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Volumn 4, Issue JUN, 2013, Pages

Metagenome reveals potential microbial degradation of hydrocarbon coupled with sulfate reduction in an oil-immersed chimney from Guaymas Basin

Author keywords

Biodegradation; Chimney; Deep sea; Guaymas; Hydrocarbon; Hydrothermal vent; Metagenome; Sulfate reduction

Indexed keywords

ETHYLBENZENE; HYDROCARBON; ORTHO XYLENE; PETROLEUM DERIVATIVE; SULFATE; TOLUENE;

EID: 84884258965     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2013.00148     Document Type: Article
Times cited : (31)

References (60)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • doi: 10.1093/nar/25.17.3389
    • Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402. doi: 10.1093/nar/25.17.3389
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W., and Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0141614065 scopus 로고    scopus 로고
    • Desulfonauticus submarinus gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent
    • Audiffrin, C., Cayol, J. L., Joulian, C., Casalot, L., Thomas, P., Garcia, J. L., et al. (2003). Desulfonauticus submarinus gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 53, 1585-1590.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1585-1590
    • Audiffrin, C.1    Cayol, J.L.2    Joulian, C.3    Casalot, L.4    Thomas, P.5    Garcia, J.L.6
  • 4
    • 0001012309 scopus 로고
    • Hydrocarbons in surface sediments from a Guaymas Basin hydrothermal vent site
    • doi: 10.1016/0146-6380(88)90146-5
    • Bazylinski, D. A., Farrington, J. W., and Jannasch, H. W. (1988). Hydrocarbons in surface sediments from a Guaymas Basin hydrothermal vent site. Org. Geochem. 12, 547-559. doi: 10.1016/0146-6380(88)90146-5
    • (1988) Org. Geochem. , vol.12 , pp. 547-559
    • Bazylinski, D.A.1    Farrington, J.W.2    Jannasch, H.W.3
  • 5
    • 48749117805 scopus 로고    scopus 로고
    • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    • doi: 10.1073/pnas.0709942105
    • Biddle, J. F., Fitz-Gibbon, S., Schuster, S. C., Brenchley, J. E., and House, C. H. (2008). Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc. Natl. Acad. Sci. U.S.A. 105, 10583-10588. doi: 10.1073/pnas.0709942105
    • (2008) Proc. Natl. Acad. Sci. U.S.A. , vol.105 , pp. 10583-10588
    • Biddle, J.F.1    Fitz-Gibbon, S.2    Schuster, S.C.3    Brenchley, J.E.4    House, C.H.5
  • 6
    • 72649088719 scopus 로고    scopus 로고
    • Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
    • doi: 10.1038/ismej.2009.79
    • Brazelton, W. J., and Baross, J. A. (2009). Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J. 3, 1420-1424. doi: 10.1038/ismej.2009.79
    • (2009) ISME J. , vol.3 , pp. 1420-1424
    • Brazelton, W.J.1    Baross, J.A.2
  • 7
    • 76549087358 scopus 로고    scopus 로고
    • Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys
    • doi: 10.1073/pnas.0905369107
    • Brazelton, W. J., Ludwig, K. A., Sogin, M. L., Andreishcheva, E. N., Kelley, D. S., Shen, C. C., et al. (2010). Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys. Proc. Natl. Acad. Sci. U.S.A. 107, 1612-1617. doi: 10.1073/pnas.0905369107
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 1612-1617
    • Brazelton, W.J.1    Ludwig, K.A.2    Sogin, M.L.3    Andreishcheva, E.N.4    Kelley, D.S.5    Shen, C.C.6
  • 8
    • 0025274687 scopus 로고
