-
1
-
-
1542334001
-
Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing
-
Ahn S.H., Kim M., Buratowski S. Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing. Mol. Cell 2004, 13:67-76.
-
(2004)
Mol. Cell
, vol.13
, pp. 67-76
-
-
Ahn, S.H.1
Kim, M.2
Buratowski, S.3
-
2
-
-
65549156025
-
TFIIH kinase places bivalent marks on the carboxy-terminal domain of RNA polymerase II
-
Akhtar M.S., Heidemann M., Tietjen J.R., Zhang D.W., Chapman R.D., Eick D., Ansari A.Z. TFIIH kinase places bivalent marks on the carboxy-terminal domain of RNA polymerase II. Mol. Cell 2009, 34:387-393.
-
(2009)
Mol. Cell
, vol.34
, pp. 387-393
-
-
Akhtar, M.S.1
Heidemann, M.2
Tietjen, J.R.3
Zhang, D.W.4
Chapman, R.D.5
Eick, D.6
Ansari, A.Z.7
-
4
-
-
84855897301
-
TFIIH is an elongation factor of RNA polymerase I
-
Assfalg R., Lebedev A., Gonzalez O.G., Schelling A., Koch S., Iben S. TFIIH is an elongation factor of RNA polymerase I. Nucleic Acids Res. 2012, 40:650-659.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 650-659
-
-
Assfalg, R.1
Lebedev, A.2
Gonzalez, O.G.3
Schelling, A.4
Koch, S.5
Iben, S.6
-
5
-
-
77958587420
-
CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1
-
Bartkowiak B., Liu P., Phatnani H.P., Fuda N.J., Cooper J.J., Price D.H., Adelman K., Lis J.T., Greenleaf A.L. CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1. Genes Dev. 2010, 24:2303-2316.
-
(2010)
Genes Dev.
, vol.24
, pp. 2303-2316
-
-
Bartkowiak, B.1
Liu, P.2
Phatnani, H.P.3
Fuda, N.J.4
Cooper, J.J.5
Price, D.H.6
Adelman, K.7
Lis, J.T.8
Greenleaf, A.L.9
-
6
-
-
84856273602
-
A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes
-
Bataille A.R., Jeronimo C., Jacques P.E., Laramée L., Fortin M.E., Forest A., Bergeron M., Hanes S.D., Robert F. A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes. Mol. Cell 2012, 45:158-170.
-
(2012)
Mol. Cell
, vol.45
, pp. 158-170
-
-
Bataille, A.R.1
Jeronimo, C.2
Jacques, P.E.3
Laramée, L.4
Fortin, M.E.5
Forest, A.6
Bergeron, M.7
Hanes, S.D.8
Robert, F.9
-
7
-
-
70449641057
-
Progression through the RNA polymerase II CTD cycle
-
Buratowski S. Progression through the RNA polymerase II CTD cycle. Mol. Cell 2009, 36:541-546.
-
(2009)
Mol. Cell
, vol.36
, pp. 541-546
-
-
Buratowski, S.1
-
8
-
-
0037832543
-
Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription
-
Bushnell D.A., Kornberg R.D. Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription. Proc. Natl. Acad. Sci. USA 2003, 100:6969-6973.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6969-6973
-
-
Bushnell, D.A.1
Kornberg, R.D.2
-
9
-
-
0031453408
-
MRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain
-
Cho E.J., Takagi T., Moore C.R., Buratowski S. mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain. Genes Dev. 1997, 11:3319-3326.
-
(1997)
Genes Dev.
, vol.11
, pp. 3319-3326
-
-
Cho, E.J.1
Takagi, T.2
Moore, C.R.3
Buratowski, S.4
-
10
-
-
0035893314
-
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain
-
Cho E.J., Kobor M.S., Kim M., Greenblatt J., Buratowski S. Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain. Genes Dev. 2001, 15:3319-3329.
-
(2001)
Genes Dev.
