-
1
-
-
0026602984
-
RNA recombination in animal and plant viruses
-
Lai MMC (1992) RNA recombination in animal and plant viruses. Microbiological Reviews 56: 61-79.
-
(1992)
Microbiological Reviews
, vol.56
, pp. 61-79
-
-
Lai, M.M.C.1
-
3
-
-
24944468625
-
Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses
-
Holmes EC, Ghedin E, Miller N, Taylor J, Bao YM, et al. (2005) Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses. Plos Biology 3: 1579-1589.
-
(2005)
Plos Biology
, vol.3
, pp. 1579-1589
-
-
Holmes, E.C.1
Ghedin, E.2
Miller, N.3
Taylor, J.4
Bao, Y.M.5
-
4
-
-
33645972304
-
A phylogenetic survey of recombination frequency in plant RNA viruses
-
Chare ER, Holmes EC (2006) A phylogenetic survey of recombination frequency in plant RNA viruses. Archives of Virology 151: 933-946.
-
(2006)
Archives of Virology
, vol.151
, pp. 933-946
-
-
Chare, E.R.1
Holmes, E.C.2
-
5
-
-
0035822899
-
Recombination in the hemagglutinin gene of the 1918 "Spanish flu
-
Gibbs MJ, Armstrong JS, Gibbs AJ (2001) Recombination in the hemagglutinin gene of the 1918 "Spanish flu". Science 293: 1842-1245.
-
(2001)
Science
, vol.293
, pp. 1842-1245
-
-
Gibbs, M.J.1
Armstrong, J.S.2
Gibbs, A.J.3
-
7
-
-
33745436262
-
A dual superinfection and recombination within HIV-1 subtype B 12 years after primoinfection
-
Pernas M, Casado C, Fuentes R, Perez-Elias MJ, Lopez-Galindez C (2006) A dual superinfection and recombination within HIV-1 subtype B 12 years after primoinfection. Jaids-Journal of Acquired Immune Deficiency Syndromes 42: 12-18.
-
(2006)
Jaids-Journal of Acquired Immune Deficiency Syndromes
, vol.42
, pp. 12-18
-
-
Pernas, M.1
Casado, C.2
Fuentes, R.3
Perez-Elias, M.J.4
Lopez-Galindez, C.5
-
8
-
-
11344264156
-
Evidence of multiple recombination events between two RNA sequence variants within a Citrus tristeza virus isolate
-
Vives MC, Rubio L, Sambade A, Mirkov TE, Moreno P, et al. (2005) Evidence of multiple recombination events between two RNA sequence variants within a Citrus tristeza virus isolate. Virology 331: 232-237.
-
(2005)
Virology
, vol.331
, pp. 232-237
-
-
Vives, M.C.1
Rubio, L.2
Sambade, A.3
Mirkov, T.E.4
Moreno, P.5
-
9
-
-
17544371797
-
Sequences of Citrus tristeza virus separated in time and space are essentially identical
-
Albiach-Marti MR, Mawassi M, Gowda S, Satyanarayana T, Hilf ME, et al. (2000) Sequences of Citrus tristeza virus separated in time and space are essentially identical. Journal of Virology 74: 6856-6865.
-
(2000)
Journal of Virology
, vol.74
, pp. 6856-6865
-
-
Albiach-Marti, M.R.1
Mawassi, M.2
Gowda, S.3
Satyanarayana, T.4
Hilf, M.E.5
-
10
-
-
0029072363
-
Complete sequence of the Citrus tristeza virus RNA genome
-
Karasev AV, Boyko VP, Cowda S, Nikolaeva OV, Hilf ME, et al. (1995) Complete sequence of the Citrus tristeza virus RNA genome. Virology 208: 511-520.
-
(1995)
Virology
, vol.208
, pp. 511-520
-
-
Karasev, A.V.1
Boyko, V.P.2
Cowda, S.3
Nikolaeva, O.V.4
Hilf, M.E.5
-
11
-
-
0029839351
-
Unusual sequence relationships between two isolates of citrus tristeza virus
-
Mawassi M, Mietkiewska E, Gofman R, Yang G, BarJoseph M (1996) Unusual sequence relationships between two isolates of citrus tristeza virus. Journal of General Virology 77: 2359-2364.
