-
1
-
-
66049158304
-
Breakpoint graphs and ancestral genome reconstructions
-
Alekseyev, M.A., Pevzner, P.A.: Breakpoint graphs and ancestral genome reconstructions. G.R. 19(5), 943-957 (2009)
-
(2009)
G.R.
, vol.19
, Issue.5
, pp. 943-957
-
-
Alekseyev, M.A.1
Pevzner, P.A.2
-
2
-
-
79551599525
-
Mugsy: Fast multiple alignment of closely related whole genomes
-
Angiuoli, S.V., Salzberg, S.L.: Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27(3), 334-342 (2011)
-
(2011)
Bioinformatics
, vol.27
, Issue.3
, pp. 334-342
-
-
Angiuoli, S.V.1
Salzberg, S.L.2
-
3
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette, M., Kent, W., Riemer, C., Elnitski, L., Smit, A., Roskin, K., Baertsch, R., Rosenbloom, K., Clawson, H., Green, E., et al.: Aligning multiple genomic sequences with the threaded blockset aligner. G.R. 14(4), 708-715 (2004)
-
(2004)
G.R.
, vol.14
, Issue.4
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.2
Riemer, C.3
Elnitski, L.4
Smit, A.5
Roskin, K.6
Baertsch, R.7
Rosenbloom, K.8
Clawson, H.9
Green, E.10
-
4
-
-
4544321685
-
Phages and the evolution of bacterial pathogens: From genomic rearrangements to lysogenic conversion
-
Brüssow, H., Canchaya, C., Hardt, W.-D.: Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiology and Molecular Biology Reviews 68(3), 560-602 (2004)
-
(2004)
Microbiology and Molecular Biology Reviews
, vol.68
, Issue.3
, pp. 560-602
-
-
Brüssow, H.1
Canchaya, C.2
Hardt, W.-D.3
-
5
-
-
84866266717
-
Mapping single molecule sequencing reads using basic local alignment with successive refinement (blasr): Application and theory
-
Chaisson, M., Tesler, G.: Mapping single molecule sequencing reads using basic local alignment with successive refinement (blasr): application and theory. BMC Bioinformatics 13, 238 (2012)
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 238
-
-
Chaisson, M.1
Tesler, G.2
-
6
-
-
15944389483
-
Community-associated mrsa-resistance and virulence converge
-
Chambers, H.F., et al.: Community-associated mrsa-resistance and virulence converge. N. Engl. J. Med. 352(14), 1485-1487 (2005)
-
(2005)
N. Engl. J. Med.
, vol.352
, Issue.14
, pp. 1485-1487
-
-
Chambers, H.F.1
-
7
-
-
68149144388
-
High frequency of hotspot mutations in core genes of escherichia coli due to short-term positive selection
-
Chattopadhyay, S., Weissman, S.J., Minin, V.N., Russo, T.A., Dykhuizen, D.E., Sokurenko, E.V.: High frequency of hotspot mutations in core genes of escherichia coli due to short-term positive selection. PNAS 106(30), 12412-12417 (2009)
-
(2009)
PNAS
, vol.106
, Issue.30
, pp. 12412-12417
-
-
Chattopadhyay, S.1
Weissman, S.J.2
Minin, V.N.3
Russo, T.A.4
Dykhuizen, D.E.5
Sokurenko, E.V.6
-
8
-
-
3543051830
-
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
-
Darling, A., Mau, B., Blattner, F., Perna, N.: Mauve: multiple alignment of conserved genomic sequence with rearrangements. G.R. 14(7), 1394-1403 (2004)
-
(2004)
G.R.
, vol.14
, Issue.7
, pp. 1394-1403
-
-
Darling, A.1
Mau, B.2
Blattner, F.3
Perna, N.4
-
9
-
-
39449112551
-
Complete chemical synthesis, assembly, and cloning of a mycoplasma genitalium genome
-
Gibson, D.G., Benders, G.A., Andrews-Pfannkoch, C., Denisova, E.A., Baden-Tillson, H., Zaveri, J., Stockwell, T.B., Brownley, A., Thomas, D.W., Algire, M.A., et al.: Complete chemical synthesis, assembly, and cloning of a mycoplasma genitalium genome. Science Signalling 319(5867), 1215 (2008)
-
(2008)
Science Signalling
, vol.319
, Issue.5867
, pp. 1215
-
-
Gibson, D.G.1
Benders, G.A.2
Andrews-Pfannkoch, C.3
Denisova, E.A.4
Baden-Tillson, H.5
Zaveri, J.6
Stockwell, T.B.7
Brownley, A.8
Thomas, D.W.9
Algire, M.A.10
-
10
-
-
1842508193
-
Pathogenic escherichia coli
-
Kaper, J.B., Nataro, J.P., Mobley, H.L.T.: Pathogenic escherichia coli. Nature Reviews Microbiology 2(2), 123-140 (2004)
-
(2004)
Nature Reviews Microbiology
, vol.2
, Issue.2
, pp. 123-140
-
-
Kaper, J.B.1
Nataro, J.P.2
Mobley, H.L.T.3
-
11
-
-
33751217150
-
The bacterial species definition in the genomic era
-
Konstantinidis, K., Ramette, A., Tiedje, J.: The bacterial species definition in the genomic era. Philosophical Transactions of the Royal Society B: Biological Sciences 361(1475), 1929-1940 (2006)
-
(2006)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.361
, Issue.1475
, pp. 1929-1940
-
-
Konstantinidis, K.1
Ramette, A.2
Tiedje, J.3
-
12
-
-
39049145326
-
Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
-
Lunter, G., Rocco, A., Mimouni, N., Heger, A., Caldeira, A., Hein, J.: Uncertainty in homology inferences: assessing and improving genomic sequence alignment. G.R. 18(2), 298-309 (2008)
-
(2008)
G.R.
