Surface Glycosylation Profiles of Urine Extracellular Vesicles

PLoS ONE

Volumn 8, Issue 9, 2013, Pages

  Gerlach, Jared Q ^a   Krüger, Anja ^a   Gallogly, Susan ^a   Hanley, Shirley A ^a   Hogan, Marie C ^b   Ward, Christopher J ^b   Joshi, Lokesh ^a   Griffin, Matthew D ^a  

^a NATIONAL UNIVERSITY OF IRELAND   (Ireland)

^b MAYO CLINIC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AQUAPORIN 2; CARBOHYDRATE DERIVATIVE; CD24 ANTIGEN; LECTIN; N ACETYLGLUCOSAMINE; N ACETYLLACTOSAMINE; N ACETYLNEURAMINIC ACID; TAMM HORSFALL GLYCOPROTEIN; UNCLASSIFIED DRUG; VESICULAR TRANSPORT PROTEIN;

ADULT; ARTICLE; BINDING KINETICS; CELL ORGANELLE; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; FILTRATION; FLOW CYTOMETRY; GLYCOSYLATION; HUMAN; HUMAN CELL; HYDROLYSIS; KIDNEY POLYCYSTIC DISEASE; MALE; MICROARRAY ANALYSIS; PROTEIN BINDING; PROTEIN PURIFICATION; ULTRACENTRIFUGATION; URINARY EXTRACELLULAR VESICLE; URINE;

ADULT; CARBOHYDRATES; CELL-DERIVED MICROPARTICLES; CLUSTER ANALYSIS; EXOSOMES; FEMALE; FLOW CYTOMETRY; GLYCOSYLATION; HUMANS; LECTINS; MALE; POLYCYSTIC KIDNEY, AUTOSOMAL DOMINANT; PROTEIN ARRAY ANALYSIS; PROTEIN BINDING; RENAL INSUFFICIENCY, CHRONIC; URINE; UROMODULIN; YOUNG ADULT;

EID: 84884376120     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0074801     Document Type: Article

References (61)

