-
2
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson D, Foulds L. Comparison of phylogenetic trees. Mathematical Biosciences 1981, 53(1-2):131-147.
-
(1981)
Mathematical Biosciences
, vol.53
, Issue.1-2
, pp. 131-147
-
-
Robinson, D.1
Foulds, L.2
-
3
-
-
0028177080
-
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
-
Kuhner MK, Felsenstein J. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol Biol Evol 1994, 11(3):459-68.
-
(1994)
Mol Biol Evol
, vol.11
, Issue.3
, pp. 459-468
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
4
-
-
36448956752
-
The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees
-
10.1093/bioinformatics/btm466, 17890735
-
Soria-Carrasco V, Talavera G, Igea J, Castresana J. The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees. Bioinformatics 2007, 23(21):2954-6. 10.1093/bioinformatics/btm466, 17890735.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2954-2956
-
-
Soria-Carrasco, V.1
Talavera, G.2
Igea, J.3
Castresana, J.4
-
5
-
-
18944369385
-
Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
-
10.1186/1471-2148-5-27, 1087482, 15819979
-
MacLeod D, Charlebois RL, Doolittle FW, Bapteste E. Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement. BMC Evol Biol 2005, 5:27. 10.1186/1471-2148-5-27, 1087482, 15819979.
-
(2005)
BMC Evol Biol
, vol.5
, pp. 27
-
-
MacLeod, D.1
Charlebois, R.L.2
Doolittle, F.W.3
Bapteste, E.4
-
6
-
-
33645568886
-
Phylogenetic identification of lateral genetic transfer events
-
10.1186/1471-2148-6-15, 1431587, 16472400
-
Beiko RG, Hamilton N. Phylogenetic identification of lateral genetic transfer events. BMC Evol Biol 2006, 6:15. 10.1186/1471-2148-6-15, 1431587, 16472400.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 15
-
-
Beiko, R.G.1
Hamilton, N.2
-
7
-
-
0035177259
-
Similarity of phylogenetic trees as indicator of protein-protein interaction
-
10.1093/protein/14.9.609, 11707606
-
Pazos F, Valencia A. Similarity of phylogenetic trees as indicator of protein-protein interaction. Protein Eng 2001, 14(9):609-614. 10.1093/protein/14.9.609, 11707606.
-
(2001)
Protein Eng
, vol.14
, Issue.9
, pp. 609-614
-
-
Pazos, F.1
Valencia, A.2
-
8
-
-
29144461552
-
Predicting protein-protein interaction by searching evolutionary tree automorphism space
-
Jothi R, Kann MG, Przytycka TM. Predicting protein-protein interaction by searching evolutionary tree automorphism space. Bioinformatics 2005, 21:241-250.
-
(2005)
Bioinformatics
, vol.21
, pp. 241-250
-
-
Jothi, R.1
Kann, M.G.2
Przytycka, T.M.3
-
9
-
-
0037436412
-
Exploiting the Coevolution of Interacting Proteins to Discover Interaction Specificity
-
10.1016/S0022-2836(03)00114-1, 12614624
-
Ramani AK, Marcotte EM. Exploiting the Coevolution of Interacting Proteins to Discover Interaction Specificity. Journal of Molecular Biology 2003, 327:273-284. 10.1016/S0022-2836(03)00114-1, 12614624.
-
(2003)
Journal of Molecular Biology
, vol.327
, pp. 273-284
-
-
Ramani, A.K.1
Marcotte, E.M.2
-
10
-
-
33749870873
-
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions
-
10.1093/bioinformatics/btl419, 16882650
-
Sato T, Yamanishi Y, Horimoto K, Kanehisa M, Toh H. Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinformatics 2006, 22(20):2488-2492. 10.1093/bioinformatics/btl419, 16882650.
-
(2006)
Bioinformatics
, vol.22
, Issue.20
, pp. 2488-2492
-
-
Sato, T.1
Yamanishi, Y.2
Horimoto, K.3
Kanehisa, M.4
Toh, H.5
-
11
-
-
54249096791
-
Prediction of Protein Interaction Based on Similarity of Phylogenetic Trees
-
Pazos F, Juan D, Izarzugaza JM, Leon E, Valencia A. Prediction of Protein Interaction Based on Similarity of Phylogenetic Trees. Methods in Molecular Biology 2008, 484.
-
(2008)
Methods in Molecular Biology
, vol.484
-
-
Pazos, F.1
Juan, D.2
Izarzugaza, J.M.3
Leon, E.4
Valencia, A.5
-
12
-
-
0037265213
-
Prediction of protein-protein interactions from evolutionary information
-
Valencia A, Pazos F. Prediction of protein-protein interactions from evolutionary information. Methods Biochem Anal 2003, 44:411-26.