-
(1996)
Journal of General Virology
, vol.77
, pp. 2359-2364
-
-
Mawassi, M.1
Mietkiewska, E.2
Gofman, R.3
Yang, G.4
BarJoseph, M.5
-
12
-
-
0032882070
-
Molecular characterization of an isolate of citrus tristeza virus that causes severe symptoms in sweet orange
-
Yang ZN, Mathews DM, Dodds JA, Mirkov TE (1999) Molecular characterization of an isolate of citrus tristeza virus that causes severe symptoms in sweet orange. Virus Genes 19: 131-142.
-
(1999)
Virus Genes
, vol.19
, pp. 131-142
-
-
Yang, Z.N.1
Mathews, D.M.2
Dodds, J.A.3
Mirkov, T.E.4
-
14
-
-
0028888302
-
Citrus tristeza virus and its aphid vector Toxoptera citricida - threats to citrus production in the Caribbean and Central and North America
-
Rocha-Pena MA, Lee RF, Lastra R, Niblett CL, Ochoacorona FM, et al. (1995) Citrus tristeza virus and its aphid vector Toxoptera citricida - threats to citrus production in the Caribbean and Central and North America. Plant Disease 79: 437-445.
-
(1995)
Plant Disease
, vol.79
, pp. 437-445
-
-
Rocha-Pena, M.A.1
Lee, R.F.2
Lastra, R.3
Niblett, C.L.4
Ochoacorona, F.M.5
-
16
-
-
0032991969
-
The complete genome sequence of the major component of a mild citrus tristeza virus isolate
-
Vives MC, Rubio L, Lopez C, Navas-Castille, J, Albiach-Mard MR, et al. (1999) The complete genome sequence of the major component of a mild citrus tristeza virus isolate. Journal of General Virology 80: 811-816.
-
(1999)
Journal of General Virology
, vol.80
, pp. 811-816
-
-
Vives, M.C.1
Rubio, L.2
Lopez, C.3
Navas-Castille, J.4
Albiach-Mard, M.R.5
-
17
-
-
31144456370
-
The complete nucleotide sequence of a severe stem pitting isolate of Citrus tristeza virus from Spain: Comparison with isolates from diflerent origins
-
Ruiz-Ruiz S, Moreno P, Guerri J, Ambros S (2006) The complete nucleotide sequence of a severe stem pitting isolate of Citrus tristeza virus from Spain: comparison with isolates from diflerent origins. Archives of Virology 151: 387-398.
-
(2006)
Archives of Virology
, vol.151
, pp. 387-398
-
-
Ruiz-Ruiz, S.1
Moreno, P.2
Guerri, J.3
Ambros, S.4
-
18
-
-
0032831207
-
D-RNA molecules associated with subisolates of the VT strain of citrus tristeza virus which induce different seedling-yellows reactions
-
Yang GA, Che YB, Gofman R, Ben-Shalom Y, Piestun D, et al. (1999) D-RNA molecules associated with subisolates of the VT strain of citrus tristeza virus which induce different seedling-yellows reactions. Virus Genes 19: 5-13.
-
(1999)
Virus Genes
, vol.19
, pp. 5-13
-
-
Yang, G.A.1
Che, Y.B.2
Gofman, R.3
Ben-Shalom, Y.4
Piestun, D.5
-
19
-
-
13044276228
-
An engineered closterovirus RNA replicon and analysis of heterologous terminal sequences for replication
-
Satyanarayana T, Gowda S, Boyko VP, Albiach-Marti MR, Mawassi M, et al. (1999) An engineered closterovirus RNA replicon and analysis of heterologous terminal sequences for replication. Proceedings of the National Academy of Sciences of the United States of America 96: 7433-7438.
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, pp. 7433-7438
-
-
Satyanarayana, T.1
Gowda, S.2
Boyko, V.P.3
Albiach-Marti, M.R.4
Mawassi, M.5
-
20
-
-
8144226266
-
Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome
-
Lu R, Folimonov A, Shintaku M, Li WX, Falk BW, et al. (2004) Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome. Proceedings of the National Academy of Sciences of the United States of America 101: 15742-15747.