, vol.15
, pp. 3319-3329
-
-
Cho, E.J.1
Kobor, M.S.2
Kim, M.3
Greenblatt, J.4
Buratowski, S.5
-
11
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution
-
Cramer P., Bushnell D.A., Kornberg R.D. Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science 2001, 292:1863-1876.
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
12
-
-
48249103199
-
Structure of eukaryotic RNA polymerases
-
Cramer P., Armache K.J., Baumli S., Benkert S., Brueckner F., Buchen C., Damsma G.E., Dengl S., Geiger S.R., Jasiak A.J., et al. Structure of eukaryotic RNA polymerases. Ann. Rev. Biophys. 2008, 37:337-352.
-
(2008)
Ann. Rev. Biophys.
, vol.37
, pp. 337-352
-
-
Cramer, P.1
Armache, K.J.2
Baumli, S.3
Benkert, S.4
Brueckner, F.5
Buchen, C.6
Damsma, G.E.7
Dengl, S.8
Geiger, S.R.9
Jasiak, A.J.10
-
13
-
-
84864293829
-
Serine-7 but not serine-5 phosphorylation primes RNA polymerase II CTD for P-TEFb recognition
-
Czudnochowski N., Bosken C.A., Geyer M. Serine-7 but not serine-5 phosphorylation primes RNA polymerase II CTD for P-TEFb recognition. Nat. Comm. 2012, 3:842.
-
(2012)
Nat. Comm.
, vol.3
, pp. 842
-
-
Czudnochowski, N.1
Bosken, C.A.2
Geyer, M.3
-
14
-
-
84872388407
-
The eukaryotic transcriptional machinery regulates mRNA translation and decay in the cytoplasm
-
Dahan N., Choder M. The eukaryotic transcriptional machinery regulates mRNA translation and decay in the cytoplasm. Biochim. Biophys. Acta 2013, 1829:169-173.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 169-173
-
-
Dahan, N.1
Choder, M.2
-
15
-
-
84855880038
-
Ser7 phosphorylation of the CTD recruits the RPAP2 Ser5 phosphatase to snRNA genes
-
Egloff S., Zaborowska J., Laitem C., Kiss T., Murphy S. Ser7 phosphorylation of the CTD recruits the RPAP2 Ser5 phosphatase to snRNA genes. Mol. Cell 2012, 45:111-122.
-
(2012)
Mol. Cell
, vol.45
, pp. 111-122
-
-
Egloff, S.1
Zaborowska, J.2
Laitem, C.3
Kiss, T.4
Murphy, S.5
-
16
-
-
70350442978
-
TFIIH-associated Cdk7 kinase functions in phosphorylation of C-terminal domain Ser7 residues, promoter-proximal pausing, and termination by RNA polymerase II
-
Glover-Cutter K., Larochelle S., Erickson B., Zhang C., Shokat K., Fisher R.P., Bentley D.L. TFIIH-associated Cdk7 kinase functions in phosphorylation of C-terminal domain Ser7 residues, promoter-proximal pausing, and termination by RNA polymerase II. Mol. Cell. Biol. 2009, 29:5455-5464.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 5455-5464
-
-
Glover-Cutter, K.1
Larochelle, S.2
Erickson, B.3
Zhang, C.4
Shokat, K.5
Fisher, R.P.6
Bentley, D.L.7
-
17
-
-
0032110627
-
Temporal regulation of RNA polymerase II by Srb10 and Kin28 cyclin-dependent kinases
-
Hengartner C.J., Myer V.E., Liao S.M., Wilson C.J., Koh S.S., Young R.A. Temporal regulation of RNA polymerase II by Srb10 and Kin28 cyclin-dependent kinases. Mol. Cell 1998, 2:43-53.
