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Volumn 4, Issue APR, 2013, Pages

Citrus tristeza virus: Evolution of complex and varied genotypic groups

Author keywords

Citrus tristeza virus; Divergence; Evolution; Genotype; Recombination; Strain

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; CITRUS TRISTEZAVIRUS; EVOLUTION; EVOLUTIONARY HOMOLOGY; GENE LOCATION; GENE MAPPING; GENETIC RECOMBINATION; GENOME ANALYSIS; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN MICROARRAY; RNA SEQUENCE; VIRUS; VIRUS CELL INTERACTION;

EID: 84884229836     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2013.00093     Document Type: Article
Times cited : (134)

References (128)
  • 1
    • 17544371797 scopus 로고    scopus 로고
    • Sequences of Citrus tristeza virus separated in time and space are essentially identical
    • Albiach-Marti, M. R., Mawassi, M., Gowda, S., Satanarayana, T., Hilf, M. E., Shanker, S., et al. (2000). Sequences of Citrus tristeza virus separated in time and space are essentially identical. J. Virol. 74, 6856-6865.
    • (2000) J. Virol. , vol.74 , pp. 6856-6865
    • Albiach-Marti, M.R.1    Mawassi, M.2    Gowda, S.3    Satanarayana, T.4    Hilf, M.E.5    Shanker, S.6
  • 2
    • 73649105508 scopus 로고    scopus 로고
    • The pathogenicity determinant of Citrus tristeza virus causing the seedling yellows symptom is located at the 3'-terminal region of the viral genome
    • Albiach-Marti, M. R., Robertson, C., Gowda, S., Tatineni, S., Belliure, B., Garnsey, S. M., et al. (2010). The pathogenicity determinant of Citrus tristeza virus causing the seedling yellows symptom is located at the 3'-terminal region of the viral genome. Mol. Plant Pathol. 11, 55-67.
    • (2010) Mol. Plant Pathol. , vol.11 , pp. 55-67
    • Albiach-Marti, M.R.1    Robertson, C.2    Gowda, S.3    Tatineni, S.4    Belliure, B.5    Garnsey, S.M.6
  • 3
    • 0344334028 scopus 로고    scopus 로고
    • New defective RNAs from Citrus tristeza virus: evidence for a replicase-driven template switching mechanism in their generation
    • Ayllon, M. A., Navas-Castillo, J., Mawassi, M., Dawson, W. O., Guerri, J., Flores, R., et al. (1999). New defective RNAs from Citrus tristeza virus: evidence for a replicase-driven template switching mechanism in their generation. J. Gen. Virol. 80, 817-821.
    • (1999) J. Gen. Virol. , vol.80 , pp. 817-821
    • Ayllon, M.A.1    Navas-Castillo, J.2    Mawassi, M.3    Dawson, W.O.4    Guerri, J.5    Flores, R.6
  • 4
    • 0024894792 scopus 로고
    • The continuing challenge of Citrus tristeza virus control
    • Bar-Joseph, M., Marcus, R., and Lee, R. F. (1989). The continuing challenge of Citrus tristeza virus control. Annu. Rev. Phytopathol. 27, 291-316.
    • (1989) Annu. Rev. Phytopathol. , vol.27 , pp. 291-316
    • Bar-Joseph, M.1    Marcus, R.2    Lee, R.F.3
  • 5
    • 0005112755 scopus 로고
    • Evaluation of the main variables that affect Citrus tristeza virus transmission by aphids
    • Bar-Joseph, M., Raccah, B., and Loebenstein, G. (1977). Evaluation of the main variables that affect Citrus tristeza virus transmission by aphids. Proc. Int. Soc. Citriculture 3, 958-961.
    • (1977) Proc. Int. Soc. Citriculture , vol.3 , pp. 958-961
    • Bar-Joseph, M.1    Raccah, B.2    Loebenstein, G.3
  • 6
    • 77955713610 scopus 로고    scopus 로고
    • Interference or insurance? More questions than answers on the roles of the multiple defective RNAs of Citrus tristeza virus
    • (St. Paul, MN: APS Press), eds A. V. Karasev, and M. E. Hilf
    • Batuman, O., Che, X., Yang, G., Mawassi, M., and Bar-Joseph, M. (2010). "Interference or insurance? More questions than answers on the roles of the multiple defective RNAs of Citrus tristeza virus," in Citrus tristeza virus Complex and tristeza Diseases, eds A. V. Karasev, and M. E. Hilf (St. Paul, MN: APS Press), 73-93.
    • (2010) Citrus tristeza virus Complex and tristeza Diseases , pp. 73-93
    • Batuman, O.1    Che, X.2    Yang, G.3    Mawassi, M.4    Bar-Joseph, M.5
  • 7
    • 33750028778 scopus 로고    scopus 로고
    • The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms
    • doi:10.1186/1471-2229-6-21
    • Bausher, M., Singh, N., Lee, S. B., Jansen, R., and Daniell, H. (2006). The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms. BMC Plant Biol. 6:21. doi:10.1186/1471-2229-6-21
    • (2006) BMC Plant Biol. , vol.6 , pp. 21
    • Bausher, M.1    Singh, N.2    Lee, S.B.3    Jansen, R.4    Daniell, H.5
  • 8
    • 84865705970 scopus 로고    scopus 로고
    • Complete nucleotide sequence of a new strain of Grapevine leafroll-associated virus 3 in South Africa
    • Bester, R., Maree, H. J., and Burger, J. T. (2012). Complete nucleotide sequence of a new strain of Grapevine leafroll-associated virus 3 in South Africa. Arch. Virol. 157, 1815-1819.
    • (2012) Arch. Virol. , vol.157 , pp. 1815-1819
    • Bester, R.1    Maree, H.J.2    Burger, J.T.3
  • 9
    • 80052153094 scopus 로고    scopus 로고
    • The genomic rate of molecular adaptation of human Influenza A virus
    • Bhatt, S., Holmes, E. C., and Pybus, O. G. (2011). The genomic rate of molecular adaptation of human Influenza A virus. Mol. Biol. Evol. 28, 2443-2451.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2443-2451
    • Bhatt, S.1    Holmes, E.C.2    Pybus, O.G.3
  • 10
    • 84857799477 scopus 로고    scopus 로고
    • Complete genome sequence of mandarin decline Citrus tristeza virus of the northeastern Himalayan hill region of India: comparative analyses determine recombinant
    • Biswas, K. K., Tarafdar, A., and Sharma, S. K. (2012). Complete genome sequence of mandarin decline Citrus tristeza virus of the northeastern Himalayan hill region of India: comparative analyses determine recombinant. Arch. Virol. 157, 579-583.
    • (2012) Arch. Virol. , vol.157 , pp. 579-583
    • Biswas, K.K.1    Tarafdar, A.2    Sharma, S.K.3
  • 11
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • Boni, M. F., Posada, D., and Feldman, M. W. (2007). An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176, 1035-1047.