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 15742-15747
-
-
Lu, R.1
Folimonov, A.2
Shintaku, M.3
Li, W.X.4
Falk, B.W.5
-
21
-
-
0036139195
-
The p23 protein of citrus tristeza virus controls asymmetrical RNA accumulation
-
Satyanarayana T, Gowda S, Ayllon MA, Albiach-Marti MR, Rabindran S, et al. (2002) The p23 protein of citrus tristeza virus controls asymmetrical RNA accumulation. Journal of Virology 76: 473-483.
-
(2002)
Journal of Virology
, vol.76
, pp. 473-483
-
-
Satyanarayana, T.1
Gowda, S.2
Ayllon, M.A.3
Albiach-Marti, M.R.4
Rabindran, S.5
-
22
-
-
0034284792
-
The p20 gene product of Citrus tristeza virus accumulates in the amorphous inclusion bodies
-
Gowda S, Satyanarayana T, Davis CL, Navas-Castillo J, Albiach-Marti MR, et al. (2000) The p20 gene product of Citrus tristeza virus accumulates in the amorphous inclusion bodies. Virology 274: 246-254.
-
(2000)
Virology
, vol.274
, pp. 246-254
-
-
Gowda, S.1
Satyanarayana, T.2
Davis, C.L.3
Navas-Castillo, J.4
Albiach-Marti, M.R.5
-
23
-
-
0029020118
-
Characterization of Citrus tristeza virus subgenomic RNAs in infected tissue
-
Hilf ME, Karasev AV, Pappu HR, Gumpf DJ, Niblett CL, et al. (1995) Characterization of Citrus tristeza virus subgenomic RNAs in infected tissue. Virology 208: 576-582.
-
(1995)
Virology
, vol.208
, pp. 576-582
-
-
Hilf, M.E.1
Karasev, A.V.2
Pappu, H.R.3
Gumpf, D.J.4
Niblett, C.L.5
-
24
-
-
0030740649
-
Transcriptional strategy of closteroviruses: Mapping the 5′ termini of the citrus tristeza virus subgenomic RNAs
-
Karasev AV, Hilf ME, Garnsey SM, Dawson WO (1997) Transcriptional strategy of closteroviruses: Mapping the 5′ termini of the citrus tristeza virus subgenomic RNAs. Journal of Virology 71: 6233-6236.
-
(1997)
Journal of Virology
, vol.71
, pp. 6233-6236
-
-
Karasev, A.V.1
Hilf, M.E.2
Garnsey, S.M.3
Dawson, W.O.4
-
25
-
-
22744455834
-
Genetic marker analysis of a global collection of isolates of Citrus tristeza virus: Characterization and distribution of CTV genotypes and association with symptoms
-
Hilf ME, Mavrodieva VA, Camsey SM (2005) Genetic marker analysis of a global collection of isolates of Citrus tristeza virus: Characterization and distribution of CTV genotypes and association with symptoms. Phytopathology 95: 909-917.
-
(2005)
Phytopathology
, vol.95
, pp. 909-917
-
-
Hilf, M.E.1
Mavrodieva, V.A.2
Camsey, S.M.3
-
26
-
-
0033672743
-
Population structure and genetic diversity within California Citrus tristeza virus (CTV) isolates
-
Kong P, Rubio L, Polek M, Falk BW (2000) Population structure and genetic diversity within California Citrus tristeza virus (CTV) isolates. Virus Genes 21: 139-145.
-
(2000)
Virus Genes
, vol.21
, pp. 139-145
-
-
Kong, P.1
Rubio, L.2
Polek, M.3
Falk, B.W.4
-
27
-
-
7044254935
-
Genotype classification and molecular evidence for the presence of mixed infections in Indian Citrus tristeza virus isolates
-
2004
-
Roy A, Brlansky RH (2004) Genotype classification and molecular evidence for the presence of mixed infections in Indian Citrus tristeza virus isolates. Achives of Virology 149: 1911-1929.
-
(1911)
Achives of Virology
, vol.149
-
-
Roy, A.1
Brlansky, R.H.2
-
29
-
-
1542316916
-
Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays
-
Wong CW, Albert TJ, Vega VB, Norton JE, Cutler DJ, et al. (2004) Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays. Genome Research 14: 398-405.