-
(1998)
Mol. Cell
, vol.2
, pp. 43-53
-
-
Hengartner, C.J.1
Myer, V.E.2
Liao, S.M.3
Wilson, C.J.4
Koh, S.S.5
Young, R.A.6
-
18
-
-
0037013144
-
TFIIH plays an essential role in RNA polymerase I transcription
-
Iben S., Tschochner H., Bier M., Hoogstraten D., Hozák P., Egly J.M., Grummt I. TFIIH plays an essential role in RNA polymerase I transcription. Cell 2002, 109:297-306.
-
(2002)
Cell
, vol.109
, pp. 297-306
-
-
Iben, S.1
Tschochner, H.2
Bier, M.3
Hoogstraten, D.4
Hozák, P.5
Egly, J.M.6
Grummt, I.7
-
19
-
-
2942528748
-
C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats
-
Jones J.C., Phatnani H.P., Haystead T.A., MacDonald J.A., Alam S.M., Greenleaf A.L. C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats. J.Biol. Chem. 2004, 279:24957-24964.
-
(2004)
J.Biol. Chem.
, vol.279
, pp. 24957-24964
-
-
Jones, J.C.1
Phatnani, H.P.2
Haystead, T.A.3
MacDonald, J.A.4
Alam, S.M.5
Greenleaf, A.L.6
-
20
-
-
0141557763
-
Bur1 kinase is required for efficient transcription elongation by RNA polymerase II
-
Keogh M.C., Podolny V., Buratowski S. Bur1 kinase is required for efficient transcription elongation by RNA polymerase II. Mol. Cell. Biol. 2003, 23:7005-7018.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 7005-7018
-
-
Keogh, M.C.1
Podolny, V.2
Buratowski, S.3
-
21
-
-
9644310314
-
The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II
-
Kim M., Krogan N.J., Vasiljeva L., Rando O.J., Nedea E., Greenblatt J.F., Buratowski S. The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II. Nature 2004, 432:517-522.
-
(2004)
Nature
, vol.432
, pp. 517-522
-
-
Kim, M.1
Krogan, N.J.2
Vasiljeva, L.3
Rando, O.J.4
Nedea, E.5
Greenblatt, J.F.6
Buratowski, S.7
-
22
-
-
70350389837
-
Phosphorylation of the yeast Rpb1 C-terminal domain at serines 2, 5, and 7
-
Kim M., Suh H., Cho E.J., Buratowski S. Phosphorylation of the yeast Rpb1 C-terminal domain at serines 2, 5, and 7. J.Biol. Chem. 2009, 284:26421-26426.
-
(2009)
J.Biol. Chem.
, vol.284
, pp. 26421-26426
-
-
Kim, M.1
Suh, H.2
Cho, E.J.3
Buratowski, S.4
-
23
-
-
77957786100
-
Gene-specific RNA polymerase II phosphorylation and the CTD code
-
Kim H., Erickson B., Luo W., Seward D., Graber J.H., Pollock D.D., Megee P.C., Bentley D.L. Gene-specific RNA polymerase II phosphorylation and the CTD code. Nat. Struct. Mol. Biol. 2010, 17:1279-1286.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1279-1286
-
-
Kim, H.1
Erickson, B.2
Luo, W.3
Seward, D.4
Graber, J.H.5
Pollock, D.D.6
Megee, P.C.7
Bentley, D.L.8
-
24
-
-
0034307008
-
Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription
-
Komarnitsky P., Cho E.J., Buratowski S. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription. Genes Dev. 2000, 14:2452-2460.
-
(2000)
Genes Dev.
, vol.14
, pp. 2452-2460
-
-
Komarnitsky, P.1
Cho, E.J.2
Buratowski, S.3
-
25
-
-
0037524702
-
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation
-
Krogan N.J., Dover J., Wood A., Schneider J., Heidt J., Boateng M.A., Dean K., Ryan O.W., Golshani A., Johnston M., et al. The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation. Mol. Cell 2003, 11:721-729.