    • (2007) Genetics , vol.176 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 12
    • 0033083926 scopus 로고    scopus 로고
    • Restoration of wild-type virus by double recombination of tombusvirus mutants with a host transgene
    • Borja, M., Rubio, T., Scholthof, H. B., and Jackson, A. O. (1999). Restoration of wild-type virus by double recombination of tombusvirus mutants with a host transgene. Mol. Plant Microbe Interact. 12, 153-162.
    • (1999) Mol. Plant Microbe Interact. , vol.12 , pp. 153-162
    • Borja, M.1    Rubio, T.2    Scholthof, H.B.3    Jackson, A.O.4
  • 13
    • 0030058101 scopus 로고    scopus 로고
    • Biological characterisation of Australian isolates of Citrus tristeza virus and separation of subisolates by single aphid transmissions
    • Broadbent, P., Brlansky, R. H., and Indsto, J. (1996). Biological characterisation of Australian isolates of Citrus tristeza virus and separation of subisolates by single aphid transmissions. Plant Dis. 80, 329-333.
    • (1996) Plant Dis. , vol.80 , pp. 329-333
    • Broadbent, P.1    Brlansky, R.H.2    Indsto, J.3
  • 15
    • 33845434540 scopus 로고    scopus 로고
    • Causal agent of sharka disease: historical perspective and current status of Plum pox virus strains
    • Candresse, T., and Cambra, M. (2006). Causal agent of sharka disease: historical perspective and current status of Plum pox virus strains. Bull. OEPP 36, 239-246.
    • (2006) Bull. OEPP , vol.36 , pp. 239-246
    • Candresse, T.1    Cambra, M.2
  • 16
    • 84865086489 scopus 로고    scopus 로고
    • High codon adaptation in Citrus tristeza virus to its citrus host
    • Cheng, X. F., Wu, X. Y., Wang, H. Z., Sun, Y. Q., Qian, Y. S., and Luo, L. (2012). High codon adaptation in Citrus tristeza virus to its citrus host. Virol. J. 9, 113.
    • (2012) Virol. J. , vol.9 , pp. 113
    • Cheng, X.F.1    Wu, X.Y.2    Wang, H.Z.3    Sun, Y.Q.4    Qian, Y.S.5    Luo, L.6
  • 17
    • 82355183896 scopus 로고    scopus 로고
    • Simultaneous mutations in multi-viral proteins are required for Soybean mosaic virus to gain virulence on soybean genotypes carrying different R genes
    • doi:10.1371/journal.pone.0028342
    • Chowda-Reddy, R. V., Sun, H., Hill, J. H., Poysa, V., and Wang, A. (2011). Simultaneous mutations in multi-viral proteins are required for Soybean mosaic virus to gain virulence on soybean genotypes carrying different R genes. PLoS ONE 6:e28342. doi:10.1371/journal.pone.0028342
    • (2011) PLoS ONE , vol.6
    • Chowda-Reddy, R.V.1    Sun, H.2    Hill, J.H.3    Poysa, V.4    Wang, A.5
  • 19
    • 79953310937 scopus 로고    scopus 로고
    • SHRiMP2: sensitive yet practical short read mapping
    • David, M., Dzamba, M., Lister, D., Ilie, L., and Brudno, M. (2010). SHRiMP2: sensitive yet practical short read mapping. Bioinformatics 27, 1011-1012.
    • (2010) Bioinformatics , vol.27 , pp. 1011-1012
    • David, M.1    Dzamba, M.2    Lister, D.3    Ilie, L.4    Brudno, M.5
  • 20
    • 38849144660 scopus 로고    scopus 로고
    • Creation of diversity in the animal virus world by inter-species and intra-species recombinations: lessons learned from poultry viruses
    • Davidson, I., and Silva, R. F. (2008). Creation of diversity in the animal virus world by inter-species and intra-species recombinations: lessons learned from poultry viruses. Virus Genes 36, 1-9.
    • (2008) Virus Genes , vol.36 , pp. 1-9
    • Davidson, I.1    Silva, R.F.2
  • 21
    • 33645077204 scopus 로고    scopus 로고
    • Comparative and functional genomics of closteroviruses
    • Dolja, V. V., Kreuze, J. F., and Valkonen, J. P. T. (2006). Comparative and functional genomics of closteroviruses. Virus Res. 117, 38-51.
    • (2006) Virus Res. , vol.117 , pp. 38-51
    • Dolja, V.V.1    Kreuze, J.F.2    Valkonen, J.P.T.3
  • 23
    • 20444500153 scopus 로고    scopus 로고
    • The complex interplay between plant viruses and host RNA-silencing pathways
    • Dunoyer, P., and Voinnet, O. (2005). The complex interplay between plant viruses and host RNA-silencing pathways. Curr. Opin. Plant Biol. 8, 15-23.
    • (2005) Curr. Opin. Plant Biol. , vol.8 , pp. 15-23
    • Dunoyer, P.1    Voinnet, O.2
  • 24
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. (2004a). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 25
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • doi:10.1186/1471-2105-5-113
    • Edgar, R. C. (2004b). MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. doi:10.1186/1471-2105-5-113
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 26
    • 78651331413 scopus 로고    scopus 로고
    • Characterization of a new simian immunodeficiency virus strain in a naturally infected Pan troglodytes chimpanzee with AIDS related symptoms
    • Etienne, L., Nerrienet, E., LeBreton, M., Bibila, G. T., Foupouapouognigni, Y., Rousset, D., et al. (2011). Characterization of a new simian immunodeficiency virus strain in a naturally infected Pan troglodytes chimpanzee with AIDS related symptoms. Retrovirology 8, 4.
    • (2011) Retrovirology , vol.8 , pp. 4
    • Etienne, L.1    Nerrienet, E.2    LeBreton, M.3    Bibila, G.T.4    Foupouapouognigni, Y.5    Rousset, D.6
  • 27
    • 31044432768 scopus 로고    scopus 로고
    • Posttranscriptional gene silencing of the p23 silencing suppressor of Citrus tristeza virus confers resistance to the virus in transgenic Mexican lime
    • Fagoaga, C., López, C., de Mendoza, A. H., Moreno, P., Navarro, L., Flores, R., et al. (2006). Posttranscriptional gene silencing of the p23 silencing suppressor of Citrus tristeza virus confers resistance to the virus in transgenic Mexican lime. Plant Mol. Biol. 60, 153-165.
    • (2006) Plant Mol. Biol. , vol.60 , pp. 153-165
    • Fagoaga, C.1    López, C.2    de Mendoza, A.H.3    Moreno, P.4    Navarro, L.5    Flores, R.6
  • 29
    • 84861313356 scopus 로고    scopus 로고
    • Superinfection exclusion is an active virus-controlled function that requires a specific viral protein
    • Folimonova, S. Y. (2012). Superinfection exclusion is an active virus-controlled function that requires a specific viral protein. J. Virol. 86, 5554-5561.