    • Archaeoglobus profundus sp nov., represents a new species within the sulfate-reducing Archaebacteria
    • doi: 10.1016/S0723-2020(11)80176-1
    • Burggraf, S., Jannasch, H. W., Nicolaus, B., and Stetter, K. O. (1990). Archaeoglobus profundus sp. nov., represents a new species within the sulfate-reducing Archaebacteria. Syst. Appl. Microbiol. 13, 24-28. doi: 10.1016/S0723-2020(11)80176-1
    • (1990) Syst. Appl. Microbiol. , vol.13 , pp. 24-28
    • Burggraf, S.1    Jannasch, H.W.2    Nicolaus, B.3    Stetter, K.O.4
  • 9
    • 77957358045 scopus 로고    scopus 로고
    • Diversity of benzyl- and alkylsuccinate synthase genes in hydrocarbon-impacted environments and enrichment cultures
    • doi: 10.1021/es1002023
    • Callaghan, A. V., Davidova, I. A., Savage-Ashlock, K., Parisi, V. A., Gieg, L. M., Suflita, J. M., et al. (2010). Diversity of benzyl- and alkylsuccinate synthase genes in hydrocarbon-impacted environments and enrichment cultures. Environ. Sci. Technol. 44, 7287-7294. doi: 10.1021/es1002023
    • (2010) Environ. Sci. Technol. , vol.44 , pp. 7287-7294
    • Callaghan, A.V.1    Davidova, I.A.2    Savage-Ashlock, K.3    Parisi, V.A.4    Gieg, L.M.5    Suflita, J.M.6
  • 10
    • 31544483932 scopus 로고    scopus 로고
    • Community genomics among stratified microbial assemblages in the ocean's interior
    • doi: 10.1126/science.1120250
    • Delong, E. F., Preston, C. M., Mincer, T., Rich, V., Hallam, S. J., Frigaard, N. U., et al. (2006). Community genomics among stratified microbial assemblages in the ocean's interior. Science 311, 496-503. doi: 10.1126/science.1120250
    • (2006) Science , vol.311 , pp. 496-503
    • Delong, E.F.1    Preston, C.M.2    Mincer, T.3    Rich, V.4    Hallam, S.J.5    Frigaard, N.U.6
  • 11
    • 77953555505 scopus 로고    scopus 로고
    • Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume
    • Dick, G. J., and Tebo, B. M. (2010). Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume. Environ. Microbiol. 12, 1334-1347.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1334-1347
    • Dick, G.J.1    Tebo, B.M.2
  • 12
    • 0024022987 scopus 로고
    • Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences
    • Distel, D. L., Lane, D. J., Olsen, G. J., Giovannoni, S. J., Pace, B., Pace, N. R., et al. (1988). Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences. J. Bacteriol. 170, 2506-2510.
    • (1988) J. Bacteriol. , vol.170 , pp. 2506-2510
    • Distel, D.L.1    Lane, D.J.2    Olsen, G.J.3    Giovannoni, S.J.4    Pace, B.5    Pace, N.R.6
  • 13
    • 0028594650 scopus 로고
    • Microbial sulfate reduction in deep-sea sediments at the Guaymas Basin hydrothermal vent area: influence of temperature and substrates
    • doi: 10.1016/0016-7037(94)90089-2
    • Elsgaard, L., Isaksen, M. F., Jørgensen, B. B., Alayse, A. M., and Jannasch, H. W. (1994). Microbial sulfate reduction in deep-sea sediments at the Guaymas Basin hydrothermal vent area: influence of temperature and substrates. Geochim. Cosmochim. Acta 58, 3335-3343. doi: 10.1016/0016-7037(94)90089-2
    • (1994) Geochim. Cosmochim. Acta , vol.58 , pp. 3335-3343
    • Elsgaard, L.1    Isaksen, M.F.2    Jørgensen, B.B.3    Alayse, A.M.4    Jannasch, H.W.5
  • 14
    • 79961169429 scopus 로고    scopus 로고
    • Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge
    • doi: 10.1111/j.1462-2920.2011.02463.x