-
(2003)
Mol. Cell
, vol.11
, pp. 721-729
-
-
Krogan, N.J.1
Dover, J.2
Wood, A.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Dean, K.7
Ryan, O.W.8
Golshani, A.9
Johnston, M.10
-
26
-
-
77957766550
-
Uniform transitions of the general RNA polymerase II transcription complex
-
Mayer A., Lidschreiber M., Siebert M., Leike K., Söding J., Cramer P. Uniform transitions of the general RNA polymerase II transcription complex. Nat. Struct. Mol. Biol. 2010, 17:1272-1278.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1272-1278
-
-
Mayer, A.1
Lidschreiber, M.2
Siebert, M.3
Leike, K.4
Söding, J.5
Cramer, P.6
-
27
-
-
15644372864
-
5'-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II
-
McCracken S., Fong N., Rosonina E., Yankulov K., Brothers G., Siderovski D., Hessel A., Foster S., Shuman S., Bentley D.L. 5'-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II. Genes Dev. 1997, 11:3306-3318.
-
(1997)
Genes Dev.
, vol.11
, pp. 3306-3318
-
-
McCracken, S.1
Fong, N.2
Rosonina, E.3
Yankulov, K.4
Brothers, G.5
Siderovski, D.6
Hessel, A.7
Foster, S.8
Shuman, S.9
Bentley, D.L.10
-
28
-
-
3142615882
-
Recognition of RNA polymerase IIcarboxy-terminal domain by 3'-RNA-processing factors
-
Meinhart A., Cramer P. Recognition of RNA polymerase IIcarboxy-terminal domain by 3'-RNA-processing factors. Nature 2004, 430:223-226.
-
(2004)
Nature
, vol.430
, pp. 223-226
-
-
Meinhart, A.1
Cramer, P.2
-
29
-
-
0344022572
-
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
Ng H.H., Robert F., Young R.A., Struhl K. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell 2003, 11:709-719.
-
(2003)
Mol. Cell
, vol.11
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
30
-
-
0023651270
-
Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II
-
Nonet M., Sweetser D., Young R.A. Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II. Cell 1987, 50:909-915.
-
(1987)
Cell
, vol.50
, pp. 909-915
-
-
Nonet, M.1
Sweetser, D.2
Young, R.A.3
-
31
-
-
0035971082
-
Dissociable Rpb4-Rpb7 subassembly of rna polymerase II binds to single-strand nucleic acid and mediates a post-recruitment step in transcription initiation
-
Orlicky S.M., Tran P.T., Sayre M.H., Edwards A.M. Dissociable Rpb4-Rpb7 subassembly of rna polymerase II binds to single-strand nucleic acid and mediates a post-recruitment step in transcription initiation. J.Biol. Chem. 2001, 276:10097-10102.
-
(2001)
J.Biol. Chem.
, vol.276
, pp. 10097-10102
-
-
Orlicky, S.M.1
Tran, P.T.2
Sayre, M.H.3
Edwards, A.M.4
-
32
-
-
0032548846
-
Growth-related changesin phosphorylation of yeast RNA polymerase II
-
Patturajan M., Schulte R.J., Sefton B.M., Berezney R., Vincent M., Bensaude O., Warren S.L., Corden J.L. Growth-related changesin phosphorylation of yeast RNA polymerase II. J.Biol. Chem. 1998, 273:4689-4694.
-
(1998)
J.Biol. Chem.
, vol.273
, pp. 4689-4694
-
-
Patturajan, M.1
Schulte, R.J.2
Sefton, B.M.3
Berezney, R.4
Vincent, M.5
Bensaude, O.6
Warren, S.L.7
Corden, J.L.8
-
33
-
-
62549104640
-
Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters
-
Qiu H., Hu C., Hinnebusch A.G. Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters. Mol. Cell 2009, 33:752-762.
