메뉴 건너뛰기




Volumn 69, Issue 3, 2013, Pages 462-468

Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics

Author keywords

Collodictyon; Mitochondrial sequences; Phylogenomics; Thecamonas; Transcriptome

Indexed keywords

MITOCHONDRIAL PROTEIN; TRANSCRIPTOME;

EID: 84884543801     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2013.08.005     Document Type: Article
Times cited : (15)

References (36)
  • 2
    • 84862676601 scopus 로고    scopus 로고
    • Aggregative multicellularity evolved independently in the eukaryotic supergroup Rhizaria
    • Brown M.W., Kolisko M., Silberman J.D., Roger A.J. Aggregative multicellularity evolved independently in the eukaryotic supergroup Rhizaria. Curr. Biol. 2012, 22:1123-1127.
    • (2012) Curr. Biol. , vol.22 , pp. 1123-1127
    • Brown, M.W.1    Kolisko, M.2    Silberman, J.D.3    Roger, A.J.4
  • 5
    • 84859945474 scopus 로고    scopus 로고
    • The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins
    • Burki F., Okamoto N., Pombert J.F., Keeling P.J. The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins. Proc. Biol. Sci. 2012, 279:2246-2254.
    • (2012) Proc. Biol. Sci. , vol.279 , pp. 2246-2254
    • Burki, F.1    Okamoto, N.2    Pombert, J.F.3    Keeling, P.J.4
  • 6
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 8
    • 77954090275 scopus 로고    scopus 로고
    • Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree
    • Cavalier-Smith T. Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree. Biol. Lett. 2010, 6:342-345.
    • (2010) Biol. Lett. , vol.6 , pp. 342-345
    • Cavalier-Smith, T.1
  • 9
    • 84875373526 scopus 로고    scopus 로고
    • Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa
    • Cavalier-Smith T. Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa. Eur. J. Protistol. 2013, 49:115-178.
    • (2013) Eur. J. Protistol. , vol.49 , pp. 115-178
    • Cavalier-Smith, T.1
  • 10
    • 79954529507 scopus 로고    scopus 로고
    • ProtTest 3: fast selection of best-fit models of protein evolution
    • Darriba D., Taboada G.L., Doallo R., Posada D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 2011, 27:1164-1165.
    • (2011) Bioinformatics , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 11
    • 84858411861 scopus 로고    scopus 로고
    • Rooting the eukaryotic tree with mitochondrial and bacterial proteins
    • Derelle R., Lang B.F. Rooting the eukaryotic tree with mitochondrial and bacterial proteins. Mol. Biol. Evol. 2012, 29:1277-1289.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1277-1289
    • Derelle, R.1    Lang, B.F.2
  • 12
    • 84885373670 scopus 로고    scopus 로고
    • PHYLIP (phylogeny inference package). Distributed by the author. Seattle (WA): Department of Genetics, University of Washington (03.06.01).
    • Felsenstein, J., 2011. PHYLIP (phylogeny inference package). Distributed by the author. Seattle (WA): Department of Genetics, University of Washington (03.06.01).
    • (2011)
    • Felsenstein, J.1
  • 13
    • 84875373955 scopus 로고    scopus 로고
    • Phylogeny and evolution of Planomonadida (Sulcozoa): eight new species and new genera Fabomonas and Nutomonas
    • Glucksman E., Snell E.A., Cavalier-Smith T. Phylogeny and evolution of Planomonadida (Sulcozoa): eight new species and new genera Fabomonas and Nutomonas. Eur. J. Protistol. 2013, 49:179-200.
    • (2013) Eur. J. Protistol. , vol.49 , pp. 179-200
    • Glucksman, E.1    Snell, E.A.2    Cavalier-Smith, T.3
  • 14
    • 62649113993 scopus 로고    scopus 로고
    • Phylogenetic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"
    • Hampl V., Hug L.A., Leigh J.W., Dacks J.B., Lang B.F., Simpson A.G.B., Roger A.J. Phylogenetic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups". Proc. Natl. Acad. Sci. USA 2009, 106:3859-3864.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 3859-3864