    • Flores, G. E., Campbell, J. H., Kirshtein, J. D., Meneghin, J., Podar, M., Steinberg, J. I., et al. (2011). Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge. Environ. Microbiol. 13, 2158-2171. doi: 10.1111/j.1462-2920.2011.02463.x
    • (2011) Environ. Microbiol. , vol.13 , pp. 2158-2171
    • Flores, G.E.1    Campbell, J.H.2    Kirshtein, J.D.3    Meneghin, J.4    Podar, M.5    Steinberg, J.I.6
  • 15
    • 0033206805 scopus 로고    scopus 로고
    • Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacterium
    • doi: 10.1046/j.1462-2920.1999.00051.x
    • Galushko, A., Minz, D., Schink, B., and Widdel, F. (1999). Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacterium. Environ. Microbiol. 1, 415-420. doi: 10.1046/j.1462-2920.1999.00051.x
    • (1999) Environ. Microbiol. , vol.1 , pp. 415-420
    • Galushko, A.1    Minz, D.2    Schink, B.3    Widdel, F.4
  • 16
    • 75549089640 scopus 로고    scopus 로고
    • The University of Minnesota Biocatalysis/Biodegradation Database: improving public access
    • doi: 10.1093/nar/gkp771
    • Gao, J., Ellis, L. B., and Wackett, L. P. (2010). The University of Minnesota Biocatalysis/Biodegradation Database: improving public access. Nucleic Acids Res. 38, D488-D491. doi: 10.1093/nar/gkp771
    • (2010) Nucleic Acids Res. , vol.38
    • Gao, J.1    Ellis, L.B.2    Wackett, L.P.3
  • 17
    • 70350294348 scopus 로고    scopus 로고
    • Systematic artifacts in metagenomes from complex microbial communities
    • doi: 10.1038/ismej.2009.72
    • Gomez-Alvarez, V., Teal, T. K., and Schmidt, T. M. (2009). Systematic artifacts in metagenomes from complex microbial communities. ISME J. 3, 1314-1317. doi: 10.1038/ismej.2009.72
    • (2009) ISME J. , vol.3 , pp. 1314-1317
    • Gomez-Alvarez, V.1    Teal, T.K.2    Schmidt, T.M.3
  • 18
    • 77956094278 scopus 로고    scopus 로고
    • GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
    • doi: 10.1038/ismej.2010.46
    • He, Z., Deng, Y., Van Nostrand, J. D., Tu, Q., Xu, M., Hemme, C. L., et al. (2010). GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J. 4, 1167-1179. doi: 10.1038/ismej.2010.46
    • (2010) ISME J. , vol.4 , pp. 1167-1179
    • He, Z.1    Deng, Y.2    Van Nostrand, J.D.3    Tu, Q.4    Xu, M.5    Hemme, C.L.6
  • 19
    • 0034305148 scopus 로고    scopus 로고
    • The molecularly-uncharacterized component of nonliving organic matter in natural environments
    • doi: 10.1016/S0146-6380(00)00096-6
    • Hedges, J. I., Eglinton, G., Hatcher, P. G., Kirchman, D. L., Arnosti, C., Derenne, S., et al. (2000). The molecularly-uncharacterized component of nonliving organic matter in natural environments. Org. Geochem. 31, 945-958. doi: 10.1016/S0146-6380(00)00096-6
    • (2000) Org. Geochem. , vol.31 , pp. 945-958
    • Hedges, J.I.1    Eglinton, G.2    Hatcher, P.G.3    Kirchman, D.L.4    Arnosti, C.5    Derenne, S.6
  • 20
    • 77955237112 scopus 로고    scopus 로고
    • Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts
    • doi: 10.1111/j.1574-6941.2010.00910.x
    • Huber, J. A., Cantin, H. V., Huse, S. M., Welch, D. B., Sogin, M. L., and Butterfield, D. A. (2010). Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts. FEMS Microbiol. Ecol. 73, 538-549. doi: 10.1111/j.1574-6941.2010.00910.x
    • (2010) FEMS Microbiol. Ecol. , vol.73 , pp. 538-549
    • Huber, J.A.1    Cantin, H.V.2    Huse, S.M.3    Welch, D.B.4    Sogin, M.L.5    Butterfield, D.A.6