    • (2012) J. Virol. , vol.86 , pp. 5554-5561
    • Folimonova, S.Y.1
  • 30
    • 45749097815 scopus 로고    scopus 로고
    • Citrus tristeza virus: survival at the edge of the movement continuum
    • Folimonova, S. Y., Folomonov, A. S., Satyanarayana, T., and Dawson, T. (2008). Citrus tristeza virus: survival at the edge of the movement continuum. J. Virol. 82, 6546-6556.
    • (2008) J. Virol. , vol.82 , pp. 6546-6556
    • Folimonova, S.Y.1    Folomonov, A.S.2    Satyanarayana, T.3    Dawson, T.4
  • 31
    • 73949145225 scopus 로고    scopus 로고
    • Infection with strains of Citrus tristeza virus does not exclude superinfection by other strains of the virus
    • Folimonova, S. Y., Robertson, C. J., Shilts, T., Folimonov, A. S., Hilf, M. E., Garnsey, S. M., et al. (2010). Infection with strains of Citrus tristeza virus does not exclude superinfection by other strains of the virus. J. Virol. 84, 1314-1325.
    • (2010) J. Virol. , vol.84 , pp. 1314-1325
    • Folimonova, S.Y.1    Robertson, C.J.2    Shilts, T.3    Folimonov, A.S.4    Hilf, M.E.5    Garnsey, S.M.6
  • 32
    • 0000805519 scopus 로고
    • Identification of Citrus tristeza virus resistance in citrus relatives and its potential applications
    • Garnsey, S. M., Barrett, H. C., and Hutchison, D. J. (1987). Identification of Citrus tristeza virus resistance in citrus relatives and its potential applications. Phytophylactica 19, 187-191.
    • (1987) Phytophylactica , vol.19 , pp. 187-191
    • Garnsey, S.M.1    Barrett, H.C.2    Hutchison, D.J.3
  • 33
    • 0004659212 scopus 로고    scopus 로고
    • Differential susceptibility of pummelo and swingle citrumelo to isolates of Citrus tristeza virus,"
    • (Riverside, CA: IOCV), eds J. V. Da Graca, P. Moreno, and R. K. Yokomi
    • Garnsey, S. M., Su, H. J., and Tsai, M. C. (1996). "Differential susceptibility of pummelo and swingle citrumelo to isolates of Citrus tristeza virus," in Proceedings of the 13th Conference of the International Organization of Citrus Virologists, eds J. V. Da Graca, P. Moreno, and R. K. Yokomi (Riverside, CA: IOCV), 138-146.
    • (1996) Proceedings of the 13th Conference of the International Organization of Citrus Virologists , pp. 138-146
    • Garnsey, S.M.1    Su, H.J.2    Tsai, M.C.3
  • 34
    • 0033753825 scopus 로고    scopus 로고
    • Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs, M. J., Armstrong, J. S., and Gibbs, A. J. (2000). Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16, 573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 35
    • 0028815354 scopus 로고
    • A recombinational event in the history of luteoviruses probably induced by base-pairing between the genomes of two distinct viruses
    • Gibbs, M. J., and Cooper, J. I. (1995). A recombinational event in the history of luteoviruses probably induced by base-pairing between the genomes of two distinct viruses. Virology 206, 1129-1132.
    • (1995) Virology , vol.206 , pp. 1129-1132
    • Gibbs, M.J.1    Cooper, J.I.2
  • 36
    • 0036866366 scopus 로고    scopus 로고
    • A natural population of recombinant Plum pox virus is viable and competitive under field conditions
    • Glasa, M., Marie-Jeanne, V., Labonne, G., Subr, Z., Kudela, O., and Quiot, J. B. (2002). A natural population of recombinant Plum pox virus is viable and competitive under field conditions. Eur. J. Plant Pathol. 108, 843-853.
    • (2002) Eur. J. Plant Pathol. , vol.108 , pp. 843-853
    • Glasa, M.1    Marie-Jeanne, V.2    Labonne, G.3    Subr, Z.4    Kudela, O.5    Quiot, J.B.6
  • 37
    • 0030434548 scopus 로고    scopus 로고
    • Defective-interfering RNAs and defective viruses associated with multipartite RNA viruses of plants
    • Graves, M. V., Pogany, J., and Romero, J. (1996). Defective-interfering RNAs and defective viruses associated with multipartite RNA viruses of plants. Semin. Virol. 7, 399-408.
    • (1996) Semin. Virol. , vol.7 , pp. 399-408
    • Graves, M.V.1    Pogany, J.2    Romero, J.3
  • 38
    • 79955998952 scopus 로고    scopus 로고
    • The mode and tempo of Hepatitis C virus evolution within and among hosts
    • doi:10.1186/1471-2148-11-131
    • Gray, R. C., Parker, J., Lemey, P., Salemi, M., Katzourakis, A., and Pybus, O. G. (2011). The mode and tempo of Hepatitis C virus evolution within and among hosts. BMC Evol. Biol. 11:131. doi:10.1186/1471-2148-11-131
    • (2011) BMC Evol. Biol. , vol.11 , pp. 131
    • Gray, R.C.1    Parker, J.2    Lemey, P.3    Salemi, M.4    Katzourakis, A.5    Pybus, O.G.6
  • 39
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 40
    • 70449701622 scopus 로고    scopus 로고
    • Complete genome sequences of two distinct and diverse Citrus tristeza virus isolates from New Zealand
    • Harper, S. J., Dawson, T. E., and Pearson, M. N. (2009). Complete genome sequences of two distinct and diverse Citrus tristeza virus isolates from New Zealand. Arch. Virol. 154, 1505-1510.
    • (2009) Arch. Virol. , vol.154 , pp. 1505-1510
    • Harper, S.J.1    Dawson, T.E.2    Pearson, M.N.3
  • 41
    • 77950613089 scopus 로고    scopus 로고
    • Isolates of Citrus tristeza virus that overcome Poncirus trifoliata resistance comprise a novel strain
    • Harper, S. J., Dawson, T. E., and Pearson, M. N. (2010). Isolates of Citrus tristeza virus that overcome Poncirus trifoliata resistance comprise a novel strain. Arch. Virol. 155, 471-480.
    • (2010) Arch. Virol. , vol.155 , pp. 471-480
    • Harper, S.J.1    Dawson, T.E.2    Pearson, M.N.3
  • 42
    • 84884225652 scopus 로고    scopus 로고
    • Selective resistance to Citrus tristeza virus in red shaddock (Citrus grandis),"
    • (Riverside, CA: IOCV), eds M. E. Hilf, N. Duran-Vila, and M. A. Rocha-Pena
    • Hilf, M. E. (2005). "Selective resistance to Citrus tristeza virus in red shaddock (Citrus grandis)," in Proceedings of the 16th Conference of the International Organisation of Citrus Virologists, eds M. E. Hilf, N. Duran-Vila, and M. A. Rocha-Pena (Riverside, CA: IOCV), 44-51.
