Identification of aberrant microRNA expression pattern in pediatric gliomas by microarray

Diagnostic Pathology

Volumn 8, Issue 1, 2013, Pages

  Liu, Fatao ^a   Xiong, Yuyu ^b   Zhao, Yang ^b   Tao, Liming ^a   Zhang, Zhou ^a   Zhang, Hong ^c   Liu, Yun ^c,d   Feng, Guoyin ^b   Li, Baojie ^b   He, Lin ^a,b,c   Ma, Jie ^b   Qin, Shengying ^b   Yang, Yifeng ^a  

^a Shanghai Jiao Tong University Affiliated Sixth People s Hospital   (China)

^b SHANGHAI JIAO TONG UNIVERSITY   (China)

^c FUDAN UNIVERSITY   (China)

^d FUDAN UNIVERSITY   (China)

Author keywords

Expression; Microarray; MicroRNA; Pediatric brain tumor; Pediatric gliomas

Indexed keywords

MICRORNA; TUMOR MARKER;

AGE; APOPTOSIS; ARTICLE; BRAIN TUMOR; CASE CONTROL STUDY; CHILD; DNA MICROARRAY; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE ONTOLOGY; GENE REGULATORY NETWORK; GENETIC DATABASE; GENETIC PREDISPOSITION; GENETICS; GLIOMA; HUMAN; INFANT; MALE; METHODOLOGY; PATHOLOGY; PHENOTYPE; PRESCHOOL CHILD; REAL TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SIGNAL TRANSDUCTION;

AGE FACTORS; APOPTOSIS; BRAIN NEOPLASMS; CASE-CONTROL STUDIES; CHILD; CHILD, PRESCHOOL; DATABASES, GENETIC; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, NEOPLASTIC; GENE ONTOLOGY; GENE REGULATORY NETWORKS; GENETIC PREDISPOSITION TO DISEASE; GLIOMA; HUMANS; INFANT; MALE; MICRORNAS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; REAL-TIME POLYMERASE CHAIN REACTION; REPRODUCIBILITY OF RESULTS; SIGNAL TRANSDUCTION; TUMOR MARKERS, BIOLOGICAL;

EID: 84884559285     PISSN: None     EISSN: 17461596     Source Type: Journal    
DOI: 10.1186/1746-1596-8-158     Document Type: Article

References (33)