-
(2009)
Mol. Cell
, vol.33
, pp. 752-762
-
-
Qiu, H.1
Hu, C.2
Hinnebusch, A.G.3
-
34
-
-
0033986862
-
Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II
-
Rodriguez C.R., Cho E.J., Keogh M.C., Moore C.L., Greenleaf A.L., Buratowski S. Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II. Mol. Cell. Biol. 2000, 20:104-112.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 104-112
-
-
Rodriguez, C.R.1
Cho, E.J.2
Keogh, M.C.3
Moore, C.L.4
Greenleaf, A.L.5
Buratowski, S.6
-
35
-
-
0034307172
-
Dynamic association of capping enzymes with transcribing RNA polymerase II
-
Schroeder S.C., Schwer B., Shuman S., Bentley D. Dynamic association of capping enzymes with transcribing RNA polymerase II. Genes Dev. 2000, 14:2435-2440.
-
(2000)
Genes Dev.
, vol.14
, pp. 2435-2440
-
-
Schroeder, S.C.1
Schwer, B.2
Shuman, S.3
Bentley, D.4
-
36
-
-
67249164174
-
Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution
-
Spåhr H., Calero G., Bushnell D.A., Kornberg R.D. Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution. Proc. Natl. Acad. Sci. USA 2009, 106:9185-9190.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 9185-9190
-
-
Spåhr, H.1
Calero, G.2
Bushnell, D.A.3
Kornberg, R.D.4
-
37
-
-
77958608570
-
A dual interface determines the recognition of RNA polymerase II by RNA capping enzyme
-
Suh M.H., Meyer P.A., Gu M., Ye P., Zhang M., Kaplan C.D., Lima C.D., Fu J. A dual interface determines the recognition of RNA polymerase II by RNA capping enzyme. J.Biol. Chem. 2010, 285:34027-34038.
-
(2010)
J.Biol. Chem.
, vol.285
, pp. 34027-34038
-
-
Suh, M.H.1
Meyer, P.A.2
Gu, M.3
Ye, P.4
Zhang, M.5
Kaplan, C.D.6
Lima, C.D.7
Fu, J.8
-
38
-
-
0037405790
-
Loss of the Rpb4/Rpb7 subcomplex in a mutant form of the Rpb6 subunit shared by RNA polymerases I, II, and III
-
Tan Q., Prysak M.H., Woychik N.A. Loss of the Rpb4/Rpb7 subcomplex in a mutant form of the Rpb6 subunit shared by RNA polymerases I, II, and III. Mol. Cell. Biol. 2003, 23:3329-3338.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 3329-3338
-
-
Tan, Q.1
Prysak, M.H.2
Woychik, N.A.3
-
39
-
-
77956344274
-
Chemical-genomic dissection of the CTD code
-
Tietjen J.R., Zhang D.W., Rodríguez-Molina J.B., White B.E., Akhtar M.S., Heidemann M., Li X., Chapman R.D., Shokat K., Keles S., et al. Chemical-genomic dissection of the CTD code. Nat. Struct. Mol. Biol. 2010, 17:1154-1161.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1154-1161
-
-
Tietjen, J.R.1
Zhang, D.W.2
Rodríguez-Molina, J.B.3
White, B.E.4
Akhtar, M.S.5
Heidemann, M.6
Li, X.7
Chapman, R.D.8
Shokat, K.9
Keles, S.10
-
40
-
-
49449110180
-
The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain
-
Vasiljeva L., Kim M., Mutschler H., Buratowski S., Meinhart A. The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain. Nat. Struct. Mol. Biol. 2008, 15:795-804.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 795-804
-
-
Vasiljeva, L.1
Kim, M.2
Mutschler, H.3
Buratowski, S.4
Meinhart, A.5
-
41
-
-
0029037999
-
Construction and analysis of yeast RNA polymerase II CTD deletion and substitution mutations
-
West M.L., Corden J.L. Construction and analysis of yeast RNA polymerase II CTD deletion and substitution mutations. Genetics 1995, 140:1223-1233.
-
(1995)
Genetics
, vol.140
, pp. 1223-1233
-
-
West, M.L.1
Corden, J.L.2
|