    • (2005) Proceedings of the 16th Conference of the International Organisation of Citrus Virologists , pp. 44-51
    • Hilf, M.E.1
  • 43
    • 84884262081 scopus 로고    scopus 로고
    • The tail that wags the virus: recombination defines two gene modules and provides for increased genetic diversity in a narrow-host-range plant virus,"
    • (St. Paul, MN: APS Press), eds A. V. Karasev, and M. E. Hilf
    • Hilf, M. E. (2010). "The tail that wags the virus: recombination defines two gene modules and provides for increased genetic diversity in a narrow-host-range plant virus," in Citrus tristeza virus Complex and tristeza Diseases, eds A. V. Karasev, and M. E. Hilf (St. Paul, MN: APS Press), 73-93.
    • (2010) Citrus tristeza virus Complex and tristeza Diseases , pp. 73-93
    • Hilf, M.E.1
  • 45
    • 22744455834 scopus 로고    scopus 로고
    • Genetic marker analysis of a global collection of isolates of Citrus tristeza virus: characterization and distribution of CTV genotypes and association with symptoms
    • Hilf, M. E., Mavrodieva, V., and Garnsey, S. M. (2005). Genetic marker analysis of a global collection of isolates of Citrus tristeza virus: characterization and distribution of CTV genotypes and association with symptoms. Phytopathology 95, 909-917.
    • (2005) Phytopathology , vol.95 , pp. 909-917
    • Hilf, M.E.1    Mavrodieva, V.2    Garnsey, S.M.3
  • 46
    • 0031905556 scopus 로고    scopus 로고
    • Origin and evolution of viruses
    • Holland, J., and Domingo, E. (1998). Origin and evolution of viruses. Virus Genes 16, 13-21.
    • (1998) Virus Genes , vol.16 , pp. 13-21
    • Holland, J.1    Domingo, E.2
  • 47
    • 84863709896 scopus 로고    scopus 로고
    • Hsp90 interacts specifically with viral RNA and differentially regulates replication initiation of Bamboo mosaic virus and associated satellite RNA
    • doi:10.1371/journal.ppat.1002726
    • Huang, Y. W., Hu, C. C., Liou, M. R., Chang, B. Y., Tsai, C. H., Meng, M., et al. (2012). Hsp90 interacts specifically with viral RNA and differentially regulates replication initiation of Bamboo mosaic virus and associated satellite RNA. PLoS Pathog. 8:e1002726. doi:10.1371/journal.ppat.1002726
    • (2012) PLoS Pathog. , vol.8
    • Huang, Y.W.1    Hu, C.C.2    Liou, M.R.3    Chang, B.Y.4    Tsai, C.H.5    Meng, M.6
  • 48
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson, D. H., and Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23, 254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 49
    • 77955479987 scopus 로고    scopus 로고
    • vitro assembly of plant RNA-induced silencing complexes facilitated by molecular chaperone HSP90
    • Iki, T., Yoshikawa, M., Nishikiori, M., Jaudal, M. C., Matsumoto-Yokoyama, E., Mitsuhara, I., et al. (2010). In vitro assembly of plant RNA-induced silencing complexes facilitated by molecular chaperone HSP90. Mol. Cell 39, 282-291.
    • (2010) Mol. Cell , vol.39 , pp. 282-291
    • Iki, T.1    Yoshikawa, M.2    Nishikiori, M.3    Jaudal, M.C.4    Matsumoto-Yokoyama, E.5    Mitsuhara, I.6
  • 50
    • 0033737306 scopus 로고    scopus 로고
    • Genetic diversity and evolution of Closteroviruses
    • Karasev, A. V. (2000). Genetic diversity and evolution of Closteroviruses. Annu. Rev. Phytopathol. 38, 293-324.
    • (2000) Annu. Rev. Phytopathol. , vol.38 , pp. 293-324
    • Karasev, A.V.1
  • 52
    • 0032836482 scopus 로고    scopus 로고
    • Genome evolution of Tobacco mosaic virus populations during long-term passaging in a diverse range of hosts
    • Kearney, C. M., Thomson, M. J., and Roland, K. E. (1999). Genome evolution of Tobacco mosaic virus populations during long-term passaging in a diverse range of hosts. Arch. Virol. 144, 1513-1526.
    • (1999) Arch. Virol. , vol.144 , pp. 1513-1526
    • Kearney, C.M.1    Thomson, M.J.2    Roland, K.E.3
  • 53
    • 0027198498 scopus 로고
    • Generation and selection of coronavirus defective interfering RNA with large open reading frame by RNA recombination and possible editing
    • Kim, Y. N., Lai, M. M. C., and Makino, S. (1993). Generation and selection of coronavirus defective interfering RNA with large open reading frame by RNA recombination and possible editing. Virology 194, 244-253.
    • (1993) Virology , vol.194 , pp. 244-253
    • Kim, Y.N.1    Lai, M.M.C.2    Makino, S.3
  • 54
    • 0026026113 scopus 로고
    • De novo generation of defective interfering RNAs of Tomato bushy stunt virus by high multiplicity passage
    • Knorr, D. A., Mullin, R. H., Hearne, P. Q., and Morris, A. T. (1991). De novo generation of defective interfering RNAs of Tomato bushy stunt virus by high multiplicity passage. Virology 181, 193-202.
    • (1991) Virology , vol.181 , pp. 193-202
    • Knorr, D.A.1    Mullin, R.H.2    Hearne, P.Q.3    Morris, A.T.4
  • 55
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: a comparison of methods for detecting amino acid sites under selection
    • Kosakovsky Pond, S. L., and Frost, S. D. W. (2005a). Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22, 1208-1222.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 56
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
    • Kosakovsky Pond, S. L., and Frost, S. D. W. (2005b). Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21, 2531-2533.
    • (2005) Bioinformatics , vol.21 , pp. 2531-2533
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2
  • 57
    • 80155187383 scopus 로고    scopus 로고
    • A random effects branch-site model for detecting episodic diversifying selection
    • doi:10.1371/journal.pgen.1002764
    • Kosakovsky Pond, S. L., Murrell, B., Fourment, M., Frost, S. D. W., Delport, W., and Scheffler, K. (2011). A random effects branch-site model for detecting episodic diversifying selection. Mol. Biol. Evol. 28, 3033-3043. doi:10.1371/journal.pgen.1002764
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 3033-3043
    • Kosakovsky Pond, S.L.1    Murrell, B.2    Fourment, M.3    Frost, S.D.W.4    Delport, W.5    Scheffler, K.6
  • 59
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara, A., and Griffiths-Jones, S. (2011). miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39, 152-157.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 152-157
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 60
    • 77955170783 scopus 로고    scopus 로고
    • Genome organization and sequence comparison suggest intraspecies incongruence in M RNA of Watermelon bud necrosis virus
    • Kumar, R., Mandal, B., Geetanjali, A. S., Jain, R. K., and Jaiwal, P. K. (2010). Genome organization and sequence comparison suggest intraspecies incongruence in M RNA of Watermelon bud necrosis virus. Arch. Virol. 155, 1361-1369.
