A.4
  • 14
    • 0347033256 scopus 로고    scopus 로고
    • Role of duplicate genes in genetic robustness against null mutations
    • 10.1038/nature01198, 12511954
    • Gu Z, Steinmetz LM, Gu X, Scharfe C, Davis RW, Li WH. Role of duplicate genes in genetic robustness against null mutations. Nature 2003, 421(6918):63-66. 10.1038/nature01198, 12511954.
    • (2003) Nature , vol.421 , Issue.6918 , pp. 63-66
    • Gu, Z.1    Steinmetz, L.M.2    Gu, X.3    Scharfe, C.4    Davis, R.W.5    Li, W.H.6
  • 15
    • 39549122441 scopus 로고    scopus 로고
    • Preferential protection of protein interaction network hubs in yeast: evolved functionality of genetic redundancy
    • 10.1073/pnas.0711043105, 2234123, 18216251
    • Kafri R, Dahan O, Levy J, Pilpel Y. Preferential protection of protein interaction network hubs in yeast: evolved functionality of genetic redundancy. Proc Natl Acad Sci USA 2008, 105(4):1243-1248. 10.1073/pnas.0711043105, 2234123, 18216251.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.4 , pp. 1243-1248
    • Kafri, R.1    Dahan, O.2    Levy, J.3    Pilpel, Y.4
  • 16
    • 33745610025 scopus 로고    scopus 로고
    • Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
    • 10.1101/gr.3681406, 16818725
    • Freeling M, Thomas BC. Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res 2006, 16(7):805-814. 10.1101/gr.3681406, 16818725.
    • (2006) Genome Res , vol.16 , Issue.7 , pp. 805-814
    • Freeling, M.1    Thomas, B.C.2
  • 17
    • 34250632677 scopus 로고    scopus 로고
    • The gene balance hypothesis: from classical genetics to modern genomics
    • 10.1105/tpc.106.049338, 1867330, 17293565
    • Birchler JA, Veitia RA. The gene balance hypothesis: from classical genetics to modern genomics. Plant Cell 2007, 19(2):395-402. 10.1105/tpc.106.049338, 1867330, 17293565.
    • (2007) Plant Cell , vol.19 , Issue.2 , pp. 395-402
    • Birchler, J.A.1    Veitia, R.A.2
  • 18
    • 33750858684 scopus 로고    scopus 로고
    • Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
    • 10.1038/nature05230, 17086204
    • Aury JM, Jaillon O, Duret L, Noel B, Jubin C, Porcel BM, Segurens B, Daubin V, Anthouard V, Aiach N, et al. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 2006, 444(7116):171-178. 10.1038/nature05230, 17086204.
    • (2006) Nature , vol.444 , Issue.7116 , pp. 171-178
    • Aury, J.M.1    Jaillon, O.2    Duret, L.3    Noel, B.4    Jubin, C.5    Porcel, B.M.6    Segurens, B.7    Daubin, V.8    Anthouard, V.9    Aiach, N.10
  • 19
    • 79959858471 scopus 로고    scopus 로고
    • Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints
    • 10.1105/tpc.110.081281, 3123947, 21540436
    • Bekaert M, Edger PP, Pires JC, Conant GC. Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. Plant Cell 2011, 23(5):1719-1728. 10.1105/tpc.110.081281, 3123947, 21540436.
    • (2011) Plant Cell , vol.23 , Issue.5 , pp. 1719-1728
    • Bekaert, M.1    Edger, P.P.2    Pires, J.C.3    Conant, G.C.4
  • 20
    • 33750173564 scopus 로고    scopus 로고
    • Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon
    • 10.1016/j.tig.2006.09.003, 16979781
    • Paterson AH, Chapman BA, Kissinger JC, Bowers JE, Feltus FA, Estill JC. Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon. Trends Genet 2006, 22(11):597-602. 10.1016/j.tig.2006.09.003, 16979781.
    • (2006) Trends Genet , vol.22 , Issue.11 , pp. 597-602
    • Paterson, A.H.1    Chapman, B.A.2    Kissinger, J.C.3    Bowers, J.E.4    Feltus, F.A.5    Estill, J.C.6
  • 21
    • 3142732892 scopus 로고    scopus 로고
    • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
    • 10.1105/tpc.021410, 514153, 15208398
    • Blanc G, Wolfe KH. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 2004, 16(7):1679-1691. 10.1105/tpc.021410, 514153, 15208398.
    • (2004) Plant Cell , vol.16 , Issue.7 , pp. 1679-1691
    • Blanc, G.1    Wolfe, K.H.2
  • 22
    • 33749357831 scopus 로고    scopus 로고
    • Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice
    • 10.1371/journal.pcbi.0020115, 1557586, 16948529
    • Rizzon C, Ponger L, Gaut BS. Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol 2006, 2(9):e115. 10.1371/journal.pcbi.0020115, 1557586, 16948529.