  • 21
    • 35148888609 scopus 로고    scopus 로고
    • Microbial population structures in the deep marine biosphere
    • doi: 10.1126/science.1146689
    • Huber, J. A., Mark Welch, D. B., Morrison, H. G., Huse, S. M., Neal, P. R., Butterfield, D. A., et al. (2007). Microbial population structures in the deep marine biosphere. Science 318, 97-100. doi: 10.1126/science.1146689
    • (2007) Science , vol.318 , pp. 97-100
    • Huber, J.A.1    Mark Welch, D.B.2    Morrison, H.G.3    Huse, S.M.4    Neal, P.R.5    Butterfield, D.A.6
  • 22
    • 33847702910 scopus 로고    scopus 로고
    • MEGAN analysis of metagenomic data
    • doi: 10.1101/gr.5969107
    • Huson, D. H., Auch, A. F., Qi, J., and Schuster, S. C. (2007). MEGAN analysis of metagenomic data. Genome Res. 17, 377-386. doi: 10.1101/gr.5969107
    • (2007) Genome Res. , vol.17 , pp. 377-386
    • Huson, D.H.1    Auch, A.F.2    Qi, J.3    Schuster, S.C.4
  • 23
    • 0022197949 scopus 로고
    • Geomicrobiology of deep-sea hydrothermal vents
    • doi: 10.1126/science.229.4715.717
    • Jannasch, H. W., and Mottl, M. J. (1985). Geomicrobiology of deep-sea hydrothermal vents. Science 229, 717-725. doi: 10.1126/science.229.4715.717
    • (1985) Science , vol.229 , pp. 717-725
    • Jannasch, H.W.1    Mottl, M.J.2
  • 24
    • 0027009779 scopus 로고
    • Bacterial sulfate reduction above 100{degrees}C in deep-sea hydrothermal vent sediments
    • doi: 10.1126/science.258.5089.1756
    • Jørgensen, B. B., Isaksen, M. F., and Jannasch, H. W. (1992). Bacterial sulfate reduction above 100{degrees}C in deep-sea hydrothermal vent sediments. Science 258, 1756-1757. doi: 10.1126/science.258.5089.1756
    • (1992) Science , vol.258 , pp. 1756-1757
    • Jørgensen, B.B.1    Isaksen, M.F.2    Jannasch, H.W.3
  • 25
    • 0025250801 scopus 로고
    • Thermophilic bacterial sulfate reduction in deep-sea sediments at the Guaymas Basin hydrothermal vents (Gulf of California)
    • doi: 10.1016/0198-0149(90)90099-H
    • Jørgensen, B. B., Zawacki, L. X., and Jannasch, H. W. (1990). Thermophilic bacterial sulfate reduction in deep-sea sediments at the Guaymas Basin hydrothermal vents (Gulf of California). Deep-Sea Res. I 37, 695-710. doi: 10.1016/0198-0149(90)90099-H
    • (1990) Deep-Sea Res. I , vol.37 , pp. 695-710
    • Jørgensen, B.B.1    Zawacki, L.X.2    Jannasch, H.W.3
  • 26
    • 2342619469 scopus 로고    scopus 로고
    • Effects of temperature and pressure on sulfate reduction and anaerobic oxidation of methane in hydrothermal sediments of Guaymas Basin
    • doi: 10.1128/AEM.70.2.1231-1233.2004
    • Kallmeyer, J., and Boetius, A. (2004). Effects of temperature and pressure on sulfate reduction and anaerobic oxidation of methane in hydrothermal sediments of Guaymas Basin. Appl. Environ. Microbiol. 70, 1231-1233. doi: 10.1128/AEM.70.2.1231-1233.2004
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1231-1233
    • Kallmeyer, J.1    Boetius, A.2
  • 28
    • 84867206624 scopus 로고    scopus 로고
    • Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments
    • doi: 10.1111/j.1462-2920.2012.02832.x
    • Kleindienst, S., Ramette, A., Amann, R., and Knittel, K. (2012). Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments. Environ. Microbiol. 14, 2689-2710. doi: 10.1111/j.1462-2920.2012.02832.x
    • (2012) Environ. Microbiol. , vol.14 , pp. 2689-2710