    • (2010) Arch. Virol. , vol.155 , pp. 1361-1369
    • Kumar, R.1    Mandal, B.2    Geetanjali, A.S.3    Jain, R.K.4    Jaiwal, P.K.5
  • 61
    • 55249098418 scopus 로고    scopus 로고
    • HIV evades RNA interference directed at TAR by an indirect compensatory mechanism
    • Leonard, J. R., Shah, P. S., Burnett, J. C., and Schaffer, D. V. (2008). HIV evades RNA interference directed at TAR by an indirect compensatory mechanism. Cell Host Microbe 4, 484-494.
    • (2008) Cell Host Microbe , vol.4 , pp. 484-494
    • Leonard, J.R.1    Shah, P.S.2    Burnett, J.C.3    Schaffer, D.V.4
  • 63
    • 36749063510 scopus 로고    scopus 로고
    • Isolation and characterization of Israeli acute paralysis virus, a dicistrovirus affecting honeybees in Israel: evidence for diversity due to intra- and inter-species recombination
    • Maori, E., Lavi, S., Mozes-Koch, R., Gantman, Y., Peretz, Y., Edelbaum, O., et al. (2007). Isolation and characterization of Israeli acute paralysis virus, a dicistrovirus affecting honeybees in Israel: evidence for diversity due to intra- and inter-species recombination. J. Gen. Virol. 88, 3428-3438.
    • (2007) J. Gen. Virol. , vol.88 , pp. 3428-3438
    • Maori, E.1    Lavi, S.2    Mozes-Koch, R.3    Gantman, Y.4    Peretz, Y.5    Edelbaum, O.6
  • 64
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin, D., and Rybicki, E. (2000). RDP: detection of recombination amongst aligned sequences. Bioinformatics 16, 562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 65
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: a flexible and fast computer program for analyzing recombination
    • Martin, D. P., Lemey, P., Lott, M., Moulton, V., Posada, D., and Lefeuvre, P. (2010). RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26, 2462-2463.
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1    Lemey, P.2    Lott, M.3    Moulton, V.4    Posada, D.5    Lefeuvre, P.6
  • 66
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • Martin, D. P., Posada, D., Crandall, K. A., and Williamson, C. (2005). A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res. Hum. Retroviruses 21, 98-102.
    • (2005) AIDS Res. Hum. Retroviruses , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 67
    • 67649208028 scopus 로고    scopus 로고
    • Contribution of recombination and selection to molecular evolution of Citrus tristeza virus
    • Martin, S., Sambade, A., Rubio, L., Vives, M. C., and Moya, P. (2009). Contribution of recombination and selection to molecular evolution of Citrus tristeza virus. J. Gen. Virol. 90, 1527-1538.
    • (2009) J. Gen. Virol. , vol.90 , pp. 1527-1538
    • Martin, S.1    Sambade, A.2    Rubio, L.3    Vives, M.C.4    Moya, P.5
  • 69
    • 0029839351 scopus 로고    scopus 로고
    • Unusual sequence relationships between two isolates of Citrus tristeza virus
    • Mawassi, M., Mietkiewska, E., Gofman, R., Yang, G., and Bar-Joseph, M. (1996). Unusual sequence relationships between two isolates of Citrus tristeza virus. J. Gen. Virol. 77, 2359-2364.
    • (1996) J. Gen. Virol. , vol.77 , pp. 2359-2364
    • Mawassi, M.1    Mietkiewska, E.2    Gofman, R.3    Yang, G.4    Bar-Joseph, M.5
  • 70
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Maynard Smith, J. (1992). Analyzing the mosaic structure of genes. J. Mol. Evol. 34, 126-129.
    • (1992) J. Mol. Evol. , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 72
    • 77149132432 scopus 로고    scopus 로고
    • Genetic diversity and evidence for recent modular recombination in Hawaiian Citrus tristeza virus
    • Melzer, M. J., Borth, W. B., Sether, D. M., Ferreira, S., Gonsalves, D., and Hu, J. S. (2010). Genetic diversity and evidence for recent modular recombination in Hawaiian Citrus tristeza virus. Virus Genes 40, 111-118.
    • (2010) Virus Genes , vol.40 , pp. 111-118
    • Melzer, M.J.1    Borth, W.B.2    Sether, D.M.3    Ferreira, S.4    Gonsalves, D.5    Hu, J.S.6
  • 73
    • 0031442716 scopus 로고    scopus 로고
    • Efficient search for new resistant genotypes to Citrus tristeza closterovirus in the orange subfamily Aurantioideae
    • Mestre, P. F., Asins, M. J., Pina, J. A., and Navarro, L. (1997). Efficient search for new resistant genotypes to Citrus tristeza closterovirus in the orange subfamily Aurantioideae. Theor. Appl. Genet. 95, 1282-1288.
    • (1997) Theor. Appl. Genet. , vol.95 , pp. 1282-1288
    • Mestre, P.F.1    Asins, M.J.2    Pina, J.A.3    Navarro, L.4
  • 74
    • 84876450307 scopus 로고    scopus 로고
    • Composition of plant virus RNA replicase complexes
    • Mine, A., and Okuno, T. (2012). Composition of plant virus RNA replicase complexes. Curr. Opin. Virol. 2, 669-675.
    • (2012) Curr. Opin. Virol. , vol.2 , pp. 669-675
    • Mine, A.1    Okuno, T.2
  • 75
    • 39549121331 scopus 로고    scopus 로고
    • Citrus tristeza virus: a pathogen that changed the course of the citrus industry
    • Moreno, P., Ambros, S., Albiach-Marti, M. R., Guerri, J., and Pena, L. (2008). Citrus tristeza virus: a pathogen that changed the course of the citrus industry. Mol. Plant Pathol. 9, 251-268.
    • (2008) Mol. Plant Pathol. , vol.9 , pp. 251-268
    • Moreno, P.1    Ambros, S.2    Albiach-Marti, M.R.3    Guerri, J.4    Pena, L.5
  • 76
    • 3242789545 scopus 로고    scopus 로고
    • Differential selection of gene of Cucumber mosaic virus subgroups
    • Moury, B. (2004). Differential selection of gene of Cucumber mosaic virus subgroups. Mol. Biol. Evol. 21, 1602-1611.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1602-1611
    • Moury, B.1
  • 80
    • 0027482832 scopus 로고
    • Punctuated equilibrium and positive darwinian evolution in Vesicular stomatitis virus
    • Nichol, S. T., Rowe, J. E., and Fitch, W. M. (1993). Punctuated equilibrium and positive darwinian evolution in Vesicular stomatitis virus. Proc. Natl. Acad. Sci. U.S.A. 90, 10424-10428.