    • (2006) PLoS Comput Biol , vol.2 , Issue.9
    • Rizzon, C.1    Ponger, L.2    Gaut, B.S.3
  • 23
    • 57749085421 scopus 로고    scopus 로고
    • Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
    • 10.1104/pp.108.122457, 2556807, 18715958
    • Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH. Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol 2008, 148(2):993-1003. 10.1104/pp.108.122457, 2556807, 18715958.
    • (2008) Plant Physiol , vol.148 , Issue.2 , pp. 993-1003
    • Hanada, K.1    Zou, C.2    Lehti-Shiu, M.D.3    Shinozaki, K.4    Shiu, S.H.5
  • 24
    • 33646859550 scopus 로고    scopus 로고
    • Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
    • 10.1186/gb-2006-7-2-r13, 1431724, 16507168
    • Casneuf T, De Bodt S, Raes J, Maere S, Van de Peer Y. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biol 2006, 7(2):R13. 10.1186/gb-2006-7-2-r13, 1431724, 16507168.
    • (2006) Genome Biol , vol.7 , Issue.2
    • Casneuf, T.1    De Bodt, S.2    Raes, J.3    Maere, S.4    Van de Peer, Y.5
  • 25
    • 35348820582 scopus 로고    scopus 로고
    • Divergence in expression between duplicated genes in Arabidopsis
    • 10.1093/molbev/msm158, 17670808
    • Ganko EW, Meyers BC, Vision TJ. Divergence in expression between duplicated genes in Arabidopsis. Mol Biol Evol 2007, 24(10):2298-2309. 10.1093/molbev/msm158, 17670808.
    • (2007) Mol Biol Evol , vol.24 , Issue.10 , pp. 2298-2309
    • Ganko, E.W.1    Meyers, B.C.2    Vision, T.J.3
  • 26
    • 82555185713 scopus 로고    scopus 로고
    • Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms
    • 10.1371/journal.pone.0028150, 3229532, 22164235
    • Wang Y, Wang X, Tang H, Tan X, Ficklin SP, Feltus FA, Paterson AH. Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms. PLoS One 2011, 6(12):e28150. 10.1371/journal.pone.0028150, 3229532, 22164235.
    • (2011) PLoS One , vol.6 , Issue.12
    • Wang, Y.1    Wang, X.2    Tang, H.3    Tan, X.4    Ficklin, S.P.5    Feltus, F.A.6    Paterson, A.H.7
  • 27
    • 67649093017 scopus 로고    scopus 로고
    • Expression pattern divergence of duplicated genes in rice
    • Li Z, Zhang H, Ge S, Gu X, Gao G, Luo J. Expression pattern divergence of duplicated genes in rice. BMC Bioinformatics 2009, 6(10):S8.
    • (2009) BMC Bioinformatics , vol.6 , Issue.10
    • Li, Z.1    Zhang, H.2    Ge, S.3    Gu, X.4    Gao, G.5    Luo, J.6
  • 28
    • 38049133600 scopus 로고    scopus 로고
    • All duplicates are not equal: the difference between small-scale and genome duplication
    • 10.1186/gb-2007-8-10-r209, 2246283, 17916239
    • Hakes L, Pinney JW, Lovell SC, Oliver SG, Robertson DL. All duplicates are not equal: the difference between small-scale and genome duplication. Genome Biol 2007, 8(10):R209. 10.1186/gb-2007-8-10-r209, 2246283, 17916239.
    • (2007) Genome Biol , vol.8 , Issue.10
    • Hakes, L.1    Pinney, J.W.2    Lovell, S.C.3    Oliver, S.G.4    Robertson, D.L.5
  • 29
    • 34247847827 scopus 로고    scopus 로고
    • Functional analysis of gene duplications in Saccharomyces cerevisiae
    • 10.1534/genetics.106.064329, 1800624, 17151249
    • Guan Y, Dunham MJ, Troyanskaya OG. Functional analysis of gene duplications in Saccharomyces cerevisiae. Genetics 2007, 175(2):933-943. 10.1534/genetics.106.064329, 1800624, 17151249.
    • (2007) Genetics , vol.175 , Issue.2 , pp. 933-943
    • Guan, Y.1    Dunham, M.J.2    Troyanskaya, O.G.3
  • 30
    • 84857780876 scopus 로고    scopus 로고
    • Evidence for network evolution in an Arabidopsis interactome map
    • 3170756, 21798944, Arabidopsis Interactome Mapping Consortium
    • Arabidopsis Interactome Mapping Consortium Evidence for network evolution in an Arabidopsis interactome map. Science 2011, 333(6042):601-607. 3170756, 21798944, Arabidopsis Interactome Mapping Consortium.
