The significant contribution of fungi to soil N2O production across diverse ecosystems

Applied Soil Ecology

Volumn 73, Issue , 2014, Pages 70-77

  Chen, Huaihai ^a   Mothapo, Nape V ^a   Shi, Wei ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Antibiotics; Bacteria; Ecosystems; Fungi; Nitrous oxide; Soil pH

Indexed keywords

EID: 84884379618     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2013.08.011     Document Type: Article

References (57)

1. Anderson J.P.E., Domsch K.H. Quantification of bacterial and fungal contributions of soil respiration. Arch. Microbiol. 1973, 93:113-127.
2. 13C acetate. Soil Biol. Biochem. 1999, 31:1015-1020.
3. Bååth E., Anderson T.H. Comparison of soil fungal:bacterial ratios in a pH gradient using physiological and PLFA-based techniques. Soil Biol. Biochem. 2003, 35:955-963.
4. Badalucco L., Pomaré F., Grego S., Landi L., Nannipieri P. Activity and degradation of streptomycin and cycloheximide in soil. Biol. Fertil. Soils 1994, 18:334-340.
5. Bardgett R.D., Lovell R.D., Hobbs P.J., Jarvis S.C. Seasonal changes in soil microbial communities along a fertility gradient of temperate grasslands. Soil Biol. Biochem. 1999, 31:1021-1030.
6. Bardgett R.D., McAlister E. The measurement of soil fungal:bacterial biomass ratios as an indicator of ecosystem self-regulation in temperate meadow grasslands. Biol. Fertil. Soils 1999, 29:282-290.
7. Beare M.H., Hu S., Coleman D.C., Hendrix P.F. Influences of mycelial fungi on soil aggregation and organic matter storage in conventional and no-tillage soils. Appl. Soil Ecol. 1997, 5:211-219.
8. Beare M.H., Neely C.L., Coleman D.C., Hargrove W.L. A substrate-induced respiration (SIR) method for measurement of fungal and bacterial biomass on plant residues. Soil Biol. Biochem. 1990, 22:585-594.
9. Bleakley B.H., Tiedje J.M. Nitrous oxide production by organisms other than nitrifiers or denitrifiers. Appl. Environ. Microb. 1982, 44:1342-1348.
10. Bollag J.M., Tung G. Nitrous oxide release by soil fungi. Soil Biol. Biochem. 1972, 4:271-276.
11. Brookes P.C., Landman A., Pruden G., Jenkinson D.S. Chloroform fumigation and the release of soil nitrogen: a rapid direct extraction method to measure microbial biomass nitrogen in soil. Soil Biol. Biochem. 1985, 17:837-842.
12. Campbell C.D., Chapman S.J., Cameron C.M., Davidson M.S., Potts J.M. A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial communities by using whole soil. Appl. Environ. Microb. 2003, 69:3593-3599.
13. Choi K.-H., Dobbs F.C. Comparison of two kinds of Biolog microplates (GN and ECO) in their ability to distinguish among aquatic microbial communities. J. Microbiol. Method 1999, 36:203-213.
14. Crenshaw C.L., Lauber C., Sinsabaugh R.L., Stavely L.K. Fungal control of nitrous oxide production in semiarid grassland. Biogeochemistry 2008, 87:17-27.
15. Davidson E.A. Fluxes of nitrous oxide and nitric oxide from terrestrial ecosystems. Microbial Production and Consumption of Greenhouse Gases 1991, 219-235. American Society for Microbiology, Washington, DC. J.E. Rogers, W.E. Whitman (Eds.).
16. de Vries F.T., Hoffland E., van Eekeren N., Brussaard L., Bloem J. Fungal:bacterial ratios in grasslands with contrasting nitrogen management. Soil Biol. Biochem. 2006, 38:2092-2103.
17. Fierer N., Jackson R.B. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:626-631.