-
(2004)
Genome Research
, vol.14
, pp. 398-405
-
-
Wong, C.W.1
Albert, T.J.2
Vega, V.B.3
Norton, J.E.4
Cutler, D.J.5
-
30
-
-
15944384859
-
Microarray-based resequencing of multiple Bacillus anthracis isolates
-
Zwick ME, McAfee F, Cutler DJ, Read TD, Ravel J, et al. (2005) Microarray-based resequencing of multiple Bacillus anthracis isolates. Genome Biology 6: R10-2005.
-
(2005)
Genome Biology
, vol.6
-
-
Zwick, M.E.1
McAfee, F.2
Cutler, D.J.3
Read, T.D.4
Ravel, J.5
-
31
-
-
0035184770
-
High-throughput variation detection and genotyping using microarrays
-
Cutler DJ, Zwick MR, Carrasquillo MM, Yohn CT, Tobin KP, et al. (2001) High-throughput variation detection and genotyping using microarrays. Genome Research 11: 1913-1925.
-
(2001)
Genome Research
, vol.11
, pp. 1913-1925
-
-
Cutler, D.J.1
Zwick, M.R.2
Carrasquillo, M.M.3
Yohn, C.T.4
Tobin, K.P.5
-
32
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Research 8: 175-185.
-
(1998)
Genome Research
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
33
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
34
-
-
0034864956
-
Genetic variation of Citrus tristeza vinis isolates from California and Spain: Evidence for mixed infections and recombination
-
Rubio L, Ayllon MA, Kong P, Fernandez A, Polck M, et al. (2001) Genetic variation of Citrus tristeza vinis isolates from California and Spain: Evidence for mixed infections and recombination. Journal of Virology 75: 8054-8062.
-
(2001)
Journal of Virology
, vol.75
, pp. 8054-8062
-
-
Rubio, L.1
Ayllon, M.A.2
Kong, P.3
Fernandez, A.4
Polck, M.5
-
35
-
-
0031715383
-
Molecular variability of the 5′- and 3′-terminal regions of citrus tristeza virus RNA
-
Lopez C, Ayllon MA, Navas-Castillo J, Guerri J, Moreno P, et al. (1998) Molecular variability of the 5′- and 3′-terminal regions of citrus tristeza virus RNA. Phytopathology 88: 685-691.
-
(1998)
Phytopathology
, vol.88
, pp. 685-691
-
-
Lopez, C.1
Ayllon, M.A.2
Navas-Castillo, J.3
Guerri, J.4
Moreno, P.5
-
36
-
-
0033737306
-
Genetic diversity and evolution of closteroviruses
-
Karasev AV (2000) Genetic diversity and evolution of closteroviruses. Annual Review of Phytopathology 38: 293-324.
-
(2000)
Annual Review of Phytopathology
, vol.38
, pp. 293-324
-
-
Karasev, A.V.1
-
37
-
-
0035840796
-
Studies on functional interaction between brome mosaic virus replicase proteins during RNA recombination, using combined mutants in vivo and in vitro
-
Dzianott A, Rauffer-Bruyere N, Bujarski JJ (2001) Studies on functional interaction between brome mosaic virus replicase proteins during RNA recombination, using combined mutants in vivo and in vitro. Virology 289: 137-149.
-
(2001)
Virology
, vol.289
, pp. 137-149
-
-
Dzianott, A.1
Rauffer-Bruyere, N.2
Bujarski, J.J.3
-
38
-
-
25144447230
-
Heterologous RNA replication enhancer stimulates in vitro RNA synthesis and template-switching by the carmovirus, but not by the tombusvirus, RNA-dependent RNA polymerase: Implication for modular evolution of RNA viruses
-
Cheng CP, Panavas T, Luo GY, Nagy PD (2005) Heterologous RNA replication enhancer stimulates in vitro RNA synthesis and template-switching by the carmovirus, but not by the tombusvirus, RNA-dependent RNA polymerase: Implication for modular evolution of RNA viruses. Virology 341: 107-121.
-
(2005)
Virology
, vol.341
, pp. 107-121
-
-
Cheng, C.P.1
Panavas, T.2
Luo, G.Y.3
Nagy, P.D.4
-
39
-
-
0242268546
-
Mechanism of RNA recombination in carmo- and tombusviruses: Evidence for template switching by the RNA-Dependent RNA polymerase in vitro
-
Cheng CP, Nagy PD (2003) Mechanism of RNA recombination in carmo- and tombusviruses: Evidence for template switching by the RNA-Dependent RNA polymerase in vitro. Journal of Virology 77: 12033-12047.