1. Coresh J, Selvin E, Stevens LA, Manzi J, Kusek JW, et al. (2007) Prevalence of chronic kidney disease in the United States. Jama 298: 2038-2047.
2. Levey AS, Atkins R, Coresh J, Cohen EP, Collins AJ, et al. (2007) Chronic kidney disease as a global public health problem: approaches and initiatives- a position statement from Kidney Disease Improving Global Outcomes. Kidney Int 72: 247-259.
3. Zhang QL, Rothenbacher D, (2008) Prevalence of chronic kidney disease in population-based studies: systematic review. BMC Public Health 8: 117.
4. Stratta P, Canavese C, Marengo M, Mesiano P, Besso L, et al. (2007) Risk management of renal biopsy: 1387 cases over 30 years in a single centre. Eur J Clin Invest 37: 954-963.
5. Whittier WL, Korbet SM, (2004) Timing of complications in percutaneous renal biopsy. J Am Soc Nephrol 15: 142-147.
6. Joseph AJ, Compton SP, Holmes LH, Annand A, Self SE, et al. (2010) Utility of percutaneous renal biopsy in chronic kidney disease. Nephrology (Carlton) 15: 544-548.
7. Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, et al. (2009) Large-scale proteomics and phosphoproteomics of urinary exosomes. J Am Soc Nephrol 20: 363-379.
8. Hoorn EJ, Pisitkun T, Zietse R, Gross P, Frokiaer J, et al. (2005) Prospects for urinary proteomics: exosomes as a source of urinary biomarkers. Nephrology (Carlton) 10: 283-290.
9. Miranda KC, Bond DT, McKee M, Skog J, Paunescu TG, et al. (2010) Nucleic acids within urinary exosomes/microvesicles are potential biomarkers for renal disease. Kidney Int 78: 191-199.
10. Pisitkun T, Johnstone R, Knepper MA, (2006) Discovery of urinary biomarkers. Mol Cell Proteomics 5: 1760-1771.
11. Pisitkun T, Shen RF, Knepper MA, (2004) Identification and proteomic profiling of exosomes in human urine. Proc Natl Acad Sci 101: 13368-13373.
12. Raj DAA, Fiume I, Capasso G, Pocsfalvi G, (2012) A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes. Kidney Int 81: 1263-1272.
13. Simpson RJ, Lim JW, Moritz RL, Mathivanan S, (2009) Exosomes: proteomic insights and diagnostic potential. Expert Rev Proteomics 6: 267-283.
14. Zhou H, Cheruvanky A, Hu X, Matsumoto T, Hiramatsu N, et al. (2008) Urinary exosomal transcription factors, a new class of biomarkers for renal disease. Kidney Int 74: 613-621.
15. van Balkom BW, Pisitkun T, Verhaar MC, Knepper MA, (2011) Exosomes and the kidney: prospects for diagnosis and therapy of renal diseases. Kidney Int 80: 1138-1145.
16. Adachi J, Kumar C, Zhang Y, Olsen JV, Mann M, (2006) The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol 7: R80.
17. Gonzales P, Pisitkun T, Knepper MA, (2008) Urinary exosomes: is there a future? Nephrol Dial Transplant 23: 1799-1801.
18. O'Riordan E, Addabbo F, Goligorsky MS, (2007) Urine proteomics-prospects for future diagnostics. Acta Physiol Hung 94: 133-141.
19. Hogan MC, Manganelli L, Woollard JR, Masyuk AI, Masyuk TV, et al. (2009) Characterization of PKD protein-positive exosome-like vesicles. J Am Soc Nephrol 20: 278-288.
20. Escrevente C, Keller S, Altevogt P, Costa J, (2011) Interaction and uptake of exosomes by ovarian cancer cells. BMC Cancer 11: 108.
21. Gerlach JQ, Sharma S, Leister KJ, Joshi L (2012) A Tight-Knit Group: Protein Glycosylation, Endoplasmic Reticulum Stress and the Unfolded Protein Response. In: Agostinis P, Samali A editors. Endoplasmic Reticulum Stress in Health and Disease. Springer Netherlands. 23-39.
22. Cunard R, Sharma K, (2011) The endoplasmic reticulum stress response and diabetic kidney disease. Am J Physiol Renal Physiol 300: F1054-1061.
23. Cybulsky AV, (2010) Endoplasmic reticulum stress in proteinuric kidney disease. Kidney Int 77: 187-193.
24. Dickhout JG, Krepinsky JC, (2009) Endoplasmic reticulum stress and renal disease. Antioxid Redox Signal 11: 2341-2352.
25. Inagi R, (2010) Endoplasmic reticulum stress as a progression factor for kidney injury. Curr Opin Pharmacol 10: 156-165.
26. Adam J, Bollee G, Fougeray S, Noel LH, Antignac C, et al. (2011) Endoplasmic Reticulum Stress in UMOD-Related Kidney Disease: A Human Pathologic Study. Am J Kidney Dis 59: 117-121.
27. Hashii N, Kawasaki N, Itoh S, Nakajima Y, Kawanishi T, et al. (2009) Alteration of N-glycosylation in the kidney in a mouse model of systemic lupus erythematosus: relative quantification of N-glycans using an isotope-tagging method. Immunology 126: 336-345.
28. Staubach S, Schadewaldt P, Wendel U, Nohroudi K, Hanisch FG, (2011) Differential glycomics of epithelial membrane glycoproteins from urinary exovesicles reveals shifts towards complex-type N-glycosylation in classical galactosemia. J Proteome Res 11: 906-916.
29. Batista BS, Eng WS, Pilobello KT, Hendricks-Munoz KD, Mahal LK, (2011) Identification of a conserved glycan signature for microvesicles. J Proteome Res 10: 4624-4633.
30. Krishnamoorthy L, Bess JW Jr, Preston AB, Nagashima K, Mahal LK, (2009) HIV-1 and microvesicles from T cells share a common glycome, arguing for a common origin. Nat Chem Biol 5: 244-250.
31. Robinson LN, Artpradit C, Raman R, Shriver ZH, Ruchirawat M, et al. (2012) Harnessing glycomics technologies: integrating structure with function for glycan characterization. Electrophoresis 33: 797-814.
32. Gerlach JQ, Cunningham S, Kane M, Joshi L, (2010) Glycobiomimics and glycobiosensors. Biochem Soc Trans 38: 1333-1336.