    • (2011) Science , vol.333 , Issue.6042 , pp. 601-607
  • 31
    • 84874196086 scopus 로고    scopus 로고
    • Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice)
    • 10.1111/nph.12137, 23356482
    • Wang Y, Wang X, Lee TH, Mansoor S, Paterson AH. Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression in Oryza sativa (rice). New Phytol 2013, 198(1):274-283. 10.1111/nph.12137, 23356482.
    • (2013) New Phytol , vol.198 , Issue.1 , pp. 274-283
    • Wang, Y.1    Wang, X.2    Lee, T.H.3    Mansoor, S.4    Paterson, A.H.5
  • 32
    • 22144499539 scopus 로고    scopus 로고
    • Functional divergence of proteins through frameshift mutations
    • 10.1016/j.tig.2005.05.013, 15951050
    • Raes J, Van de Peer Y. Functional divergence of proteins through frameshift mutations. Trends Genet 2005, 21(8):428-431. 10.1016/j.tig.2005.05.013, 15951050.
    • (2005) Trends Genet , vol.21 , Issue.8 , pp. 428-431
    • Raes, J.1    Van de Peer, Y.2
  • 33
    • 84866916321 scopus 로고    scopus 로고
    • Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication
    • 10.1093/molbev/mss108, 22490820
    • Guo B, Zou M, Wagner A. Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication. Mol Biol Evol 2012, 29(10):3005-3022. 10.1093/molbev/mss108, 22490820.
    • (2012) Mol Biol Evol , vol.29 , Issue.10 , pp. 3005-3022
    • Guo, B.1    Zou, M.2    Wagner, A.3
  • 34
    • 78650491535 scopus 로고    scopus 로고
    • Impact of indels on the flanking regions in structural domains
    • 10.1093/molbev/msq196, 20671041
    • Zhang Z, Huang J, Wang Z, Wang L, Gao P. Impact of indels on the flanking regions in structural domains. Mol Biol Evol 2011, 28(1):291-301. 10.1093/molbev/msq196, 20671041.
    • (2011) Mol Biol Evol , vol.28 , Issue.1 , pp. 291-301
    • Zhang, Z.1    Huang, J.2    Wang, Z.3    Wang, L.4    Gao, P.5
  • 35
    • 78650800495 scopus 로고    scopus 로고
    • The combined effects of amino acid substitutions and indels on the evolution of structure within protein families
    • 10.1371/journal.pone.0014316, 3001449, 21179197
    • Zhang Z, Wang Y, Wang L, Gao P. The combined effects of amino acid substitutions and indels on the evolution of structure within protein families. PLoS One 2010, 5(12):e14316. 10.1371/journal.pone.0014316, 3001449, 21179197.
    • (2010) PLoS One , vol.5 , Issue.12
    • Zhang, Z.1    Wang, Y.2    Wang, L.3    Gao, P.4
  • 36
    • 84856405887 scopus 로고    scopus 로고
    • Divergence of duplicate genes in exon-intron structure
    • 10.1073/pnas.1109047109, 3268293, 22232673
    • Xu G, Guo C, Shan H, Kong H. Divergence of duplicate genes in exon-intron structure. Proc Natl Acad Sci USA 2012, 109(4):1187-1192. 10.1073/pnas.1109047109, 3268293, 22232673.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.4 , pp. 1187-1192
    • Xu, G.1    Guo, C.2    Shan, H.3    Kong, H.4
  • 37
    • 24344459435 scopus 로고    scopus 로고
    • The evolutionary fate of MULE-mediated duplications of host gene fragments in rice
    • 10.1101/gr.4064205, 1199544, 16140995
    • Juretic N, Hoen DR, Huynh ML, Harrison PM, Bureau TE. The evolutionary fate of MULE-mediated duplications of host gene fragments in rice. Genome Res 2005, 15(9):1292-1297. 10.1101/gr.4064205, 1199544, 16140995.
    • (2005) Genome Res , vol.15 , Issue.9 , pp. 1292-1297
    • Juretic, N.1    Hoen, D.R.2    Huynh, M.L.3    Harrison, P.M.4    Bureau, T.E.5
  • 38
    • 79959408735 scopus 로고    scopus 로고
    • A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes
    • 10.1093/bioinformatics/btr280, 3117337, 21551137
    • Zhang YE, Vibranovski MD, Krinsky BH, Long M. A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics 2011, 27(13):1749-1753. 10.1093/bioinformatics/btr280, 3117337, 21551137.