18. Frey S.D., Elliott E.T., Paustian K. Bacterial and fungal abundance and biomass in conventional and no-tillage agroecosystems along two climatic gradients. Soil Biol. Biochem. 1999, 31:573-585.
19. Frostegård Å., Bååth E., Tunlio A. Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty acid analysis. Soil Biol. Biochem. 1993, 25:723-730.
20. Garland J.L. Analytical approaches to the characterization of samples of microbial communities using patterns of potential C source utilization. Soil Biol. Biochem. 1996, 28:213-221.
21. Hedlund K. Soil microbial community structure in relation to vegetation management on former agricultural land. Soil Biol. Biochem. 2002, 34:1299-1307.
22. Insam H. A new set of substrates proposed for community characterization in environmental samples. Microbial Communities: Functional versus Structural Approaches 1997, 259-260. Springer-Verlag, Berlin, Germany. H. Insam, A. Rangger (Eds.).
23. IPCC Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change 2007, Cambridge University Press, Cambridge, UK/New York, NY, USA. S. Solomon (Ed.).
24. Jimenez R.R., Ladha J.K. Automated elemental analysis: A rapid and reliable but expensive measurement of total carbon and nitrogen in plant and soil samples. Commun. Soil Sci. Plan. 1993, 24:1897-1924.
25. Joergensen R.G., Wichern F. Quantitative assessment of the fungal contribution to microbial tissue in soil. Soil Biol. Biochem. 2008, 40:2977-2991.
26. 4 in a fertilized Colorado grassland soil. J. Geophys. Res. 2004, 109:D05303.
27. Knief C., Vanitchung S., Harvey N.W., Conrad R., Dunfield P.F., Chidthaisong A. Diversity of methanotrophic bacteria in tropical upland soils under different land uses. Appl. Environ. Microb. 2005, 71:3826-3831.
28. Kurakov A.V., Nosikov A.N., Skrynnikova E.V., L'Vov N.P. Nitrate reductase and nitrous oxide production by Fusarium oxysporum 11dn1 under aerobic and anaerobic conditions. Curr. Microbiol. 2000, 41:114-119.
29. Kurakov A.V., Pakhnenko O.V., Kostina N.V., Umarov M.M. Microscopic fungi producing nitrous oxide in nutrient media and in sterile soil. Eurasian Soil Sci. 1997, 30:1344-1349.
30. 2O emissions and gross N transformations related to fungi and bacteria in a grassland soil. Appl. Soil Ecol. 2009, 42:25-30.
31. Laughlin R.J., Stevens R.J. Evidence for fungal dominance of denitrification and codenitrification in a grassland soil. Soil Sci. Soc. Am. J. 2002, 66:1540-1548.
32. Lavrent'ev R., Zaitsev S., Sudnitsyn I., Kurakov A. Nitrous oxide production by fungi in soils under different moisture levels. Mosc. Univ. Soil Sci. Bull. 2008, 63:178-183.
33. Levine U.Y., Teal T.K., Robertson G.P., Schmidt T.M. Agriculture's impact on microbial diversity and associated fluxes of carbon dioxide and methane. ISME J. 2011, 5:1683-1691.
34. Ma W.K., Farrell R.E., Siciliano S.D. Soil formate regulates the fungal nitrous oxide emission pathway. Appl. Environ. Microb. 2008, 74:6690-6696.
35. 2O production by heterotrophic N transformations in a semiarid soil. Appl. Soil Ecol. 2006, 32:253-263.
36. Mulvaney R.L. Nitrogen-inorganic forms. Methods of Soil Analysis, Part 3-Chemical Methods 1994, 1123-1184. Soil Science Society of America, Inc., American Society of Agronomy Inc., Madison, WI. D.L. Sparks, A.L. Page, P.A. Helmke, R.H. Loeppert, P.N. Soltanpour, M.A. Tabatabai, C.T. Johnston, M.E. Sumner (Eds.).