33. Sharon N, (2007) Lectins: carbohydrate-specific reagents and biological recognition molecules. J Biol Chem 282: 2753-2764.
34. Chen P, Liu Y, Kang X, Sun L, Yang P, et al. (2008) Identification of N-glycan of alpha-fetoprotein by lectin affinity microarray. J Cancer Res Clin Oncol 134: 851-860.
35. Ebe Y, Kuno A, Uchiyama N, Koseki-Kuno S, Yamada M, et al. (2006) Application of lectin microarray to crude samples: differential glycan profiling of lec mutants. J Biochem 139: 323-327.
36. Hirabayashi J, (2008) Concept, strategy and realization of lectin-based glycan profiling. J Biochem 144: 139-147.
37. Kuno A, Uchiyama N, Koseki-Kuno S, Ebe Y, Takashima S, et al. (2005) Evanescent-field fluorescence-assisted lectin microarray: a new strategy for glycan profiling. Nat Methods 2: 851-856.
38. Pilobello KT, Krishnamoorthy L, Slawek D, Mahal LK, (2005) Development of a lectin microarray for the rapid analysis of protein glycopatterns. Chembiochem 6: 985-989.
39. Rosenfeld R, Bangio H, Gerwig GJ, Rosenberg R, Aloni R, et al. (2007) A lectin array-based methodology for the analysis of protein glycosylation. J Biochem Biophys Methods 70: 415-426.
40. Tateno H, Uchiyama N, Kuno A, Togayachi A, Sato T, et al. (2007) A novel strategy for mammalian cell surface glycome profiling using lectin microarray. Glycobiology 17: 1138-1146.
41. Fernandez-Llama P, Khositseth S, Gonzales PA, Star RA, Pisitkun T, et al. (2010) Tamm-Horsfall protein and urinary exosome isolation. Kidney Int 77: 736-742.
42. Gonzales PA, Zhou H, Pisitkun T, Wang NS, Star RA, et al. (2010) Isolation and purification of exosomes in urine. Methods Mol Biol 641: 89-99.
43. Mathias RA, Lim JW, Ji H, Simpson RJ, (2009) Isolation of extracellular membranous vesicles for proteomic analysis. Methods Mol Biol 528: 227-242.
44. Thery C, Amigorena S, Raposo G, Clayton A, (2006) Isolation and characterization of exosomes from cell culture supernatants and biological fluids. Curr Protoc Cell Biol 30: 3.22.21-23.22.29.
45. Zhou H, Yuen PS, Pisitkun T, Gonzales PA, Yasuda H, et al. (2006) Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery. Kidney Int 69: 1471-1476.
46. Keller S, Rupp C, Stoeck A, Runz S, Fogel M, et al. (2007) CD24 is a marker of exosomes secreted into urine and amniotic fluid. Kidney Int 72: 1095-1102.
47. Cheruvanky A, Zhou H, Pisitkun T, Kopp JB, Knepper MA, et al. (2007) Rapid isolation of urinary exosomal biomarkers using a nanomembrane ultrafiltration concentrator. Am J Physiol Renal Physiol 292: F1657-1661.
48. Rood IM, Deegens JK, Merchant ML, Tamboer WP, Wilkey DW, et al. (2010) Comparison of three methods for isolation of urinary microvesicles to identify biomarkers of nephrotic syndrome. Kidney Int 78: 810-816.
49. Yang L, Broom MF, Tucker IG, (2012) Characterization of a nanoparticulate drug delivery system using scanning ion occlusion sensing. Pharm Res 29: 2578-2586.
50. Simons M, Raposo G, (2009) Exosomes-vesicular carriers for intercellular communication. Curr Opin Cell Biol 21: 575-581.
51. Matsumura K, Higashida K, Hata Y, Kominami J, Nakamura-Tsuruta S, et al. (2009) Comparative analysis of oligosaccharide specificities of fucose-specific lectins from Aspergillus oryzae and Aleuria aurantia using frontal affinity chromatography. Anal Biochem 386: 217-221.
52. Gerlach JQ, Kilcoyne M, Farrell MP, Kane M, Joshi L, (2012) Differential release of high mannose structural isoforms by fungal and bacterial endo-beta-N-acetylglucosaminidases. Mol Biosyst 8: 1472-1481.
53. Simpson RJ, Jensen SS, Lim JW, (2008) Proteomic profiling of exosomes: current perspectives. Proteomics 8: 4083-4099.
54. Gomes MM, Suzuki H, Brooks MT, Tomana M, Moldoveanu Z, et al. (2010) Recognition of galactose-deficient O-glycans in the hinge region of IgA1 by N-acetylgalactosamine-specific snail lectins: a comparative binding study. Biochemistry 49: 5671-5682.
55. Tanaka M, Seki G, Someya T, Nagata M, Fujita T, (2011) Aberrantly glycosylated IgA1 as a factor in the pathogenesis of IgA nephropathy. Clin Dev Immunol 2011: 470803.
56. Kojima K, Nosaka H, Kishimoto Y, Nishiyama Y, Fukuda S, et al. (2011) Defective glycosylation of alpha-dystroglycan contributes to podocyte flattening. Kidney Int 79: 311-316.
57. Schnaar RL, Suzuki A, Stanley P (2009) Glycosphingolipids. In: Varki A, Cummings RD, Esko JD, Freeze HH, et al. editors. Essentials of Glycobiology, 2 edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press.
58. Grabska T, Baginski T, Kubicz A, Kokot M, Kokot F, et al. (1996) Alterations of Tamm-Horsfall protein immunoreactivity after partial desialylation and deglycosylation. Arch Immunol Ther Exp (Warsz) 44: 241-248.
59. Tamm I, Horsfall FL Jr, (1952) A mucoprotein derived from human urine which reacts with influenza, mumps, and Newcastle disease viruses. J Exp Med 95: 71-97.
60. Wu TH, Hsieh SC, Li KJ, Wu CH, Yu CL, et al. (2008) Altered glycosylation of Tamm-Horsfall glycoprotein derived from renal allograft recipients leads to changes in its biological function. Transpl Immunol 18: 237-245.
61. Kilcoyne M, Gerlach JQ, Gough R, Gallagher ME, Kane M, et al. (2012) Construction of a natural mucin microarray and interrogation for biologically relevant glyco-epitopes. Anal Chem 84: 3330-3338.