    • (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 10424-10428
    • Nichol, S.T.1    Rowe, J.E.2    Fitch, W.M.3
  • 81
    • 57749187632 scopus 로고    scopus 로고
    • Development of an asymmetric PCR-ELISA typing method for Citrus tristeza virus based on the coat protein gene
    • Nolasco, G., Santos, C., Silva, G., and Fonseca, F. (2009). Development of an asymmetric PCR-ELISA typing method for Citrus tristeza virus based on the coat protein gene. J. Virol. Methods 155, 97-108.
    • (2009) J. Virol. Methods , vol.155 , pp. 97-108
    • Nolasco, G.1    Santos, C.2    Silva, G.3    Fonseca, F.4
  • 83
    • 77952837458 scopus 로고    scopus 로고
    • Studying the co-evolution of protein families with the mirrortree web server
    • Ochoa, D., and Pazos, F. (2010). Studying the co-evolution of protein families with the mirrortree web server. Bioinformatics 26, 1370-1371.
    • (2010) Bioinformatics , vol.26 , pp. 1370-1371
    • Ochoa, D.1    Pazos, F.2
  • 84
    • 33846176548 scopus 로고    scopus 로고
    • Patterns of recombination in Turnip mosaic virus genomic sequences indicate hotspots of recombination
    • Ohshima, K., Tomitaka, Y., Wood, J. T., Minematsu, Y., Kajiyama, H., Tomimura, K., et al. (2007). Patterns of recombination in Turnip mosaic virus genomic sequences indicate hotspots of recombination. J. Gen. Virol. 88, 298-315.
    • (2007) J. Gen. Virol. , vol.88 , pp. 298-315
    • Ohshima, K.1    Tomitaka, Y.2    Wood, J.T.3    Minematsu, Y.4    Kajiyama, H.5    Tomimura, K.6
  • 85
    • 0036893345 scopus 로고    scopus 로고
    • RNA recombination in Brome mosaic virus: effects of strand-specific stem-loop inserts
    • Olsthoorn, R. C. L., Bruyere, A., Dzianott, A., and Bujarski, J. J. (2002). RNA recombination in Brome mosaic virus: effects of strand-specific stem-loop inserts. J. Virol. 76, 12654-12662.
    • (2002) J. Virol. , vol.76 , pp. 12654-12662
    • Olsthoorn, R.C.L.1    Bruyere, A.2    Dzianott, A.3    Bujarski, J.J.4
  • 86
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam, M., Sawyer, S., and Fauquet, C. M. (1999). Possible emergence of new geminiviruses by frequent recombination. Virology 265, 218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 87
    • 59849117106 scopus 로고    scopus 로고
    • Sewall Wright's adaptive landscapes: 1932 vs
    • Pigliucci, M. (2008). Sewall Wright's adaptive landscapes: 1932 vs. 1988. Biol. Philos. 23, 591-603.
    • (2008) 1988. Biol. Philos. , vol.23 , pp. 591-603
    • Pigliucci, M.1
  • 88
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: computer simulations
    • Posada, D., and Crandall, K. A. (2001). Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. U.S.A. 98, 13757-13762.
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 89
    • 67651100815 scopus 로고    scopus 로고
    • Evolutionary analysis of the dynamics of viral infectious disease
    • Pybus, O. G., and Rambaut, A. (2009). Evolutionary analysis of the dynamics of viral infectious disease. Nat. Genet. 10, 540-550.
    • (2009) Nat. Genet. , vol.10 , pp. 540-550
    • Pybus, O.G.1    Rambaut, A.2
  • 90
    • 0347642850 scopus 로고
    • Transmission of Citrus tristeza virus by the melon aphid
    • Raccah, B., Loebenstein, G., and Bar-Joseph, M. (1976). Transmission of Citrus tristeza virus by the melon aphid. Phytopathology 66, 1102-1104.
    • (1976) Phytopathology , vol.66 , pp. 1102-1104
    • Raccah, B.1    Loebenstein, G.2    Bar-Joseph, M.3
  • 91
    • 0002146276 scopus 로고
    • Aphid-transmissibility variants of Citrus tristeza virus in infected citrus trees
    • Raccah, B., Loebenstein, G., and Singer, S. (1980). Aphid-transmissibility variants of Citrus tristeza virus in infected citrus trees. Phytopathology 70, 89-93.
    • (1980) Phytopathology , vol.70 , pp. 89-93
    • Raccah, B.1    Loebenstein, G.2    Singer, S.3
  • 92
    • 0027472267 scopus 로고
    • Recombination and polymerase error facilitate restoration of infectivity in Brome mosaic virus
    • Rao, A. L. N., and Hall, T. C. (1993). Recombination and polymerase error facilitate restoration of infectivity in Brome mosaic virus. J. Virol. 67, 969-979.
    • (1993) J. Virol. , vol.67 , pp. 969-979
    • Rao, A.L.N.1    Hall, T.C.2
  • 93
    • 79958266884 scopus 로고    scopus 로고
    • A new, fast algorithm for detecting protein coevolution using maximum compatible cliques
    • Rodinov, A., Begzinov, A., Rose, J., and Tiller, E. R. M. (2011). A new, fast algorithm for detecting protein coevolution using maximum compatible cliques. Algorithms Mol. Biol. 6, 17.
    • (2011) Algorithms Mol. Biol. , vol.6 , pp. 17
    • Rodinov, A.1    Begzinov, A.2    Rose, J.3    Tiller, E.R.M.4
  • 95
    • 0034976641 scopus 로고    scopus 로고
    • Cucumber mosaic virus, a model for RNA virus evolution
    • Roossinck, M. (2001). Cucumber mosaic virus, a model for RNA virus evolution. Mol. Plant Pathol. 2, 59-63.
    • (2001) Mol. Plant Pathol. , vol.2 , pp. 59-63
    • Roossinck, M.1
  • 96
    • 30644459000 scopus 로고    scopus 로고
    • Mutant clouds and occupation of sequence space in plant RNA viruses
    • Roossinck, M. J., and Schneider, W. L. (2006). Mutant clouds and occupation of sequence space in plant RNA viruses. Curr. Top. Microbiol. Immunol. 299, 337-348.
    • (2006) Curr. Top. Microbiol. Immunol. , vol.299 , pp. 337-348
    • Roossinck, M.J.1    Schneider, W.L.2
  • 97
    • 77958050226 scopus 로고    scopus 로고
    • Development and application of a multiplex reverse transcription polymerase chain reaction assay for screening a global collection of Citrus tristeza virus isolates
    • Roy, A., Ananthakrishnan, G., Hartung, J. S., and Brlansky, R. H. (2010). Development and application of a multiplex reverse transcription polymerase chain reaction assay for screening a global collection of Citrus tristeza virus isolates. Phytopathology 100, 1077-1088.