    • Kleindienst, S.1    Ramette, A.2    Amann, R.3    Knittel, K.4
  • 29
    • 0347033276 scopus 로고    scopus 로고
    • Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium
    • doi: 10.1128/AEM.69.2.760-768.2003
    • Kniemeyer, O., Fischer, T., Wilkes, H., Glockner, F. O., and Widdel, F. (2003). Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium. Appl. Environ. Microbiol. 69, 760-768. doi: 10.1128/AEM.69.2.760-768.2003
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 760-768
    • Kniemeyer, O.1    Fischer, T.2    Wilkes, H.3    Glockner, F.O.4    Widdel, F.5
  • 30
    • 0842303733 scopus 로고    scopus 로고
    • Autotrophic ammonia oxidation in a deep-sea hydrothermal plume
    • doi: 10.1016/S0168-6496(03)00256-3
    • Lam, P., Cowen, J. P., and Jones, R. D. (2004). Autotrophic ammonia oxidation in a deep-sea hydrothermal plume. FEMS Microbiol. Ecol. 47, 191-206. doi: 10.1016/S0168-6496(03)00256-3
    • (2004) FEMS Microbiol. Ecol. , vol.47 , pp. 191-206
    • Lam, P.1    Cowen, J.P.2    Jones, R.D.3
  • 31
    • 0025191568 scopus 로고
    • Generation of short chain organic acid anions in hydrothermally altered sediments of the Guaymas Basin, Gulf of California
    • doi: 10.1016/0883-2927(90)90037-6
    • Martens, C. S. (1990). Generation of short chain organic acid anions in hydrothermally altered sediments of the Guaymas Basin, Gulf of California. Appl. Geochem. 5, 71-76. doi: 10.1016/0883-2927(90)90037-6
    • (1990) Appl. Geochem. , vol.5 , pp. 71-76
    • Martens, C.S.1
  • 33
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • doi: 10.1186/1471-2105-9-386
    • Meyer, F., Paarmann, D., D'Souza, M., Olson, R., Glass, E. M., Kubal, M., et al. (2008). The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9:386. doi: 10.1186/1471-2105-9-386
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5    Kubal, M.6
  • 34
    • 0842323727 scopus 로고    scopus 로고
    • Thermodesulfatator indicus gen nov., sp. nov., a novel thermophilic chemolithoautotrophic sulfate-reducing bacterium isolated from the Central Indian Ridge
    • doi: 10.1099/ijs.0.02669-0
    • Moussard, H., L'Haridon, S., Tindall, B. J., Banta, A., Schumann, P., Stackebrandt, E., et al. (2004). Thermodesulfatator indicus gen. nov., sp. nov., a novel thermophilic chemolithoautotrophic sulfate-reducing bacterium isolated from the Central Indian Ridge. Int. J. Syst. Evol. Microbiol. 54, 227-233. doi: 10.1099/ijs.0.02669-0
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 227-233
    • Moussard, H.1    L'Haridon, S.2    Tindall, B.J.3    Banta, A.4    Schumann, P.5    Stackebrandt, E.6
  • 35
    • 38149026187 scopus 로고    scopus 로고
    • Anaerobic degradation of benzene by a marine sulfate-reducing enrichment culture, and cell hybridization of the dominant phylotype
    • doi: 10.1111/j.1462-2920.2007.01425.x
    • Musat, F., and Widdel, F. (2008). Anaerobic degradation of benzene by a marine sulfate-reducing enrichment culture, and cell hybridization of the dominant phylotype. Environ. Microbiol. 10, 10-19. doi: 10.1111/j.1462-2920.2007.01425.x
    • (2008) Environ. Microbiol. , vol.10 , pp. 10-19
    • Musat, F.1    Widdel, F.2
  • 36
    • 77950645212 scopus 로고    scopus 로고
    • Artificial and natural duplicates in pyrosequencing reads of metagenomic data
    • doi: 10.1186/1471-2105-11-187