-
(2003)
Methods Biochem Anal
, vol.44
, pp. 411-426
-
-
Valencia, A.1
Pazos, F.2
-
13
-
-
33646822044
-
Codep: Maximizing co-evolutionary interdependencies to discover interacting proteins
-
Tillier ERM, Biro L, Li G, Tillo D. Codep: Maximizing co-evolutionary interdependencies to discover interacting proteins. Proteins: Structure, Function, and Bioinformatics 2006, 63(4):822-831.
-
(2006)
Proteins: Structure, Function, and Bioinformatics
, vol.63
, Issue.4
, pp. 822-831
-
-
Tillier, E.R.M.1
Biro, L.2
Li, G.3
Tillo, D.4
-
14
-
-
70349641588
-
The Human Protein Coevolution Network
-
10.1101/gr.092452.109, 2765286, 19696150
-
Tillier ERM, Charlebois RL. The Human Protein Coevolution Network. Genome Research 2009, 19(10):1861-1871. 10.1101/gr.092452.109, 2765286, 19696150.
-
(2009)
Genome Research
, vol.19
, Issue.10
, pp. 1861-1871
-
-
Tillier, E.R.M.1
Charlebois, R.L.2
-
15
-
-
80054748042
-
Using Coevolution to predict protein-protein interactions
-
New York: Humana press, Emili A, Cagney G,
-
Clark GW, Dar VN, Bezginov A, Yang JM, Charlebois RL, Tillier ER. Using Coevolution to predict protein-protein interactions. Network Biology 2011, New York: Humana press, Emili A, Cagney G, .
-
(2011)
Network Biology
-
-
Clark, G.W.1
Dar, V.N.2
Bezginov, A.3
Yang, J.M.4
Charlebois, R.L.5
Tillier, E.R.6
-
16
-
-
78651316211
-
OMA 2011: orthology inference among 1000 complete genomes
-
3013747, 21113020
-
Altenhoff AM, Schneider A, Gonnet GH, Dessimoz C. OMA 2011: orthology inference among 1000 complete genomes. Nucleic Acids Research 2011, 39(suppl 1):D289-D294. 3013747, 21113020., http://www.omabrowser.com
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.SUPPL. 1
-
-
Altenhoff, A.M.1
Schneider, A.2
Gonnet, G.H.3
Dessimoz, C.4
-
17
-
-
33745634395
-
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
-
10.1093/bioinformatics/btl158, 16731699
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22(13):1658-1659. 10.1093/bioinformatics/btl158, 16731699., http://bioinformatics.ljcrf.edu/cd-hi/
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
18
-
-
45949107473
-
Recent developments in the MAFFT multiple sequence alignment program
-
10.1093/bib/bbn013, 18372315
-
Katoh K, Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 2008, 9(4):286-98. 10.1093/bib/bbn013, 18372315., http://mafft.cbrc.jp/alignment/software/
-
(2008)
Brief Bioinform
, vol.9
, Issue.4
, pp. 286-298
-
-
Katoh, K.1
Toh, H.2
-
19
-
-
0000122573
-
Phylogeny Inference Package (Version 3.2)
-
Felsenstein J. Phylogeny Inference Package (Version 3.2). Cladistics 1989, 5:164-166., http://evolution.genetics.washington.edu/phylip/progs.data.prot.html
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
20
-
-
54949127160
-
IRefIndex: A consolidated protein interaction database with provenance
-
10.1186/1471-2105-9-405, 2573892, 18823568
-
Razick S, Magklaras G, Donaldson I. iRefIndex: A consolidated protein interaction database with provenance. BMC Bioinformatics 2008, 9:405. 10.1186/1471-2105-9-405, 2573892, 18823568., http://irefindex.uio.no
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 405
-
-
Razick, S.1
Magklaras, G.2
Donaldson, I.3
-
21
-
-
84867997005
-
A fast algorithm for the maximum clique problem
-
Östergård PRJ. A fast algorithm for the maximum clique problem. Discrete Appl Math 2002, 120(1-3):197-207.
-
(2002)
Discrete Appl Math
, vol.120
, Issue.1-3
, pp. 197-207
-
-
Östergård, P.R.J.1
-
22
-
-
79959996226
-
Acceleration of Coevolution Detection for Predicting Protein Interactions
-
University of Toronto
-
Rodionov A. Acceleration of Coevolution Detection for Predicting Protein Interactions. Master's thesis 2011, University of Toronto.
-
(2011)
Master's thesis
-
-
Rodionov, A.1
-
23
-
-
0003037529
-
Reducibility Among Combinatorial Problems
-
Plenum Press, Miller RE, Thatcher JW
-
Karp RM. Reducibility Among Combinatorial Problems. Complexity of Computer Computations 1972, 85-103. Plenum Press, Miller RE, Thatcher JW.
-
(1972)
Complexity of Computer Computations
, pp. 85-103
-
-
Karp, R.M.1
|