-
(2003)
Journal of Virology
, vol.77
, pp. 12033-12047
-
-
Cheng, C.P.1
Nagy, P.D.2
-
40
-
-
1242274560
-
The AU-rich RNA recombination hot spot sequence of Brome mosaic virus is functional in tombusviruses: Implications for the mechanism of RNA recombination
-
Shapka N, Nagy PD (2004) The AU-rich RNA recombination hot spot sequence of Brome mosaic virus is functional in tombusviruses: Implications for the mechanism of RNA recombination. Journal of Virology 78: 2288-2300.
-
(2004)
Journal of Virology
, vol.78
, pp. 2288-2300
-
-
Shapka, N.1
Nagy, P.D.2
-
41
-
-
0035942216
-
Factors regulating template switch in vitro by viral RNA-dependent RNA polymerases: Implications for RNA-RNA recombination
-
Kim MJ, Kao C (2001) Factors regulating template switch in vitro by viral RNA-dependent RNA polymerases: Implications for RNA-RNA recombination. Proceedings of the National Academy of Sciences of the United States of America 98: 4972-4977.
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, pp. 4972-4977
-
-
Kim, M.J.1
Kao, C.2
-
42
-
-
33646829783
-
Detection of high levels of recombination generated during PCR amplification of RNA templates
-
Yu W, Rusterholtz KJ, Krummel AT, Lehman N (2006) Detection of high levels of recombination generated during PCR amplification of RNA templates. Biotechniques 40: 499-507.
-
(2006)
Biotechniques
, vol.40
, pp. 499-507
-
-
Yu, W.1
Rusterholtz, K.J.2
Krummel, A.T.3
Lehman, N.4
-
43
-
-
33645471454
-
Identifying influenza viruses with resequencing microarrays
-
Wang Z, Daum LT, Vora GJ, Metzgar D, Walker EA, et al. (2006) Identifying influenza viruses with resequencing microarrays. Emerging Infectious, Diseases 12: 638-646.
-
(2006)
Emerging Infectious, Diseases
, vol.12
, pp. 638-646
-
-
Wang, Z.1
Daum, L.T.2
Vora, G.J.3
Metzgar, D.4
Walker, E.A.5
-
44
-
-
33645464302
-
Broadspectrum respiratory tract pathogen identification using resequencing DNA microarrays
-
Lin BC, Wang Z, Vora GJ, Thornton JA, Schnur JM, et al. (2006) Broadspectrum respiratory tract pathogen identification using resequencing DNA microarrays. Genome Research 16: 527-535.
-
(2006)
Genome Research
, vol.16
, pp. 527-535
-
-
Lin, B.C.1
Wang, Z.2
Vora, G.J.3
Thornton, J.A.4
Schnur, J.M.5
-
45
-
-
33847047774
-
Using a resequencing microarray as a multiple respiratory pathogen detection assay
-
Lin BC, Blaney KM, Malanoski AP, Ligler AG, Schnur JM, et al. (2007) Using a resequencing microarray as a multiple respiratory pathogen detection assay. Journal of Clinical Microbiology 45: 443-452.
-
(2007)
Journal of Clinical Microbiology
, vol.45
, pp. 443-452
-
-
Lin, B.C.1
Blaney, K.M.2
Malanoski, A.P.3
Ligler, A.G.4
Schnur, J.M.5
-
46
-
-
33847060393
-
GeneChip resequencing of the smallpox virus genome can identify novel strains: A biodefense application
-
Sulaiman IM, Tang K, Osborne J, Sammons S, Wohlheuter RA (2007) GeneChip resequencing of the smallpox virus genome can identify novel strains: a biodefense application. Journal of Clinical Microbiology 45: 358-363.
-
(2007)
Journal of Clinical Microbiology
, vol.45
, pp. 358-363
-
-
Sulaiman, I.M.1
Tang, K.2
Osborne, J.3
Sammons, S.4
Wohlheuter, R.A.5
-
47
-
-
0031574072
-
The CLUSTAL_X windows interface: Interface strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: interface strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
48
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page RDM (1996) TreeView: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.
-
(1996)
Computer Applications in the Biosciences
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
49
-
-
13444251528
-
RDP2: Recombination detection and analysis from sequence alignments
-
Martin DP, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
|