    • Niu, B., Fu, L., Sun, S., and Li, W. (2010). Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics 11:187. doi: 10.1186/1471-2105-11-187
    • (2010) BMC Bioinformatics , vol.11 , pp. 187
    • Niu, B.1    Fu, L.2    Sun, S.3    Li, W.4
  • 38
    • 80051674235 scopus 로고    scopus 로고
    • Hydrogen is an energy source for hydrothermal vent symbioses
    • doi: 10.1038/nature10325
    • Petersen, J. M., Zielinski, F. U., Pape, T., Seifert, R., Moraru, C., Amann, R., et al. (2011). Hydrogen is an energy source for hydrothermal vent symbioses. Nature 476, 176-180. doi: 10.1038/nature10325
    • (2011) Nature , vol.476 , pp. 176-180
    • Petersen, J.M.1    Zielinski, F.U.2    Pape, T.3    Seifert, R.4    Moraru, C.5    Amann, R.6
  • 39
    • 84861203603 scopus 로고    scopus 로고
    • eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
    • doi: 10.1093/nar/gkr1060
    • Powell, S., Szklarczyk, D., Trachana, K., Roth, A., Kuhn, M., Muller, J., et al. (2012). eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Res. 40, D284-D289. doi: 10.1093/nar/gkr1060
    • (2012) Nucleic Acids Res. , vol.40
    • Powell, S.1    Szklarczyk, D.2    Trachana, K.3    Roth, A.4    Kuhn, M.5    Muller, J.6
  • 40
    • 0037052564 scopus 로고    scopus 로고
    • Merging genomes with geochemistry in hydrothermal ecosystems
    • doi: 10.1126/science.1072483
    • Reysenbach, A. L., and Shock, E. (2002). Merging genomes with geochemistry in hydrothermal ecosystems. Science 296, 1077-1082. doi: 10.1126/science.1072483
    • (2002) Science , vol.296 , pp. 1077-1082
    • Reysenbach, A.L.1    Shock, E.2
  • 41
    • 78651326786 scopus 로고    scopus 로고
    • FragGeneScan: predicting genes in short and error-prone reads
    • doi: 10.1093/nar/gkq747
    • Rho, M., Tang, H., and Ye, Y. (2010). FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res. 38, e191. doi: 10.1093/nar/gkq747
    • (2010) Nucleic Acids Res. , vol.38
    • Rho, M.1    Tang, H.2    Ye, Y.3
  • 42
    • 79961170774 scopus 로고    scopus 로고
    • Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems
    • doi: 10.1111/j.1574-6941.2011.01161.x
    • Roussel, E. G., Konn, C., Charlou, J. L., Donval, J. P., Fouquet, Y., Querellou, J., et al. (2011). Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems. FEMS Microbiol. Ecol. 77, 647-665. doi: 10.1111/j.1574-6941.2011.01161.x
    • (2011) FEMS Microbiol. Ecol. , vol.77 , pp. 647-665
    • Roussel, E.G.1    Konn, C.2    Charlou, J.L.3    Donval, J.P.4    Fouquet, Y.5    Querellou, J.6
  • 43
    • 0028667948 scopus 로고
    • Anaerobic oxidation of hydrocarbons in crude oil by new types of sulphate-reducing bacteria
    • doi: 10.1038/372455a0
    • Rüter, P., Rabus, R., Wilkes, H., Aeckersberg, F., Rainey, F. A., Jannasch, H. W., et al. (1994). Anaerobic oxidation of hydrocarbons in crude oil by new types of sulphate-reducing bacteria. Nature 372, 455-458. doi: 10.1038/372455a0
    • (1994) Nature , vol.372 , pp. 455-458
    • Rüter, P.1    Rabus, R.2    Wilkes, H.3    Aeckersberg, F.4    Rainey, F.A.5    Jannasch, H.W.6
  • 44
    • 64349102565 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbon analysis with the Mars organic analyzer microchip capillary electrophoresis system
    • doi: 10.1021/ac802033u
    • Stockton, A. M., Chiesl, T. N., Scherer, J. R., and Mathies, R. A. (2009). Polycyclic aromatic hydrocarbon analysis with the Mars organic analyzer microchip capillary electrophoresis system. Anal. Chem. 81, 790-796. doi: 10.1021/ac802033u