    • (2010) Phytopathology , vol.100 , pp. 1077-1088
    • Roy, A.1    Ananthakrishnan, G.2    Hartung, J.S.3    Brlansky, R.H.4
  • 98
    • 77954244609 scopus 로고    scopus 로고
    • Genome analysis of an orange stem pitting Citrus tristeza virus isolate reveals a novel recombinant genotype
    • Roy, A., and Brlansky, R. H. (2010). Genome analysis of an orange stem pitting Citrus tristeza virus isolate reveals a novel recombinant genotype. Virus Res. 151, 118-130.
    • (2010) Virus Res. , vol.151 , pp. 118-130
    • Roy, A.1    Brlansky, R.H.2
  • 99
    • 0034864956 scopus 로고    scopus 로고
    • Genetic variation of Citrus tristeza virus isolates from California and Spain: evidence for mixed infections and recombination
    • Rubio, L., Ayllon, M. A., Kong, P., Fernandez, A., Polek, M., Guerri, J., et al. (2001). Genetic variation of Citrus tristeza virus isolates from California and Spain: evidence for mixed infections and recombination. J. Virol. 75, 8054-8062.
    • (2001) J. Virol. , vol.75 , pp. 8054-8062
    • Rubio, L.1    Ayllon, M.A.2    Kong, P.3    Fernandez, A.4    Polek, M.5    Guerri, J.6
  • 100
    • 31144456370 scopus 로고    scopus 로고
    • The complete nucleotide sequence of a severe stem pitting isolate of Citrus tristeza virus from Spain: comparison with isolates from different origins
    • Ruiz-Ruiz, S., Moreno, P., Guerri, J., and Ambros, S. (2006). The complete nucleotide sequence of a severe stem pitting isolate of Citrus tristeza virus from Spain: comparison with isolates from different origins. Arch. Virol. 151, 387-398.
    • (2006) Arch. Virol. , vol.151 , pp. 387-398
    • Ruiz-Ruiz, S.1    Moreno, P.2    Guerri, J.3    Ambros, S.4
  • 101
    • 84863713754 scopus 로고    scopus 로고
    • From molecular genetics to phylodynamics: evolutionary relevance of mutation rates across viruses
    • doi:10.1371/journal.ppat.1002685
    • Sanjuan, R. (2012). From molecular genetics to phylodynamics: evolutionary relevance of mutation rates across viruses. PLoS Pathog. 8:e1002685. doi:10.1371/journal.ppat.1002685
    • (2012) PLoS Pathog. , vol.8
    • Sanjuan, R.1
  • 105
    • 0034610235 scopus 로고    scopus 로고
    • Closterovirus encoded HSP70 homolog and p61 in addition to both coat proteins function in efficient virion assembly
    • Satyanarayana, T., Gowda, S., Mawassi, M., Albiach-Marti, M. R., Ayllon, M. A., Robertson, C., et al. (2000). Closterovirus encoded HSP70 homolog and p61 in addition to both coat proteins function in efficient virion assembly. Virology 278, 253-265.
    • (2000) Virology , vol.278 , pp. 253-265
    • Satyanarayana, T.1    Gowda, S.2    Mawassi, M.3    Albiach-Marti, M.R.4    Ayllon, M.A.5    Robertson, C.6
  • 106
    • 84872268756 scopus 로고    scopus 로고
    • Genotype composition of populations of grapefruit-cross-protecting citrus tristeza virus strain GFMS12 in different host plants and aphid-transmitted sub-isolates
    • Scott, K. A., Hlela, Q., Zablocki, O., Read, D., van Vuuren, S., and Pietersen, G. (2013). Genotype composition of populations of grapefruit-cross-protecting citrus tristeza virus strain GFMS12 in different host plants and aphid-transmitted sub-isolates. Arch. Virol. 158, 27-37.
    • (2013) Arch. Virol. , vol.158 , pp. 27-37
    • Scott, K.A.1    Hlela, Q.2    Zablocki, O.3    Read, D.4    van Vuuren, S.5    Pietersen, G.6
  • 107
    • 1242274560 scopus 로고    scopus 로고
    • The AU-rich RNA recombination hot spot sequence of Brome Mosaic Virus is functional in Tombus viruses: implications for the mechanism of RNA recombination
    • Shapka, N., and Nagy, P. D. (2004). The AU-rich RNA recombination hot spot sequence of Brome Mosaic Virus is functional in Tombus viruses: implications for the mechanism of RNA recombination. J. Virol. 78, 2288-2300.
    • (2004) J. Virol. , vol.78 , pp. 2288-2300
    • Shapka, N.1    Nagy, P.D.2
  • 108
    • 84855939265 scopus 로고    scopus 로고
    • The evolutionary rate of Citrus tristeza virus ranks among the rates of the slowest RNA viruses
    • Silva, G., Marques, N., and Nolasco, G. (2012). The evolutionary rate of Citrus tristeza virus ranks among the rates of the slowest RNA viruses. J. Gen. Virol. 93, 419-429.
    • (2012) J. Gen. Virol. , vol.93 , pp. 419-429
    • Silva, G.1    Marques, N.2    Nolasco, G.3
  • 109
    • 67649538978 scopus 로고    scopus 로고
    • Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic
    • Smith, G. J. D., Vijaykrishna, D., Bahl, J., Lycett, S. J., Worobey, M., Pybus, O. G., et al. (2009). Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459, 1122-1125.
    • (2009) Nature , vol.459 , pp. 1122-1125
    • Smith, G.J.D.1    Vijaykrishna, D.2    Bahl, J.3    Lycett, S.J.4    Worobey, M.5    Pybus, O.G.6
  • 110
    • 0033917047 scopus 로고    scopus 로고
    • Sugarcane yellow leaf virus: a novel member of the Luteoviridae that probably arose by inter-species recombination
    • Smith, G. R., Borg, Z., Lockhart, B. E., Braithwaite, K. S., and Gibbs, M. J. (2000). Sugarcane yellow leaf virus: a novel member of the Luteoviridae that probably arose by inter-species recombination. J. Gen. Virol. 81, 1865-1869.
    • (2000) J. Gen. Virol. , vol.81 , pp. 1865-1869
    • Smith, G.R.1    Borg, Z.2    Lockhart, B.E.3    Braithwaite, K.S.4    Gibbs, M.J.5
  • 113
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony method
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony method. Mol. Biol. Evol. 28, 2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 114
    • 4544310024 scopus 로고    scopus 로고
    • Inter and intralineage recombinants are common in natural populations of Turnip mosaic virus
    • Tan, Z., Wada, Y., Chen, J., and Ohshima, K. (2004). Inter and intralineage recombinants are common in natural populations of Turnip mosaic virus. J. Gen. Virol. 85, 2683-2696.