37. Ohtonen R., Fritze H., Pennanen T., Jumpponen A., Trappe J. Ecosystem properties and microbial community changes in primary succession on a glacier forefront. Oecologia 1999, 119:239-246.
38. Petersen S., Klug M. Effects of sieving, storage, and incubation temperature on the phospholipid fatty acid profile of a soil microbial community. Appl. Environ. Microb. 1994, 60:2421-2430.
39. Prendergast-Miller M.T., Baggs E.M., Johnson D. Nitrous oxide production by the ectomycorrhizal fungi Paxillus involutus and Tylospora fibrillosa. FEMS Microbiol. Lett. 2011, 316:31-35.
40. 2O): the dominant ozone-depleting substance emitted in the 21st century. Science 2009, 326:123-125.
41. Ros M., Goberna M., Pascual J.A., Klammer S., Insam H. 16S rDNA analysis reveals low microbial diversity in community level physiological profile assays. J. Microbiol. Methods 2008, 72:221-226.
42. Rousk J., Baath E., Brookes P.C., Lauber C.L., Lozupone C., Caporaso J.G., Knight R., Fierer N. Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J. 2010, 4:1340-1351.
43. Rousk J., Brookes P.C., Baath E. Contrasting soil pH effects on fungal and bacterial growth suggest functional redundancy in carbon mineralization. Appl. Environ. Microb. 2009, 75:1589-1596.
44. Seo D.C., DeLaune R.D. Fungal and bacterial mediated denitrification in wetlands: influence of sediment redox condition. Water Res. 2010, 44:2441-2450.
45. Shoun H., Tanimoto T. Denitrification by the fungus Fusarium oxysporum and involvement of cytochrome P-450 in the respiratory nitrite reduction. J. Biol. Chem. 1991, 266:11078-11082.
46. Smith K.A., Conen F. Impacts of land management on fluxes of trace greenhouse gases. Soil Use Manage. 2004, 20:255-263.
47. 2O production following chloropicrin fumigation. Appl. Soil Ecol. 2006, 31:101-109.
48. Strickland M.S., Rousk J. Considering fungal:bacterial dominance in soils-methods, controls, and ecosystem implications. Soil Biol. Biochem. 2010, 42:1385-1395.
49. Thomson A.J., Giannopoulos G., Pretty J., Baggs E.M., Richardson D.J. Biological sources and sinks of nitrous oxide and strategies to mitigate emissions. Philos. T. Roy. Soc. B 2012, 367:1157-1168.
50. Tian L., Dell E., Shi W. Chemical composition of dissolved organic matter in agroecosystems: Correlations with soil enzyme activity and carbon and nitrogen mineralization. Appl. Soil Ecol. 2010, 46:426-435.
51. van der Wal A., van Veen J.A., Smant W., Boschker H.T.S., Bloem J., Kardol P., van der Putten W.H., de Boer W. Fungal biomass development in a chronosequence of land abandonment. Soil Biol. Biochem. 2006, 38:51-60.
52. Vance E.D., Brookes P.C., Jenkinson D.S. An extraction method for measuring soil microbial biomass C. Soil Biol. Biochem. 1987, 19:703-707.
53. Wheeler K.A., Hurdman B.F., Pitt J.I. Influence of pH on the growth of some toxigenic species of Aspergillus, Penicillium and Fusarium. Int. J. Food Microbiol. 1991, 12:141-149.
54. 2O production in an arable peat soil in Central Kalimantan, Indonesia. Soil Sci. Plant Nutr. 2007, 53:806-811.
55. Zhaorigetu, Komatsuzaki M., Sato Y., Ohta H. Relationships between fungal biomass and nitrous oxide emission in upland rice soils under no tillage and cover cropping systems. Microbes Environ. 2008, 23:201-208.
56. Zhou Z., Takaya N., Sakairi M.A.C., Shoun H. Oxygen requirement for denitrification by the fungus Fusarium oxysporum. Arch. Microbiol. 2001, 175:19-25.
57. Zumft W.G. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. R. 1997, 61:533-616.