    • (2009) Anal. Chem. , vol.81 , pp. 790-796
    • Stockton, A.M.1    Chiesl, T.N.2    Scherer, J.R.3    Mathies, R.A.4
  • 46
    • 0036205605 scopus 로고    scopus 로고
    • Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities
    • Teske, A., Hinrichs, K. U., Edgcomb, V., De Vera Gomez, A., Kysela, D., Sylva, S. P., et al. (2002). Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Appl. Environ. Microbiol. 68, 1994-2007.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1994-2007
    • Teske, A.1    Hinrichs, K.U.2    Edgcomb, V.3    De Vera Gomez, A.4    Kysela, D.5    Sylva, S.P.6
  • 47
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • doi: 10.1038/nature02340
    • Tyson, G. W., Chapman, J., Hugenholtz, P., Allen, E. E., Ram, R. J., Richardson, P. M., et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428, 37-43. doi: 10.1038/nature02340
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1    Chapman, J.2    Hugenholtz, P.3    Allen, E.E.4    Ram, R.J.5    Richardson, P.M.6
  • 48
    • 20044393188 scopus 로고    scopus 로고
    • Life at depth: photobacterium profundum genome sequence and expression analysis
    • doi: 10.1126/science.1103341
    • Vezzi, A., Campanaro, S., D'Angelo, M., Simonato, F., Vitulo, N., Lauro, F. M., et al. (2005). Life at depth: photobacterium profundum genome sequence and expression analysis. Science 307, 1459-1461. doi: 10.1126/science.1103341
    • (2005) Science , vol.307 , pp. 1459-1461
    • Vezzi, A.1    Campanaro, S.2    D'Angelo, M.3    Simonato, F.4    Vitulo, N.5    Lauro, F.M.6
  • 49
    • 0025665773 scopus 로고
    • Seafloor hydrothermal activity: black smoker chemistry and chimneys
    • doi: 10.1146/annurev.ea.18.050190.001133
    • Von Damm, K. L. (1990). Seafloor hydrothermal activity: black smoker chemistry and chimneys. Annu. Rev. Earth Planet Sci. 18, 173-204. doi: 10.1146/annurev.ea.18.050190.001133
    • (1990) Annu. Rev. Earth Planet Sci. , vol.18 , pp. 173-204
    • Von Damm, K.L.1
  • 51
    • 44849097921 scopus 로고    scopus 로고
    • Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3
    • doi: 10.1371/journal.pone.0001937
    • Wang, F., Wang, J., Jian, H., Zhang, B., Li, S., Wang, F., et al. (2008). Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. PLoS ONE 3, e1937. doi: 10.1371/journal.pone.0001937
    • (2008) PLoS ONE , vol.3
    • Wang, F.1    Wang, J.2    Jian, H.3    Zhang, B.4    Li, S.5    Wang, F.6
  • 52
    • 63849227208 scopus 로고    scopus 로고
    • GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent
    • doi: 10.1073/pnas.0810418106
    • Wang, F., Zhou, H., Meng, J., Peng, X., Jiang, L., Sun, P., et al. (2009). GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent. Proc. Natl. Acad. Sci. U.S.A. 106, 4840-4845. doi: 10.1073/pnas.0810418106
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 4840-4845
    • Wang, F.1    Zhou, H.2    Meng, J.3    Peng, X.4    Jiang, L.5    Sun, P.6
  • 53
    • 0036225099 scopus 로고    scopus 로고
    • Bacterial sulfate reduction in hydrothermal sediments of the Guaymas Basin, Gulf of California, Mexico
    • Weber, A., and Jørgensen, B. B. (2002). Bacterial sulfate reduction in hydrothermal sediments of the Guaymas Basin, Gulf of California, Mexico. Deep Sea Res. I 149, 827-841.