    • (2011) Bioinformatics , vol.27 , Issue.13 , pp. 1749-1753
    • Zhang, Y.E.1    Vibranovski, M.D.2    Krinsky, B.H.3    Long, M.4
  • 39
    • 0003421005 scopus 로고    scopus 로고
    • Sunderland, Massachusetts: Sinauer Associates
    • Li WH. Molecular Evolution 1997, Sunderland, Massachusetts: Sinauer Associates.
    • (1997) Molecular Evolution
    • Li, W.H.1
  • 40
    • 84856480832 scopus 로고    scopus 로고
    • Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids
    • 10.1105/tpc.111.093567, 3269863, 22180627
    • Woodhouse MR, Tang H, Freeling M. Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. Plant Cell 2011, 23(12):4241-4253. 10.1105/tpc.111.093567, 3269863, 22180627.
    • (2011) Plant Cell , vol.23 , Issue.12 , pp. 4241-4253
    • Woodhouse, M.R.1    Tang, H.2    Freeling, M.3
  • 41
    • 84878280657 scopus 로고    scopus 로고
    • MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans
    • 10.1093/bioinformatics/btt150, 23539305
    • Wang Y, Li J, Paterson AH. MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans. Bioinformatics 2013, 29(11):1458-1460. 10.1093/bioinformatics/btt150, 23539305.
    • (2013) Bioinformatics , vol.29 , Issue.11 , pp. 1458-1460
    • Wang, Y.1    Li, J.2    Paterson, A.H.3
  • 42
    • 76349090209 scopus 로고    scopus 로고
    • Divergence of exonic splicing elements after gene duplication and the impact on gene structures
    • 10.1186/gb-2009-10-11-r120, 3091315, 19883501
    • Zhang Z, Zhou L, Wang P, Liu Y, Chen X, Hu L, Kong X. Divergence of exonic splicing elements after gene duplication and the impact on gene structures. Genome Biol 2009, 10(11):R120. 10.1186/gb-2009-10-11-r120, 3091315, 19883501.
    • (2009) Genome Biol , vol.10 , Issue.11
    • Zhang, Z.1    Zhou, L.2    Wang, P.3    Liu, Y.4    Chen, X.5    Hu, L.6    Kong, X.7
  • 43
    • 33748029468 scopus 로고    scopus 로고
    • High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes
    • 10.1093/molbev/msl017, 16720694
    • Knowles DG, McLysaght A. High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes. Mol Biol Evol 2006, 23(8):1548-1557. 10.1093/molbev/msl017, 16720694.
    • (2006) Mol Biol Evol , vol.23 , Issue.8 , pp. 1548-1557
    • Knowles, D.G.1    McLysaght, A.2
  • 44
    • 33745617700 scopus 로고    scopus 로고
    • Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
    • 10.1101/gr.4708406, 1484460, 16760422
    • Thomas BC, Pedersen B, Freeling M. Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes. Genome Res 2006, 16(7):934-946. 10.1101/gr.4708406, 1484460, 16760422.
    • (2006) Genome Res , vol.16 , Issue.7 , pp. 934-946
    • Thomas, B.C.1    Pedersen, B.2    Freeling, M.3
  • 45
    • 84876530550 scopus 로고    scopus 로고
    • Locally duplicated ohnologs evolve faster than nonlocally duplicated ohnologs in Arabidopsis and rice
    • 10.1093/gbe/evt016, 3590777, 23362157
    • Wang Y. Locally duplicated ohnologs evolve faster than nonlocally duplicated ohnologs in Arabidopsis and rice. Genome Biol Evol 2013, 5(2):362-369. 10.1093/gbe/evt016, 3590777, 23362157.
    • (2013) Genome Biol Evol , vol.5 , Issue.2 , pp. 362-369
    • Wang, Y.1
  • 47
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 10.1093/nar/22.22.4673, 308517, 7984417
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22(22):4673-4680. 10.1093/nar/22.22.4673, 308517, 7984417.
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 48
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • 10.1093/oxfordjournals.molbev.a026236, 10666704
    • Yang Z, Nielsen R. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol Biol Evol 2000, 17(1):32-43. 10.1093/oxfordjournals.molbev.a026236, 10666704.
    • (2000) Mol Biol Evol , vol.17 , Issue.1 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2
  • 49
    • 82955237384 scopus 로고    scopus 로고
    • Evidence of function for conserved noncoding sequences in Arabidopsis thaliana
    • 10.1111/j.1469-8137.2011.03916.x, 21955124
    • Spangler JB, Subramaniam S, Freeling M, Feltus FA. Evidence of function for conserved noncoding sequences in Arabidopsis thaliana. New Phytol 2012, 193(1):241-252. 10.1111/j.1469-8137.2011.03916.x, 21955124.
    • (2012) New Phytol , vol.193 , Issue.1 , pp. 241-252
    • Spangler, J.B.1    Subramaniam, S.2    Freeling, M.3    Feltus, F.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.