    • (2004) J. Gen. Virol. , vol.85 , pp. 2683-2696
    • Tan, Z.1    Wada, Y.2    Chen, J.3    Ohshima, K.4
  • 115
    • 84864381322 scopus 로고    scopus 로고
    • Enhancement or attenuation of disease by deletion of genes from Citrus tristeza virus
    • Tatineni, S., and Dawson, W. O. (2012). Enhancement or attenuation of disease by deletion of genes from Citrus tristeza virus. J. Virol. 86, 7850-7857.
    • (2012) J. Virol. , vol.86 , pp. 7850-7857
    • Tatineni, S.1    Dawson, W.O.2
  • 116
    • 80054801153 scopus 로고    scopus 로고
    • A plant virus evolved by acquiring multiple nonconserved genes to extend its host range
    • Tatineni, S., Robertson, C. J., Garnsey, S. M., and Dawson, W. O. (2011). A plant virus evolved by acquiring multiple nonconserved genes to extend its host range. Proc. Natl. Acad. Sci. U.S.A. 108, 17366-17371.
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 17366-17371
    • Tatineni, S.1    Robertson, C.J.2    Garnsey, S.M.3    Dawson, W.O.4
  • 117
    • 84859918990 scopus 로고    scopus 로고
    • Evolution of African cassava mosaic virus by recombination between bipartite and monopartite begomoviruses
    • Tiendrebeogo, F., Lefeuvre, P., Hoareau, M., Harimalala, M. A., de Bruyn, A., Villemot, J., et al. (2012). Evolution of African cassava mosaic virus by recombination between bipartite and monopartite begomoviruses. Virol. J. 9, 67.
    • (2012) Virol. J. , vol.9 , pp. 67
    • Tiendrebeogo, F.1    Lefeuvre, P.2    Hoareau, M.3    Harimalala, M.A.4    de Bruyn, A.5    Villemot, J.6
  • 118
    • 0031021278 scopus 로고    scopus 로고
    • The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
    • Unseld, M., Marienfeld, J. R., Brandt, P., and Brennicke, A. (1997). The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat. Genet. 15, 57-61.
    • (1997) Nat. Genet. , vol.15 , pp. 57-61
    • Unseld, M.1    Marienfeld, J.R.2    Brandt, P.3    Brennicke, A.4
  • 119
  • 120
    • 11344264156 scopus 로고    scopus 로고
    • Evidence of multiple recombination events between two RNA sequence variants within a Citrus tristeza virus isolate
    • Vives, M. C., Rubio, L., Sambade, A., Mirkov, T. E., Moreno, P., and Guerri, J. (2005). Evidence of multiple recombination events between two RNA sequence variants within a Citrus tristeza virus isolate. Virology 331, 232-237.
    • (2005) Virology , vol.331 , pp. 232-237
    • Vives, M.C.1    Rubio, L.2    Sambade, A.3    Mirkov, T.E.4    Moreno, P.5    Guerri, J.6
  • 121
    • 70349283043 scopus 로고    scopus 로고
    • Interaction of the Tobacco mosaic virus replicase protein with a NAC domain transcription factor is associated with the suppression of systemic host defenses
    • Wang, X., Goregaoker, S. P., and Culver, J. N. (2009). Interaction of the Tobacco mosaic virus replicase protein with a NAC domain transcription factor is associated with the suppression of systemic host defenses. J. Virol. 83, 9720-9730.
    • (2009) J. Virol. , vol.83 , pp. 9720-9730
    • Wang, X.1    Goregaoker, S.P.2    Culver, J.N.3
  • 123
    • 39149122315 scopus 로고    scopus 로고
    • Persistent infection and promiscuous recombination of multiple genotypes of an RNA virus within a single host generate extensive diversity
    • doi:10.1371/journal.pone.0000917
    • Weng, Z., Barthelson, R., Gowda, S., Hilf, M. E., Dawson, W. O., Galbraith, D. W., et al. (2007). Persistent infection and promiscuous recombination of multiple genotypes of an RNA virus within a single host generate extensive diversity. PLoS ONE 2:e917. doi:10.1371/journal.pone.0000917
    • (2007) PLoS ONE , vol.2
    • Weng, Z.1    Barthelson, R.2    Gowda, S.3    Hilf, M.E.4    Dawson, W.O.5    Galbraith, D.W.6
  • 124
    • 44849122679 scopus 로고    scopus 로고
    • A comparison of phylogenetic network methods using computer simulation
    • doi:10.1371/journal.pone.0001913
    • Woolley, S. M., Posada, D., and Crandall, K. A. (2008). A comparison of phylogenetic network methods using computer simulation. PLoS ONE 3:e1913. doi:10.1371/journal.pone.0001913
    • (2008) PLoS ONE , vol.3
    • Woolley, S.M.1    Posada, D.2    Crandall, K.A.3
  • 125
    • 0000907353 scopus 로고
    • The roles of mutation, inbreeding, crossbreeding and selection in evolution,"
    • ed. D. F. Jones (Brooklyn, NY: Brooklyn Botanic Garden)
    • Wright, S. (1932). "The roles of mutation, inbreeding, crossbreeding and selection in evolution," in Proceedings of the Sixth International Congress of Genetics, Vol. 1, ed. D. F. Jones (Brooklyn, NY: Brooklyn Botanic Garden), 356-366.
    • (1932) Proceedings of the Sixth International Congress of Genetics , vol.1 , pp. 356-366
    • Wright, S.1
  • 126
    • 0001416961 scopus 로고
    • Surfaces of selective value revisited
    • Wright, S. (1988). Surfaces of selective value revisited. Am. Nat. 131, 115-123.
    • (1988) Am. Nat. , vol.131 , pp. 115-123
    • Wright, S.1
  • 127
    • 0032882070 scopus 로고    scopus 로고
    • Molecular characterization of an isolate of Citrus tristeza virus that causes severe symptoms in sweet orange
    • Yang, Z. N., Matthews, D. M., Dodds, J. A., and Mirkov, T. E. (1999). Molecular characterization of an isolate of Citrus tristeza virus that causes severe symptoms in sweet orange. Virus Genes 19, 131-142.
    • (1999) Virus Genes , vol.19 , pp. 131-142
    • Yang, Z.N.1    Matthews, D.M.2    Dodds, J.A.3    Mirkov, T.E.4
  • 128
    • 0000441502 scopus 로고    scopus 로고
    • Graft compatibility of Citrus with plants in the Aurantioideae and their susceptibility to Citrus tristeza virus
    • Yoshida, T. (1996). Graft compatibility of Citrus with plants in the Aurantioideae and their susceptibility to Citrus tristeza virus. Plant Dis. 80, 414-417.
    • (1996) Plant Dis. , vol.80 , pp. 414-417
    • Yoshida, T.1


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