    • (2002) Deep Sea Res. I , vol.149 , pp. 827-841
    • Weber, A.1    Jørgensen, B.B.2
  • 54
    • 0024222147 scopus 로고
    • Origins of methane in hydrothermal systems
    • Welhan, J. A. (1988). Origins of methane in hydrothermal systems. Chem. Geol. 71, 183-198.
    • (1988) Chem. Geol. , vol.71 , pp. 183-198
    • Welhan, J.A.1
  • 56
    • 0035370088 scopus 로고    scopus 로고
    • Anaerobic biodegradation of saturated and aromatic hydrocarbons
    • Widdel, F., and Rabus, R. (2001). Anaerobic biodegradation of saturated and aromatic hydrocarbons. Curr. Opin. Biotechnol. 12, 259-276.
    • (2001) Curr. Opin. Biotechnol. , vol.12 , pp. 259-276
    • Widdel, F.1    Rabus, R.2
  • 57
    • 33750431080 scopus 로고    scopus 로고
    • Symbiosis insights through metagenomic analysis of a microbial consortium
    • doi: 10.1038/nature05192
    • Woyke, T., Teeling, H., Ivanova, N. N., Huntemann, M., Richter, M., Gloeckner, F. O., et al. (2006). Symbiosis insights through metagenomic analysis of a microbial consortium. Nature 443, 950-955. doi: 10.1038/nature05192
    • (2006) Nature , vol.443 , pp. 950-955
    • Woyke, T.1    Teeling, H.2    Ivanova, N.N.3    Huntemann, M.4    Richter, M.5    Gloeckner, F.O.6
  • 58
    • 80052606131 scopus 로고    scopus 로고
    • WebMGA: a customizable web server for fast metagenomic sequence analysis
    • doi: 10.1186/1471-2164-12-444
    • Wu, S., Zhu, Z., Fu, L., Niu, B., and Li, W. (2011). WebMGA: a customizable web server for fast metagenomic sequence analysis. BMC Genomics 12, 444. doi: 10.1186/1471-2164-12-444
    • (2011) BMC Genomics , vol.12 , pp. 444
    • Wu, S.1    Zhu, Z.2    Fu, L.3    Niu, B.4    Li, W.5
  • 59
    • 79951810387 scopus 로고    scopus 로고
    • Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries
    • doi: 10.1038/ismej.2010.144
    • Xie, W., Wang, F., Guo, L., Chen, Z., Sievert, S. M., Meng, J., et al. (2011). Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries. ISME J. 5, 414-426. doi: 10.1038/ismej.2010.144
    • (2011) ISME J. , vol.5 , pp. 414-426
    • Xie, W.1    Wang, F.2    Guo, L.3    Chen, Z.4    Sievert, S.M.5    Meng, J.6
  • 60
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • doi: 10.1101/gr.074492.107
    • Zerbino, D. R., and Birney, E. (2008). Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829. doi: 10.1101/gr.074492.107
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


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