, vol.18
, Issue.2
, pp. 298-309
-
-
Lunter, G.1
Rocco, A.2
Mimouni, N.3
Heger, A.4
Caldeira, A.5
Hein, J.6
-
13
-
-
80955139667
-
Paired de bruijn graphs: A novel approach for incorporating mate pair information into genome assemblers
-
Medvedev, P., Pham, S., Chaisson, M., Tesler, G., Pevzner, P.: Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers. JCB 18(11), 1625-1634 (2011)
-
(2011)
JCB
, vol.18
, Issue.11
, pp. 1625-1634
-
-
Medvedev, P.1
Pham, S.2
Chaisson, M.3
Tesler, G.4
Pevzner, P.5
-
14
-
-
0029655382
-
Bacterial insertion sequences
-
Springer
-
Ohtsubo, E., Sekine, Y.: Bacterial insertion sequences. In: Transposable Elements, pp. 1-26. Springer (1996)
-
(1996)
Transposable Elements
, pp. 1-26
-
-
Ohtsubo, E.1
Sekine, Y.2
-
15
-
-
80052551536
-
Cactus: Algorithms for genome multiple sequence alignment
-
Paten, B., Earl, D., Nguyen, N., Diekhans, M., Zerbino, D., Haussler, D.: Cactus: Algorithms for genome multiple sequence alignment. G.R. 21(9), 1512-1528 (2011)
-
(2011)
G.R.
, vol.21
, Issue.9
, pp. 1512-1528
-
-
Paten, B.1
Earl, D.2
Nguyen, N.3
Diekhans, M.4
Zerbino, D.5
Haussler, D.6
-
16
-
-
70350399751
-
Decoding synteny blocks and large-scale duplications in mammalian and plant genomes
-
Peng, Q., Alekseyev, M., Tesler, G., Pevzner, P.: Decoding synteny blocks and large-scale duplications in mammalian and plant genomes. Algorithms in Bioinformatics, 220-232 (2009)
-
(2009)
Algorithms in Bioinformatics
, pp. 220-232
-
-
Peng, Q.1
Alekseyev, M.2
Tesler, G.3
Pevzner, P.4
-
17
-
-
4644275238
-
De novo repeat classification and fragment assembly
-
Pevzner, P.A., Tang, H., Tesler, G.: De novo repeat classification and fragment assembly. G.R. 14(9), 1786-1796 (2004)
-
(2004)
G.R.
, vol.14
, Issue.9
, pp. 1786-1796
-
-
Pevzner, P.A.1
Tang, H.2
Tesler, G.3
-
18
-
-
77957787194
-
Drimm-synteny: Decomposing genomes into evolutionary conserved segments
-
Pham, S.K., Pevzner, P.A.: Drimm-synteny: decomposing genomes into evolutionary conserved segments. Bioinformatics 26(20), 2509-2516 (2010)
-
(2010)
Bioinformatics
, vol.26
, Issue.20
, pp. 2509-2516
-
-
Pham, S.K.1
Pevzner, P.A.2
-
19
-
-
33947408098
-
Cinteny: Flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
-
Sinha, A.U., Meller, J.: Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms. BMC Bioinformatics 8(1), 82 (2007)
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 82
-
-
Sinha, A.U.1
Meller, J.2
-
20
-
-
0000770675
-
Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne, L., Brenner, D., et al.: Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. International Journal of Systematic Bacteriology 37(4), 463-464 (1987)
-
(1987)
International Journal of Systematic Bacteriology
, vol.37
, Issue.4
, pp. 463-464
-
-
Wayne, L.1
Brenner, D.2
|