1. Turner CD, Rey-Casserly C, Liptak CC, Chordas C. Late effects of therapy for pediatric brain tumor survivors. J Child Neurol 2009, 24:1455-1463. 10.1177/0883073809341709, 19841433.
2. Kaatsch P, Rickert CH, Kuhl J, Schuz J, Michaelis J. Population-based epidemiologic data on brain tumors in German children. Cancer 2001, 92:3155-3164. 10.1002/1097-0142(20011215)92:12<3155::AID-CNCR10158>3.0.CO;2-C, 11753995.
3. Pfister S, Hartmann C, Korshunov A. Histology and molecular pathology of pediatric brain tumors. J Child Neurol 2009, 24:1375-1386. 10.1177/0883073809339213, 19841426.
4. Achanta P, Sedora Roman NI, Quinones-Hinojosa A. Gliomagenesis and the use of neural stem cells in brain tumor treatment. Anticancer Agents Med Chem 2010, 10:121-130. 10.2174/187152010790909290, 2981502, 20184546.
5. Peng Y, Dai Y, Hitchcock C, Yang X, Kassis ES, Liu L, Luo Z, Sun HL, Cui R, Wei H, et al. Insulin growth factor signaling is regulated by microRNA-486, an underexpressed microRNA in lung cancer. Proc Natl Acad Sci USA 2013, in press.
6. Shen SN, Wang LF, Jia YF, Hao YQ, Zhang L, Wang H. Upregulation of microRNA-224 is associated with aggressive progression and poor prognosis in human cervical cancer. Diagn Pathol 2013, 8:69. 10.1186/1746-1596-8-69, 3661379, 23631806.
7. Wang S, Xue S, Dai Y, Yang J, Chen Z, Fang X, Zhou W, Wu W, Li Q. Reduced expression of microRNA-100 confers unfavorable prognosis in patients with bladder cancer. Diagn Pathol 2012, 7:159. 10.1186/1746-1596-7-159, 3539897, 23173870.
8. Luzna P, Gregar J, Uberall I, Radova L, Prochazka V, Ehrmann J. Changes of microRNAs-192, 196a and 203 correlate with Barrett's esophagus diagnosis and its progression compared to normal healthy individuals. Diagn Pathol 2011, 6:114. 10.1186/1746-1596-6-114, 3268741, 22094011.
9. Mao ZG, He DS, Zhou J, Yao B, Xiao WW, Chen CH, Zhu YH, Wang HJ. Differential expression of microRNAs in GH-secreting pituitary adenomas. Diagn Pathol 2010, 5:79. 10.1186/1746-1596-5-79, 3017030, 21138567.
10. Palumbo S, Miracco C, Pirtoli L, Comincini S. Emerging roles of microRNA in modulating cell-death processes in malignant glioma. J Cell Physiol 2013, in press.
11. Chan JA, Krichevsky AM, Kosik KS. MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells. Cancer Res 2005, 65:6029-6033. 10.1158/0008-5472.CAN-05-0137, 16024602.
12. Ciafre SA, Galardi S, Mangiola A, Ferracin M, Liu CG, Sabatino G, Negrini M, Maira G, Croce CM, Farace MG. Extensive modulation of a set of microRNAs in primary glioblastoma. Biochem Biophys Res Commun 2005, 334:1351-1358. 10.1016/j.bbrc.2005.07.030, 16039986.
13. Bottoni A, Piccin D, Tagliati F, Luchin A, Zatelli MC, degli Uberti EC. miR-15a and miR-16-1 down-regulation in pituitary adenomas. J Cell Physiol 2005, 204:280-285. 10.1002/jcp.20282, 15648093.
14. Li G, Zhang Z, Tu Y, Jin T, Liang H, Cui G, He S, Gao G. Correlation of microRNA-372 upregulation with poor prognosis in human glioma. Diagn Pathol 2013, 8:1. 10.1186/1746-1596-8-1, 3551676, 23298385.
15. Nicoloso MS, Calin GA. MicroRNA involvement in brain tumors: from bench to bedside. Brain Pathol 2008, 18:122-129. 10.1111/j.1750-3639.2007.00119.x, 18226107.
16. Bilban M, Buehler LK, Head S, Desoye G, Quaranta V. Normalizing DNA microarray data. Curr Issues Mol Biol 2002, 4:57-64.
17. Hwang MS, Yu N, Stinson SY, Yue P, Newman RJ, Allan BB, Dornan D. miR-221/222 targets adiponectin receptor 1 to promote the epithelial-to-mesenchymal transition in breast cancer. PloS one 2013, 8:e66502. 10.1371/journal.pone.0066502, 3679042, 23776679.
18. Walter BA, Valera VA, Pinto PA, Merino MJ. Comprehensive microRNA Profiling of Prostate Cancer. J Cancer Educ 2013, 4:350-357.
19. Li BL, Lu W, Lu C, Qu JJ, Yang TT, Yan Q, Wan XP. CpG island hypermethylation-associated silencing of microRNAs promotes human endometrial cancer. Cancer Cell Int 2013, 13:44. 10.1186/1475-2867-13-44, 3661352, 23680357.
20. Wang Z, Zhang H, He L, Dong W, Li J, Shan Z, Teng W. Association between the expression of four upregulated miRNAs and extrathyroidal invasion in papillary thyroid carcinoma. OncoTargets Ther 2013, 6:281-287.
21. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, et al. Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 2005, 33:e179. 10.1093/nar/gni178, 1292995, 16314309.
22. Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25:402-408. 10.1006/meth.2001.1262, 11846609.
23. Chen L, Zhang A, Li Y, Zhang K, Han L, Du W, Yan W, Li R, Wang Y, Wang K, et al. MiR-24 regulates the proliferation and invasion of glioma by ST7L via beta-catenin/Tcf-4 signaling. Cancer Lett 2013, 329:174-180. 10.1016/j.canlet.2012.10.025, 23142218.
24. Xu W, Liu M, Peng X, Zhou P, Zhou J, Xu K, Xu H, Jiang S. miR-24-3p and miR-27a-3p promote cell proliferation in glioma cells via cooperative regulation of MXI1. Int J Oncol 2013, 42:757-766.
25. Ho CY, Bar E, Giannini C, Marchionni L, Karajannis MA, Zagzag D, Gutmann DH, Eberhart CG, Rodriguez FJ. MicroRNA profiling in pediatric pilocytic astrocytoma reveals biologically relevant targets, including PBX3, NFIB, and METAP2. Neuro-oncology 2013, 15:69-82. 10.1093/neuonc/nos269, 23161775.
26. Li Q, Shen K, Zhao Y, He X, Ma C, Wang L, Wang B, Liu J, Ma J. MicroRNA-222 promotes tumorigenesis via targeting DKK2 and activating the Wnt/beta-catenin signaling pathway. FEBS Lett 2013, 587:1742-1748. 10.1016/j.febslet.2013.04.002, 23587485.
27. Ying Z, Li Y, Wu J, Zhu X, Yang Y, Tian H, Li W, Hu B, Cheng SY, Li M. Loss of miR-204 expression enhances glioma migration and stem cell-like phenotype. Cancer Res 2013, 73:990-999. 10.1158/0008-5472.CAN-12-2895, 23204229.
28. Tu Y, Gao X, Li G, Fu H, Cui D, Liu H, Jin W, Zhang Y. MicroRNA-218 Inhibits Glioma Invasion, Migration, Proliferation and Cancer Stem-like Cell Self-renewal by Targeting the Polycomb Group Gene Bmi1. Cancer Res 2013, in press.
29. Shi ZM, Wang J, Yan Z, You YP, Li CY, Qian X, Yin Y, Zhao P, Wang YY, Wang XF, et al. MiR-128 inhibits tumor growth and angiogenesis by targeting p70S6K1. PloS One 2012, 7:e32709. 10.1371/journal.pone.0032709, 3307714, 22442669.
30. Kaminska B, Kocyk M, Kijewska M. TGF beta signaling and its role in glioma pathogenesis. Adv Exp Med Biol 2013, 986:171-187. 10.1007/978-94-007-4719-7_9, 22879069.
31. Gong A, Huang S. FoxM1 and Wnt/beta-catenin signaling in glioma stem cells. Cancer Res 2012, 72:5658-5662. 10.1158/0008-5472.CAN-12-0953, 23139209.
32. Stockhausen MT, Kristoffersen K, Poulsen HS. Notch signaling and brain tumors. Adv Exp Med Biol 2012, 727:289-304. 10.1007/978-1-4614-0899-4_22, 22399356.
33. Xu P, Zhang A, Jiang R, Qiu M, Kang C, Jia Z, Wang G, Han L, Fan X, Pu P. The different role of Notch1 and Notch2 in astrocytic gliomas. PloS One 2013, 8:e53654. 10.1371/journal.pone.0053654, 3549979, 23349727.