    • Hampl, V.1    Hug, L.A.2    Leigh, J.W.3    Dacks, J.B.4    Lang, B.F.5    Simpson, A.G.B.6    Roger, A.J.7
  • 15
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K., Misawa K., Kuma K., Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30:3059-3066.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 18
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N., Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol. Biol. Evol. 2004, 21:1095-1109.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 21
    • 34247899047 scopus 로고    scopus 로고
    • Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
    • Patron N.J., Inagaki Y., Keeling P.J. Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages. Curr. Biol. 2007, 17:887-891.
    • (2007) Curr. Biol. , vol.17 , pp. 887-891
    • Patron, N.J.1    Inagaki, Y.2    Keeling, P.J.3
  • 23
    • 24144503755 scopus 로고    scopus 로고
    • Myosin domain evolution and the primary divergence of eukaryotes
    • Richards T.A., Cavalier-Smith T. Myosin domain evolution and the primary divergence of eukaryotes. Nature 2005, 436:1113-1118.
    • (2005) Nature , vol.436 , pp. 1113-1118
    • Richards, T.A.1    Cavalier-Smith, T.2
  • 26
    • 60349108359 scopus 로고    scopus 로고
    • Evolution: revisiting the root of the eukaryote tree
    • Roger A.J., Simpson A.G. Evolution: revisiting the root of the eukaryote tree. Curr. Biol. 2009, 19:R165-167.
    • (2009) Curr. Biol. , vol.19
    • Roger, A.J.1    Simpson, A.G.2
  • 27
    • 34248188251 scopus 로고    scopus 로고
    • SCaFoS: a tool for selection, concatenation and fusion of sequences for phylogenomics
    • Roure B., Rodriguez-Ezpeleta N., Philippe H. SCaFoS: a tool for selection, concatenation and fusion of sequences for phylogenomics. BMC Evol. Biol. 2007, 7(Suppl. 1):S2.
    • (2007) BMC Evol. Biol. , vol.7 , Issue.SUPPL. 1
    • Roure, B.1    Rodriguez-Ezpeleta, N.2    Philippe, H.3
  • 30
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira H., Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 2001, 17:1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 31
    • 12544255323 scopus 로고    scopus 로고
    • The real 'kingdoms' of eukaryotes
    • Simpson A.G., Roger A.J. The real 'kingdoms' of eukaryotes. Curr. Biol. 2004, 14:R693-696.
    • (2004) Curr. Biol. , vol.14
    • Simpson, A.G.1    Roger, A.J.2
  • 32
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 33
    • 84855881484 scopus 로고    scopus 로고
    • Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains
    • Torruella G., Derelle R., Paps J., Lang B.F., Roger A.J., Shalchian-Tabrizi K., Ruiz-Trillo I. Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Mol. Biol. Evol. 2012, 29:531-544.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 531-544
    • Torruella, G.1    Derelle, R.2    Paps, J.3    Lang, B.F.4    Roger, A.J.5    Shalchian-Tabrizi, K.6    Ruiz-Trillo, I.7
  • 34
    • 79960474019 scopus 로고    scopus 로고
    • Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba"
    • Yabuki A., Nakayama T., Yubuki N., Hashimoto T., Ishida K., Inagaki Y. Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba". J. Eukaryot. Microbiol. 2011, 58:319-331.
    • (2011) J. Eukaryot. Microbiol. , vol.58 , pp. 319-331
    • Yabuki, A.1    Nakayama, T.2    Yubuki, N.3    Hashimoto, T.4    Ishida, K.5    Inagaki, Y.6
  • 35
    • 84872275716 scopus 로고    scopus 로고
    • Rigifila ramosa n. gen., n. sp., a filose apusozoan with a distinctive pellicle, is related to Micronuclearia
    • Yabuki A., Ishida K., Cavalier-Smith T. Rigifila ramosa n. gen., n. sp., a filose apusozoan with a distinctive pellicle, is related to Micronuclearia. Protist 2013, 164:75-88.
    • (2013) Protist , vol.164 , pp. 75-88
    • Yabuki, A.1    Ishida, K.2    Cavalier-Smith, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.